Wall clock time and date at job start Tue Mar 31 2020 06:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38185 * 120.84076 * 2 1 4 4 C 1.38722 * 119.29299 * 180.02562 * 3 2 1 5 5 F 1.35097 * 119.48709 * 180.02562 * 4 3 2 6 6 N 1.32187 * 121.02363 * 0.02562 * 4 3 2 7 7 C 1.31648 * 121.85305 * 359.97261 * 6 4 3 8 8 C 1.39613 * 120.58251 * 0.03005 * 7 6 4 9 9 C 1.47600 * 120.53459 * 179.70283 * 8 7 6 10 10 O 1.21479 * 120.00140 * 173.92433 * 9 8 7 11 11 O 1.34727 * 119.99629 * 353.92055 * 9 8 7 12 12 C 1.45206 * 116.99868 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47364 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47181 * 299.99861 * 13 12 11 15 15 C 1.53007 * 109.47060 * 59.99868 * 13 12 11 16 16 C 1.52998 * 109.47195 * 179.97438 * 13 12 11 17 17 C 1.50704 * 109.47124 * 179.97438 * 16 13 12 18 18 H 1.08000 * 120.00063 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00188 * 180.02562 * 17 16 13 20 20 N 1.31511 * 119.99711 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00014 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47427 * 60.00000 * 21 19 17 23 23 H 1.48498 * 109.46785 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46867 * 299.99782 * 21 19 17 25 25 H 1.08999 * 109.46757 * 263.63724 * 1 2 3 26 26 H 1.09008 * 109.46933 * 23.63409 * 1 2 3 27 27 H 1.08995 * 109.47126 * 143.63275 * 1 2 3 28 28 H 1.07995 * 120.35426 * 0.02562 * 3 2 1 29 29 H 1.07990 * 119.71093 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46492 * 300.00042 * 12 11 9 31 31 H 1.08997 * 109.47207 * 59.99239 * 12 11 9 32 32 H 1.09003 * 109.47054 * 59.99998 * 14 13 12 33 33 H 1.08996 * 109.47025 * 179.97438 * 14 13 12 34 34 H 1.08991 * 109.47188 * 299.99602 * 14 13 12 35 35 H 1.09000 * 109.47145 * 59.99523 * 15 13 12 36 36 H 1.08996 * 109.47011 * 180.02562 * 15 13 12 37 37 H 1.09004 * 109.46730 * 299.99735 * 15 13 12 38 38 H 1.08999 * 109.47574 * 300.00286 * 16 13 12 39 39 H 1.08999 * 109.46712 * 60.00801 * 16 13 12 40 40 H 0.97003 * 120.00002 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2154 1.1865 0.0000 4 6 3.6022 1.1490 -0.0005 5 9 4.2987 2.3066 0.0000 6 7 4.2526 -0.0018 -0.0016 7 6 3.6210 -1.1569 -0.0016 8 6 2.2256 -1.2034 -0.0011 9 6 1.5185 -2.4990 -0.0077 10 8 0.3093 -2.5317 0.1040 11 8 2.2143 -3.6454 -0.1378 12 6 1.4533 -4.8821 -0.1366 13 6 2.4070 -6.0680 -0.2937 14 6 3.1681 -5.9389 -1.6147 15 6 3.4017 -6.0801 0.8688 16 6 1.6052 -7.3711 -0.2918 17 6 2.5447 -8.5392 -0.4472 18 1 3.6074 -8.3692 -0.5379 19 6 2.0475 -9.8249 -0.4738 20 7 0.7535 -10.0319 -0.3639 21 14 3.2121 -11.2728 -0.6657 22 1 4.1774 -11.2847 0.4627 23 1 2.4337 -12.5374 -0.6652 24 1 3.9508 -11.1473 -1.9478 25 1 -0.3633 -0.1139 1.0213 26 1 -0.3633 0.9415 -0.4120 27 1 -0.3633 -0.8275 -0.6093 28 1 1.6951 2.1328 0.0004 29 1 4.1871 -2.0765 -0.0020 30 1 0.9108 -4.9738 0.8043 31 1 0.7450 -4.8736 -0.9650 32 1 3.7394 -5.0106 -1.6156 33 1 3.8479 -6.7835 -1.7264 34 1 2.4596 -5.9303 -2.4429 35 1 2.8595 -6.1720 1.8100 36 1 4.0815 -6.9247 0.7567 37 1 3.9730 -5.1517 0.8678 38 1 1.0633 -7.4629 0.6494 39 1 0.8965 -7.3627 -1.1199 40 1 0.4036 -10.9364 -0.3829 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870340633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:42 Heat of formation + Delta-G solvation = -125.989925 kcal Electronic energy + Delta-G solvation = -23356.681347 eV Core-core repulsion = 19664.145697 eV Total energy + Delta-G solvation = -3692.535650 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.24838 -42.05652 -40.72190 -38.72384 -36.99527 -35.09148 -34.40357 -32.57942 -29.50807 -29.09124 -27.92587 -27.88992 -25.91857 -24.92596 -23.62645 -22.28235 -19.94174 -19.37405 -18.71840 -18.34184 -18.31506 -17.63340 -17.46138 -17.19574 -16.49928 -15.82549 -15.45178 -15.32309 -15.05913 -14.72374 -14.68571 -14.42155 -14.00086 -13.92072 -13.83550 -13.75056 -13.68818 -13.31636 -12.92840 -12.75030 -12.63336 -12.28307 -12.23203 -11.98128 -11.83264 -11.53821 -11.34434 -11.04816 -10.89905 -10.88192 -10.83282 -10.50222 -10.31526 -8.14347 -6.21618 -0.81756 -0.12830 1.28895 1.43452 1.45697 1.49743 1.53750 2.29512 2.38611 2.45302 3.19627 3.20564 3.42087 3.42584 3.72470 3.94535 3.97460 4.06140 4.25522 4.34337 4.44966 4.54865 4.58218 4.63034 4.70952 4.76281 4.99852 5.04890 5.08488 5.16982 5.19113 5.30831 5.45460 5.49634 5.49955 5.54921 5.55981 5.77556 5.89492 6.29711 6.32050 6.61467 6.92317 7.46001 8.98015 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.032304 B = 0.002982 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.549024 B = 9388.586699 C =10049.613226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.051 3.949 3 C -0.192 4.192 4 C 0.331 3.669 5 F -0.107 7.107 6 N -0.547 5.547 7 C 0.207 3.793 8 C -0.203 4.203 9 C 0.512 3.488 10 O -0.520 6.520 11 O -0.340 6.340 12 C 0.092 3.908 13 C -0.055 4.055 14 C -0.121 4.121 15 C -0.121 4.121 16 C 0.041 3.959 17 C -0.515 4.515 18 H 0.071 0.929 19 C -0.002 4.002 20 N -0.937 5.937 21 Si 0.957 3.043 22 H -0.267 1.267 23 H -0.290 1.290 24 H -0.267 1.267 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.192 0.808 29 H 0.196 0.804 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.054 0.946 37 H 0.069 0.931 38 H -0.009 1.009 39 H -0.009 1.009 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.333 23.523 0.617 23.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.043 3.957 3 C -0.213 4.213 4 C 0.180 3.820 5 F -0.086 7.086 6 N -0.262 5.262 7 C 0.049 3.951 8 C -0.207 4.207 9 C 0.357 3.643 10 O -0.411 6.411 11 O -0.256 6.256 12 C 0.019 3.981 13 C -0.056 4.056 14 C -0.178 4.178 15 C -0.178 4.178 16 C 0.003 3.997 17 C -0.553 4.553 18 H 0.089 0.911 19 C -0.199 4.199 20 N -0.578 5.578 21 Si 0.782 3.218 22 H -0.192 1.192 23 H -0.216 1.216 24 H -0.192 1.192 25 H 0.110 0.890 26 H 0.121 0.879 27 H 0.100 0.900 28 H 0.209 0.791 29 H 0.213 0.787 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.009 0.991 39 H 0.009 0.991 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.785 23.428 0.649 23.741 hybrid contribution -0.707 -1.143 -0.031 1.345 sum 3.078 22.285 0.618 22.505 Atomic orbital electron populations 1.21198 0.87178 1.05113 1.04622 1.20570 0.98613 0.89829 0.86669 1.21914 0.91477 1.01253 1.06632 1.18693 0.87638 0.81605 0.94104 1.91656 1.80321 1.43988 1.92610 1.67130 1.42474 0.98299 1.18296 1.23162 0.90190 0.95186 0.86571 1.20091 0.95402 0.91113 1.14085 1.20998 0.85576 0.84894 0.72832 1.90806 1.15693 1.87971 1.46587 1.86492 1.41590 1.14796 1.82700 1.23177 0.93742 0.79629 1.01584 1.20637 0.95613 0.91714 0.97590 1.21659 0.99653 1.01528 0.94949 1.21666 0.98430 1.01654 0.96066 1.18975 0.94511 0.91389 0.94782 1.21525 0.94266 0.91167 1.48371 0.91072 1.25898 0.96439 1.02130 0.95442 1.70096 1.13728 1.21808 1.52195 0.85618 0.78823 0.78157 0.79182 1.19198 1.21595 1.19215 0.89010 0.87932 0.90022 0.79096 0.78739 0.91976 0.92000 0.91280 0.92735 0.94272 0.94237 0.92744 0.91203 0.99077 0.99100 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.85 71.24 0.63 -1.21 16 2 C 0.05 0.85 5.95 -19.41 -0.12 0.74 16 3 C -0.19 -2.58 9.75 22.37 0.22 -2.36 16 4 C 0.33 6.02 8.41 84.76 0.71 6.73 16 5 F -0.11 -1.93 17.29 44.97 0.78 -1.15 16 6 N -0.55 -11.73 10.36 -195.68 -2.03 -13.76 16 7 C 0.21 4.13 10.79 85.05 0.92 5.05 16 8 C -0.20 -4.29 5.89 -20.01 -0.12 -4.41 16 9 C 0.51 13.69 7.84 70.29 0.55 14.24 16 10 O -0.52 -15.92 13.29 19.90 0.26 -15.65 16 11 O -0.34 -9.71 8.17 -56.37 -0.46 -10.17 16 12 C 0.09 3.15 4.33 71.98 0.31 3.46 16 13 C -0.06 -2.11 0.61 -52.18 -0.03 -2.14 16 14 C -0.12 -4.22 8.08 71.98 0.58 -3.64 16 15 C -0.12 -4.21 8.08 71.98 0.58 -3.63 16 16 C 0.04 2.02 4.04 29.85 0.12 2.14 16 17 C -0.52 -27.39 7.65 25.60 0.20 -27.19 16 18 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 19 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 20 N -0.94 -56.08 13.29 21.45 0.28 -55.79 16 21 Si 0.96 43.22 29.54 68.60 2.03 45.24 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.10 0.85 8.06 -2.38 -0.02 0.83 16 27 H 0.08 1.63 5.95 -2.39 -0.01 1.62 16 28 H 0.19 1.18 8.06 -2.91 -0.02 1.15 16 29 H 0.20 3.34 7.63 -2.92 -0.02 3.32 16 30 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 32 H 0.07 2.00 7.68 -2.39 -0.02 1.98 16 33 H 0.05 2.03 6.62 -2.39 -0.02 2.01 16 34 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.05 2.02 6.62 -2.39 -0.02 2.00 16 37 H 0.07 2.00 7.68 -2.38 -0.02 1.98 16 38 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 39 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -64.34 338.24 6.93 -57.41 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: 1.05 Total: 5.75 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 5.02 Total: -11.88 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -1.74 Total: -69.55 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.20 Total: -25.82 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.78 Total: -1.15 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -64.34 6.93 -57.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870340633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.583 kcal (2) G-P(sol) polarization free energy of solvation -64.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds