Wall clock time and date at job start Tue Mar 31 2020 07:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46756 * 2 1 4 4 C 1.52999 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47425 * 54.99669 * 4 3 2 6 6 C 1.53009 * 109.46959 * 295.00271 * 4 3 2 7 7 C 1.52997 * 109.47644 * 174.99893 * 4 3 2 8 8 C 1.52999 * 109.47522 * 184.99937 * 7 4 3 9 9 N 1.46500 * 109.47216 * 180.02562 * 8 7 4 10 10 C 1.34776 * 119.99891 * 180.02562 * 9 8 7 11 11 O 1.21755 * 120.00280 * 359.97438 * 10 9 8 12 12 C 1.46239 * 119.99825 * 179.97438 * 10 9 8 13 13 S 1.75663 * 125.23100 * 0.02562 * 12 10 9 14 14 C 1.75462 * 92.09492 * 179.97438 * 13 12 10 15 15 C 1.32760 * 111.36329 * 359.97438 * 14 13 12 16 16 C 1.39549 * 125.22524 * 179.71489 * 12 10 9 17 17 C 1.40535 * 123.71796 * 0.02562 * 16 12 10 18 18 H 1.07997 * 119.99601 * 23.43680 * 17 16 12 19 19 C 1.40301 * 120.00106 * 203.43757 * 17 16 12 20 20 N 1.30643 * 120.00042 * 9.79398 * 19 17 16 21 21 Si 1.86805 * 120.00056 * 189.79151 * 19 17 16 22 22 H 1.48497 * 109.46736 * 90.00077 * 21 19 17 23 23 H 1.48497 * 109.47233 * 210.00175 * 21 19 17 24 24 H 1.48500 * 109.46979 * 329.99840 * 21 19 17 25 25 H 1.09005 * 109.46809 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47497 * 59.99884 * 1 2 3 27 27 H 1.08999 * 109.46834 * 299.99617 * 1 2 3 28 28 H 1.08993 * 109.47389 * 120.00259 * 2 1 3 29 29 H 1.08999 * 109.46834 * 240.00383 * 2 1 3 30 30 H 1.09003 * 109.47226 * 299.99734 * 3 2 1 31 31 H 1.08995 * 109.47220 * 60.00073 * 3 2 1 32 32 H 1.08997 * 109.46657 * 299.99621 * 6 4 3 33 33 H 1.08996 * 109.47033 * 59.99589 * 6 4 3 34 34 H 1.08998 * 109.47009 * 180.02562 * 6 4 3 35 35 H 1.09004 * 109.46963 * 305.00235 * 7 4 3 36 36 H 1.09003 * 109.46941 * 64.99615 * 7 4 3 37 37 H 1.09004 * 109.46768 * 299.99891 * 8 7 4 38 38 H 1.08995 * 109.46945 * 59.99846 * 8 7 4 39 39 H 0.96995 * 119.99988 * 359.97438 * 9 8 7 40 40 H 1.08001 * 124.32288 * 179.97438 * 14 13 12 41 41 H 1.08004 * 122.78890 * 180.02562 * 15 14 13 42 42 H 0.96998 * 119.99894 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 -0.0006 5 1 3.9330 0.8533 -0.8427 6 6 4.0805 0.8328 1.3065 7 6 4.0799 2.8796 -0.1264 8 6 5.6046 2.8706 -0.2524 9 7 6.0929 4.2466 -0.3722 10 6 7.4137 4.4846 -0.4960 11 8 8.2011 3.5560 -0.5079 12 6 7.9011 5.8581 -0.6162 13 16 6.8912 7.2955 -0.6146 14 6 8.2817 8.3510 -0.7912 15 6 9.4121 7.6568 -0.8450 16 6 9.2404 6.2288 -0.7435 17 6 10.3044 5.3111 -0.7731 18 1 10.1274 4.2887 -1.0725 19 6 11.5964 5.7232 -0.4135 20 7 11.7803 6.8974 0.1289 21 14 13.0538 4.5929 -0.7104 22 1 13.6151 4.8532 -2.0603 23 1 14.0955 4.8483 0.3166 24 1 12.6091 3.1787 -0.6234 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.7175 1.4221 2.1484 33 1 3.7172 -0.1910 1.3960 34 1 5.1705 0.8333 1.3062 35 1 3.6448 3.3434 -1.0118 36 1 3.7918 3.4462 0.7592 37 1 6.0396 2.4069 0.6330 38 1 5.8926 2.3041 -1.1379 39 1 5.4656 4.9864 -0.3631 40 1 8.2253 9.4280 -0.8488 41 1 10.3803 8.1232 -0.9521 42 1 12.6736 7.1824 0.3771 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881533646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:16 Heat of formation + Delta-G solvation = -56.442863 kcal Electronic energy + Delta-G solvation = -20836.507426 eV Core-core repulsion = 17713.200739 eV Total energy + Delta-G solvation = -3123.306687 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.50107 -37.42840 -35.99662 -34.24042 -33.03895 -32.38676 -29.23031 -28.36716 -26.85764 -26.03672 -23.60121 -22.02633 -21.13488 -20.23188 -19.71163 -18.73125 -17.43747 -15.83519 -15.71781 -15.47233 -15.12780 -14.82259 -14.33600 -13.94213 -13.83576 -13.62722 -13.40762 -12.85305 -12.54950 -12.44580 -12.08238 -11.92955 -11.85033 -11.78564 -11.55024 -11.47788 -11.37699 -11.11862 -11.00912 -10.78566 -10.61736 -10.49397 -10.43005 -10.35099 -10.11434 -9.61930 -9.24221 -8.40016 -8.16377 -7.46823 -7.12468 -7.02655 -4.50744 2.17917 2.97278 3.00678 3.09204 3.14558 3.65822 3.82299 3.87356 4.14099 4.48049 4.65606 4.73013 4.82168 4.99076 5.18080 5.21853 5.27913 5.40950 5.49370 5.58155 5.61810 5.71625 5.74489 5.80853 5.84791 6.01177 6.02817 6.06023 6.08999 6.18178 6.20786 6.39053 6.45604 6.72519 6.86342 7.18458 7.22241 7.38439 7.50474 7.73089 8.38593 8.49319 8.63051 8.82145 9.64061 9.88530 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.020502 B = 0.003205 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.406800 B = 8734.948992 C = 9919.543689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.088 4.088 5 H 0.072 0.928 6 C -0.152 4.152 7 C -0.126 4.126 8 C 0.128 3.872 9 N -0.752 5.752 10 C 0.599 3.401 11 O -0.565 6.565 12 C -0.430 4.430 13 S -0.052 6.052 14 C -0.206 4.206 15 C -0.099 4.099 16 C 0.140 3.860 17 C -0.378 4.378 18 H 0.112 0.888 19 C 0.067 3.933 20 N -0.779 5.779 21 Si 0.924 3.076 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.254 1.254 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.389 0.611 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.881 -6.060 0.230 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.152 4.152 4 C -0.107 4.107 5 H 0.090 0.910 6 C -0.210 4.210 7 C -0.164 4.164 8 C 0.003 3.997 9 N -0.405 5.405 10 C 0.396 3.604 11 O -0.448 6.448 12 C -0.549 4.549 13 S 0.202 5.798 14 C -0.340 4.340 15 C -0.131 4.131 16 C 0.129 3.871 17 C -0.408 4.408 18 H 0.129 0.871 19 C -0.155 4.155 20 N -0.404 5.404 21 Si 0.748 3.252 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.177 1.177 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.222 0.778 40 H 0.155 0.845 41 H 0.163 0.837 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.672 -6.330 0.443 15.073 hybrid contribution 1.785 0.011 -0.080 1.786 sum -11.887 -6.319 0.362 13.467 Atomic orbital electron populations 1.21784 0.96177 1.01350 1.01710 1.21590 0.95514 0.97216 1.02110 1.21662 0.94917 0.96596 1.02005 1.21077 0.94952 0.95930 0.98746 0.90993 1.21960 1.01683 1.00364 0.96953 1.21845 0.95358 0.96857 1.02319 1.21136 0.92500 0.84749 1.01289 1.45848 1.08023 1.07215 1.79458 1.16849 0.80466 0.87713 0.75361 1.90648 1.55019 1.45160 1.54022 1.22610 0.95626 0.92244 1.44377 1.82677 1.12769 1.00125 1.84190 1.24937 0.96207 1.01112 1.11763 1.21737 0.97962 0.94206 0.99230 1.17943 0.90844 0.91014 0.87327 1.20040 0.89994 0.99141 1.31667 0.87067 1.26383 1.01419 0.95547 0.92122 1.69674 1.25266 1.18752 1.26664 0.86012 0.78685 0.81528 0.79018 1.18922 1.19982 1.17714 0.93004 0.92856 0.92853 0.91785 0.92121 0.92035 0.92005 0.92760 0.92711 0.92053 0.91583 0.91535 0.92252 0.92648 0.77819 0.84505 0.83728 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.13 -1.02 5.69 -26.73 -0.15 -1.17 16 3 C -0.11 -1.02 4.68 -26.73 -0.13 -1.14 16 4 C -0.09 -0.91 2.39 -90.62 -0.22 -1.13 16 5 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 6 C -0.15 -1.58 8.71 37.16 0.32 -1.26 16 7 C -0.13 -1.54 4.80 -26.73 -0.13 -1.67 16 8 C 0.13 2.11 5.43 -4.04 -0.02 2.09 16 9 N -0.75 -14.98 5.55 -61.75 -0.34 -15.32 16 10 C 0.60 15.06 7.76 -13.05 -0.10 14.96 16 11 O -0.57 -15.83 14.45 5.14 0.07 -15.76 16 12 C -0.43 -11.08 6.51 -35.88 -0.23 -11.31 16 13 S -0.05 -1.14 22.25 -107.50 -2.39 -3.53 16 14 C -0.21 -4.54 11.07 28.86 0.32 -4.22 16 15 C -0.10 -2.44 9.04 -39.12 -0.35 -2.79 16 16 C 0.14 3.79 5.67 -106.21 -0.60 3.19 16 17 C -0.38 -10.32 8.52 -37.94 -0.32 -10.65 16 18 H 0.11 3.20 6.03 -52.49 -0.32 2.88 16 19 C 0.07 1.65 5.39 -17.28 -0.09 1.55 16 20 N -0.78 -19.02 10.82 55.57 0.60 -18.42 16 21 Si 0.92 18.72 29.57 -169.99 -5.03 13.69 16 22 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.25 -5.32 7.11 56.52 0.40 -4.92 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.50 6.57 -51.93 -0.34 0.16 16 34 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.03 6.56 -51.93 -0.34 0.69 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.39 7.06 7.55 -40.82 -0.31 6.75 16 40 H 0.14 2.54 8.06 -52.49 -0.42 2.12 16 41 H 0.15 3.52 6.40 -52.48 -0.34 3.19 16 42 H 0.29 6.28 8.29 -40.82 -0.34 5.94 16 LS Contribution 351.69 15.07 5.30 5.30 Total: -1.00 -29.13 351.69 -9.66 -38.79 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.53 Total: 9.53 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -1.34 Total: -14.29 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.26 Total: -33.74 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.07 Total: -15.76 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.39 Total: -3.53 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.13 -9.66 -38.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881533646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.649 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds