Wall clock time and date at job start Tue Mar 31 2020 07:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46756 * 2 1 4 4 C 1.52999 * 109.47183 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47425 * 54.99669 * 4 3 2 6 6 C 1.53009 * 109.46959 * 295.00271 * 4 3 2 7 7 C 1.52997 * 109.47644 * 174.99893 * 4 3 2 8 8 C 1.52999 * 109.47522 * 184.99937 * 7 4 3 9 9 N 1.46500 * 109.47216 * 180.02562 * 8 7 4 10 10 C 1.34776 * 119.99891 * 180.02562 * 9 8 7 11 11 O 1.21755 * 120.00280 * 359.97438 * 10 9 8 12 12 C 1.46239 * 119.99825 * 179.97438 * 10 9 8 13 13 S 1.75663 * 125.23100 * 0.02562 * 12 10 9 14 14 C 1.75462 * 92.09492 * 179.97438 * 13 12 10 15 15 C 1.32760 * 111.36329 * 359.97438 * 14 13 12 16 16 C 1.39549 * 125.22524 * 179.71489 * 12 10 9 17 17 C 1.40535 * 123.71796 * 0.02562 * 16 12 10 18 18 H 1.07997 * 119.99601 * 23.43680 * 17 16 12 19 19 C 1.40301 * 120.00106 * 203.43757 * 17 16 12 20 20 N 1.30643 * 120.00042 * 9.79398 * 19 17 16 21 21 Si 1.86805 * 120.00056 * 189.79151 * 19 17 16 22 22 H 1.48497 * 109.46736 * 90.00077 * 21 19 17 23 23 H 1.48497 * 109.47233 * 210.00175 * 21 19 17 24 24 H 1.48500 * 109.46979 * 329.99840 * 21 19 17 25 25 H 1.09005 * 109.46809 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47497 * 59.99884 * 1 2 3 27 27 H 1.08999 * 109.46834 * 299.99617 * 1 2 3 28 28 H 1.08993 * 109.47389 * 120.00259 * 2 1 3 29 29 H 1.08999 * 109.46834 * 240.00383 * 2 1 3 30 30 H 1.09003 * 109.47226 * 299.99734 * 3 2 1 31 31 H 1.08995 * 109.47220 * 60.00073 * 3 2 1 32 32 H 1.08997 * 109.46657 * 299.99621 * 6 4 3 33 33 H 1.08996 * 109.47033 * 59.99589 * 6 4 3 34 34 H 1.08998 * 109.47009 * 180.02562 * 6 4 3 35 35 H 1.09004 * 109.46963 * 305.00235 * 7 4 3 36 36 H 1.09003 * 109.46941 * 64.99615 * 7 4 3 37 37 H 1.09004 * 109.46768 * 299.99891 * 8 7 4 38 38 H 1.08995 * 109.46945 * 59.99846 * 8 7 4 39 39 H 0.96995 * 119.99988 * 359.97438 * 9 8 7 40 40 H 1.08001 * 124.32288 * 179.97438 * 14 13 12 41 41 H 1.08004 * 122.78890 * 180.02562 * 15 14 13 42 42 H 0.96998 * 119.99894 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 -0.0006 5 1 3.9330 0.8533 -0.8427 6 6 4.0805 0.8328 1.3065 7 6 4.0799 2.8796 -0.1264 8 6 5.6046 2.8706 -0.2524 9 7 6.0929 4.2466 -0.3722 10 6 7.4137 4.4846 -0.4960 11 8 8.2011 3.5560 -0.5079 12 6 7.9011 5.8581 -0.6162 13 16 6.8912 7.2955 -0.6146 14 6 8.2817 8.3510 -0.7912 15 6 9.4121 7.6568 -0.8450 16 6 9.2404 6.2288 -0.7435 17 6 10.3044 5.3111 -0.7731 18 1 10.1274 4.2887 -1.0725 19 6 11.5964 5.7232 -0.4135 20 7 11.7803 6.8974 0.1289 21 14 13.0538 4.5929 -0.7104 22 1 13.6151 4.8532 -2.0603 23 1 14.0955 4.8483 0.3166 24 1 12.6091 3.1787 -0.6234 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.7175 1.4221 2.1484 33 1 3.7172 -0.1910 1.3960 34 1 5.1705 0.8333 1.3062 35 1 3.6448 3.3434 -1.0118 36 1 3.7918 3.4462 0.7592 37 1 6.0396 2.4069 0.6330 38 1 5.8926 2.3041 -1.1379 39 1 5.4656 4.9864 -0.3631 40 1 8.2253 9.4280 -0.8488 41 1 10.3803 8.1232 -0.9521 42 1 12.6736 7.1824 0.3771 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881533646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:15 Heat of formation + Delta-G solvation = -72.319995 kcal Electronic energy + Delta-G solvation = -20837.195910 eV Core-core repulsion = 17713.200739 eV Total energy + Delta-G solvation = -3123.995171 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.23592 -38.54872 -37.78100 -35.62970 -34.91707 -33.49724 -30.97847 -29.78170 -27.83510 -27.55869 -24.88558 -23.66786 -22.05028 -21.82634 -20.85491 -20.58970 -19.22073 -17.67593 -17.26216 -16.63202 -16.49940 -16.10147 -15.94149 -15.40204 -15.18230 -14.76361 -14.45667 -14.22416 -14.12843 -13.89037 -13.66142 -13.32214 -13.17617 -12.96303 -12.84657 -12.78577 -12.65616 -12.47071 -12.23400 -12.09496 -12.03458 -11.70678 -11.46933 -11.43474 -11.29598 -11.23674 -11.06041 -10.37073 -9.92056 -9.35150 -8.94552 -8.86456 -6.46158 0.30179 1.32796 1.34145 1.36626 1.47297 1.77564 1.97216 2.17162 2.54218 2.59071 3.31016 3.75137 3.91695 3.97808 4.21948 4.31224 4.37061 4.41660 4.47314 4.57851 4.65190 4.80529 4.82772 4.90122 4.95540 4.99771 5.04129 5.11665 5.12478 5.19158 5.26676 5.28176 5.32418 5.38951 5.41966 5.55991 5.56886 5.57492 5.76321 5.84436 6.39447 6.57386 6.71905 6.97959 7.74036 8.06994 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.020502 B = 0.003205 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.406800 B = 8734.948992 C = 9919.543689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.109 4.109 4 C -0.084 4.084 5 H 0.068 0.932 6 C -0.152 4.152 7 C -0.114 4.114 8 C 0.126 3.874 9 N -0.737 5.737 10 C 0.588 3.412 11 O -0.606 6.606 12 C -0.469 4.469 13 S 0.010 5.990 14 C -0.191 4.191 15 C -0.130 4.130 16 C 0.111 3.889 17 C -0.417 4.417 18 H 0.083 0.917 19 C 0.035 3.965 20 N -0.793 5.793 21 Si 0.990 3.010 22 H -0.249 1.249 23 H -0.254 1.254 24 H -0.273 1.273 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.044 0.956 39 H 0.399 0.601 40 H 0.178 0.822 41 H 0.142 0.858 42 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.196 -5.313 0.402 15.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.146 4.146 4 C -0.103 4.103 5 H 0.087 0.913 6 C -0.209 4.209 7 C -0.151 4.151 8 C 0.003 3.997 9 N -0.390 5.390 10 C 0.384 3.616 11 O -0.493 6.493 12 C -0.588 4.588 13 S 0.266 5.734 14 C -0.325 4.325 15 C -0.162 4.162 16 C 0.100 3.900 17 C -0.448 4.448 18 H 0.101 0.899 19 C -0.185 4.185 20 N -0.418 5.418 21 Si 0.809 3.191 22 H -0.173 1.173 23 H -0.177 1.177 24 H -0.197 1.197 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.234 0.766 40 H 0.195 0.805 41 H 0.159 0.841 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.050 -5.551 0.623 16.053 hybrid contribution 2.074 -0.187 -0.111 2.085 sum -12.976 -5.738 0.512 14.198 Atomic orbital electron populations 1.21775 0.95419 1.01848 1.01900 1.21584 0.96174 0.96532 1.02121 1.21609 0.93271 0.97359 1.02384 1.21054 0.96235 0.94438 0.98607 0.91309 1.21952 1.00405 1.01406 0.97130 1.21786 0.91678 0.98516 1.03152 1.21315 0.95543 0.82612 1.00249 1.45702 1.06494 1.09057 1.77712 1.17086 0.81823 0.87407 0.75248 1.90610 1.56495 1.46290 1.55865 1.23081 0.96811 0.94409 1.44481 1.82260 1.10892 0.97183 1.83105 1.25455 0.95500 1.03129 1.08424 1.21625 0.98928 0.93294 1.02350 1.18408 0.91554 0.92539 0.87533 1.20014 0.92115 0.98255 1.34426 0.89927 1.27064 1.02914 0.97164 0.91388 1.69649 1.26681 1.19460 1.25966 0.85085 0.75671 0.78225 0.80103 1.17338 1.17730 1.19734 0.92412 0.92722 0.92613 0.91689 0.92255 0.91676 0.91589 0.92378 0.91315 0.94003 0.90549 0.90739 0.93378 0.93745 0.76593 0.80492 0.84077 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 71.98 0.71 -1.17 16 2 C -0.13 -1.80 5.69 30.60 0.17 -1.62 16 3 C -0.11 -1.71 4.68 30.59 0.14 -1.57 16 4 C -0.08 -1.64 2.39 -10.79 -0.03 -1.67 16 5 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 6 C -0.15 -3.02 8.71 71.99 0.63 -2.40 16 7 C -0.11 -2.63 4.80 30.59 0.15 -2.49 16 8 C 0.13 4.23 5.43 86.38 0.47 4.70 16 9 N -0.74 -29.56 5.55 -467.48 -2.59 -32.16 16 10 C 0.59 30.50 7.76 86.32 0.67 31.17 16 11 O -0.61 -35.80 14.45 -4.52 -0.07 -35.87 16 12 C -0.47 -24.62 6.51 24.67 0.16 -24.46 16 13 S 0.01 0.42 22.25 -56.49 -1.26 -0.84 16 14 C -0.19 -8.03 11.07 66.64 0.74 -7.29 16 15 C -0.13 -6.39 9.04 22.61 0.20 -6.19 16 16 C 0.11 6.19 5.67 -20.89 -0.12 6.07 16 17 C -0.42 -23.90 8.52 23.33 0.20 -23.70 16 18 H 0.08 5.09 6.03 -2.91 -0.02 5.07 16 19 C 0.03 1.74 5.39 85.37 0.46 2.20 16 20 N -0.79 -38.95 10.82 21.89 0.24 -38.71 16 21 Si 0.99 38.97 29.57 68.60 2.03 40.99 16 22 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 23 H -0.25 -9.04 7.11 99.48 0.71 -8.34 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.91 6.57 -2.39 -0.02 0.89 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.16 6.57 -2.39 -0.02 1.15 16 34 H 0.04 0.99 6.56 -2.39 -0.02 0.97 16 35 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.05 1.73 6.56 -2.38 -0.02 1.72 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.40 14.12 7.55 -92.71 -0.70 13.42 16 40 H 0.18 5.90 8.06 -2.91 -0.02 5.87 16 41 H 0.14 6.94 6.40 -2.91 -0.02 6.92 16 42 H 0.30 12.96 8.29 -92.71 -0.77 12.19 16 Total: -1.00 -65.56 351.69 3.22 -62.34 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 0.32 Total: 32.65 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 4.56 Total: -28.41 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -2.36 Total: -70.87 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.07 Total: -35.87 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 40.99 kcal Atomic # 16 Polarization: 0.42 SS G_CDS: -1.26 Total: -0.84 kcal Total: -65.56 3.22 -62.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881533646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.980 kcal (2) G-P(sol) polarization free energy of solvation -65.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds