Wall clock time and date at job start Tue Mar 31 2020 06:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33391 * 125.20648 * 2 1 4 4 C 1.38422 * 114.92446 * 179.97438 * 3 2 1 5 5 C 1.50701 * 122.53964 * 179.97438 * 4 3 2 6 6 C 1.33387 * 114.92004 * 0.24484 * 4 3 2 7 7 C 1.50704 * 125.20234 * 179.75688 * 6 4 3 8 8 C 1.50696 * 109.46937 * 90.00258 * 7 6 4 9 9 O 1.21279 * 120.00362 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99881 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00021 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47270 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.46582 * 299.99600 * 12 11 10 14 14 C 1.52995 * 109.47273 * 59.99458 * 12 11 10 15 15 C 1.50694 * 109.47445 * 179.97438 * 12 11 10 16 16 H 1.08004 * 120.00079 * 356.99764 * 15 12 11 17 17 C 1.37881 * 120.00397 * 177.00638 * 15 12 11 18 18 N 1.31515 * 119.99618 * 5.53318 * 17 15 12 19 19 Si 1.86800 * 120.00019 * 185.54013 * 17 15 12 20 20 H 1.48497 * 109.47068 * 84.99955 * 19 17 15 21 21 H 1.48503 * 109.46722 * 204.99731 * 19 17 15 22 22 H 1.48498 * 109.47075 * 324.99563 * 19 17 15 23 23 S 1.75884 * 125.20399 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46880 * 89.99904 * 1 2 3 25 25 H 1.09004 * 109.46909 * 209.99642 * 1 2 3 26 26 H 1.08995 * 109.47211 * 330.00241 * 1 2 3 27 27 H 1.07998 * 122.53571 * 359.97438 * 3 2 1 28 28 H 1.08993 * 109.47382 * 90.02092 * 5 4 3 29 29 H 1.09003 * 109.46858 * 330.01900 * 5 4 3 30 30 H 1.08996 * 109.46951 * 210.02235 * 5 4 3 31 31 H 1.09005 * 109.46834 * 209.99801 * 7 6 4 32 32 H 1.08998 * 109.46921 * 329.99941 * 7 6 4 33 33 H 0.96998 * 120.00000 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.46803 * 299.99567 * 11 10 8 35 35 H 1.08998 * 109.47693 * 59.99616 * 11 10 8 36 36 H 1.09000 * 109.47206 * 53.93501 * 13 12 11 37 37 H 1.09004 * 109.46848 * 173.93280 * 13 12 11 38 38 H 1.08996 * 109.47120 * 293.93114 * 13 12 11 39 39 H 1.08992 * 109.47228 * 60.00396 * 14 12 11 40 40 H 1.09003 * 109.47488 * 180.02562 * 14 12 11 41 41 H 1.09009 * 109.47204 * 299.99986 * 14 12 11 42 42 H 0.96994 * 119.99614 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6623 1.9482 0.0001 6 6 3.9751 -0.4477 -0.0042 7 6 5.3861 -0.9771 -0.0099 8 6 5.8606 -1.1576 1.4090 9 8 5.1256 -0.8831 2.3338 10 7 7.1021 -1.6233 1.6503 11 6 7.5632 -1.7994 3.0296 12 6 8.9958 -2.3367 3.0238 13 6 9.0324 -3.6831 2.2981 14 6 9.9100 -1.3438 2.3033 15 6 9.4703 -2.5172 4.4427 16 1 8.8340 -2.2277 5.2659 17 6 10.7170 -3.0518 4.6900 18 7 11.5347 -3.3030 3.6910 19 14 11.2444 -3.4196 6.4439 20 1 10.7472 -4.7618 6.8391 21 1 12.7267 -3.3955 6.5303 22 1 10.6786 -2.3936 7.3563 23 16 2.5209 -1.4372 0.0006 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.8669 2.0894 -0.0004 28 1 4.9093 2.2152 1.0275 29 1 4.2565 2.8194 -0.5142 30 1 5.5620 1.6095 -0.5136 31 1 5.4121 -1.9365 -0.5265 32 1 6.0373 -0.2699 -0.5236 33 1 7.6901 -1.8425 0.9106 34 1 7.5366 -0.8402 3.5468 35 1 6.9122 -2.5071 3.5429 36 1 8.5893 -3.5745 1.3081 37 1 10.0662 -4.0144 2.1990 38 1 8.4680 -4.4196 2.8700 39 1 9.8838 -0.3847 2.8202 40 1 10.9305 -1.7268 2.2987 41 1 9.5669 -1.2129 1.2769 42 1 12.4118 -3.6787 3.8650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891519935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:46 Heat of formation + Delta-G solvation = -27.173084 kcal Electronic energy + Delta-G solvation = -21390.466013 eV Core-core repulsion = 18268.428559 eV Total energy + Delta-G solvation = -3122.037455 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.52297 -38.23016 -36.33495 -33.41595 -33.24473 -31.09004 -30.11117 -28.33311 -25.91949 -25.74102 -25.24215 -23.99291 -21.64555 -20.26266 -18.83766 -18.21781 -17.16649 -16.87977 -15.75715 -15.28004 -14.96229 -14.68463 -14.55404 -14.18917 -13.58371 -13.38792 -13.24114 -13.07068 -12.88082 -12.77562 -12.58810 -12.19165 -12.05593 -11.64323 -11.48116 -11.43928 -11.28200 -11.18934 -10.86173 -10.70071 -10.64092 -10.38638 -10.21983 -9.63524 -9.56768 -9.27554 -8.80410 -8.45334 -8.41154 -8.30158 -8.19256 -6.03412 -4.12134 0.99750 1.64061 2.03172 2.69463 3.06584 3.28614 3.35033 3.38581 3.83190 4.40377 4.65354 4.73950 5.09915 5.10841 5.23787 5.24770 5.29050 5.32640 5.42057 5.47796 5.60526 5.68458 5.73009 5.96545 6.14657 6.23210 6.32913 6.44334 6.50679 6.59163 6.78461 6.80580 6.92392 7.00938 7.03620 7.34643 7.54843 7.69373 7.98653 8.05200 8.14878 8.37791 8.71919 8.88471 9.53370 10.98671 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.032507 B = 0.003024 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.144556 B = 9257.294039 C = 9407.206421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.185 4.185 3 C -0.133 4.133 4 C -0.095 4.095 5 C -0.094 4.094 6 C -0.155 4.155 7 C -0.074 4.074 8 C 0.504 3.496 9 O -0.539 6.539 10 N -0.718 5.718 11 C 0.133 3.867 12 C 0.056 3.944 13 C -0.129 4.129 14 C -0.130 4.130 15 C -0.508 4.508 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.275 1.275 23 S 0.103 5.897 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.135 0.865 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.397 0.603 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.007 0.993 37 H 0.081 0.919 38 H 0.029 0.971 39 H 0.026 0.974 40 H 0.085 0.915 41 H 0.006 0.994 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.059 6.231 -12.069 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.302 4.302 3 C -0.163 4.163 4 C -0.107 4.107 5 C -0.153 4.153 6 C -0.272 4.272 7 C -0.116 4.116 8 C 0.289 3.711 9 O -0.417 6.417 10 N -0.369 5.369 11 C 0.011 3.989 12 C 0.056 3.944 13 C -0.187 4.187 14 C -0.188 4.188 15 C -0.547 4.547 16 H 0.075 0.925 17 C -0.134 4.134 18 N -0.524 5.524 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.200 1.200 23 S 0.369 5.631 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.153 0.847 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.233 0.767 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.026 0.974 37 H 0.100 0.900 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.104 0.896 41 H 0.024 0.976 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.687 4.763 -11.409 19.974 hybrid contribution 0.937 1.105 0.674 1.598 sum -14.751 5.868 -10.735 19.164 Atomic orbital electron populations 1.20296 0.88044 1.03041 1.02416 1.24363 0.99712 0.95950 1.10218 1.19852 0.92295 0.99032 1.05136 1.18694 0.94731 0.94047 1.03217 1.20517 0.96635 0.95564 1.02569 1.23514 0.97223 0.95875 1.10615 1.20195 0.91736 1.03240 0.96414 1.20340 0.82286 0.77991 0.90518 1.90692 1.54907 1.50373 1.45711 1.46309 1.14318 1.65397 1.10886 1.21689 0.97563 0.99998 0.79686 1.18348 0.87880 0.92102 0.96106 1.21810 1.02953 0.98579 0.95348 1.21850 1.03844 0.98213 0.94896 1.20977 1.01021 1.41699 0.90960 0.92463 1.24874 0.96252 0.95292 0.96993 1.69823 1.08125 1.44145 1.30295 0.86601 0.77458 0.78876 0.85027 1.20616 1.21322 1.19960 1.84110 0.96320 1.09240 1.73431 0.90981 0.91426 0.90718 0.84699 0.90977 0.91768 0.91673 0.88250 0.87297 0.76748 0.92798 0.92796 0.97446 0.90006 0.95201 0.95461 0.89592 0.97551 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.38 36.00 0.37 -0.29 16 2 C -0.19 -2.16 6.51 -36.00 -0.23 -2.39 16 3 C -0.13 -1.58 9.85 -41.21 -0.41 -1.99 16 4 C -0.10 -1.24 5.80 -106.25 -0.62 -1.86 16 5 C -0.09 -1.04 9.87 36.01 0.36 -0.68 16 6 C -0.15 -2.13 5.00 -36.00 -0.18 -2.31 16 7 C -0.07 -0.95 5.87 -29.03 -0.17 -1.12 16 8 C 0.50 8.66 7.82 -10.99 -0.09 8.57 16 9 O -0.54 -11.41 16.03 5.56 0.09 -11.32 16 10 N -0.72 -12.56 4.90 -60.30 -0.30 -12.86 16 11 C 0.13 2.83 4.50 -4.04 -0.02 2.81 16 12 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 13 C -0.13 -2.89 8.03 37.16 0.30 -2.59 16 14 C -0.13 -2.90 8.10 37.15 0.30 -2.60 16 15 C -0.51 -13.33 8.01 -34.44 -0.28 -13.61 16 16 H 0.06 1.52 7.75 -52.48 -0.41 1.12 16 17 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 18 N -0.89 -23.56 9.45 55.43 0.52 -23.03 16 19 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 S 0.10 1.33 23.31 -107.50 -2.51 -1.18 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 30 H 0.06 0.65 6.59 -51.93 -0.34 0.31 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.11 1.14 6.64 -51.93 -0.34 0.79 16 33 H 0.40 6.16 6.16 -40.82 -0.25 5.90 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.01 0.13 6.71 -51.93 -0.35 -0.22 16 37 H 0.08 2.01 6.25 -51.93 -0.32 1.68 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 2.12 6.10 -51.93 -0.32 1.81 16 41 H 0.01 0.11 6.86 -51.92 -0.36 -0.25 16 42 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 350.78 15.07 5.29 5.29 Total: -1.00 -29.68 350.78 -9.23 -38.91 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.48 Total: 3.59 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -0.83 Total: -15.15 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.23 Total: -35.89 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.51 Total: -1.18 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.68 -9.23 -38.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891519935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.735 kcal (2) G-P(sol) polarization free energy of solvation -29.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds