Wall clock time and date at job start Tue Mar 31 2020 06:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33391 * 125.20648 * 2 1 4 4 C 1.38422 * 114.92446 * 179.97438 * 3 2 1 5 5 C 1.50701 * 122.53964 * 179.97438 * 4 3 2 6 6 C 1.33387 * 114.92004 * 0.24484 * 4 3 2 7 7 C 1.50704 * 125.20234 * 179.75688 * 6 4 3 8 8 C 1.50696 * 109.46937 * 90.00258 * 7 6 4 9 9 O 1.21279 * 120.00362 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99881 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00021 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47270 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.46582 * 299.99600 * 12 11 10 14 14 C 1.52995 * 109.47273 * 59.99458 * 12 11 10 15 15 C 1.50694 * 109.47445 * 179.97438 * 12 11 10 16 16 H 1.08004 * 120.00079 * 356.99764 * 15 12 11 17 17 C 1.37881 * 120.00397 * 177.00638 * 15 12 11 18 18 N 1.31515 * 119.99618 * 5.53318 * 17 15 12 19 19 Si 1.86800 * 120.00019 * 185.54013 * 17 15 12 20 20 H 1.48497 * 109.47068 * 84.99955 * 19 17 15 21 21 H 1.48503 * 109.46722 * 204.99731 * 19 17 15 22 22 H 1.48498 * 109.47075 * 324.99563 * 19 17 15 23 23 S 1.75884 * 125.20399 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.46880 * 89.99904 * 1 2 3 25 25 H 1.09004 * 109.46909 * 209.99642 * 1 2 3 26 26 H 1.08995 * 109.47211 * 330.00241 * 1 2 3 27 27 H 1.07998 * 122.53571 * 359.97438 * 3 2 1 28 28 H 1.08993 * 109.47382 * 90.02092 * 5 4 3 29 29 H 1.09003 * 109.46858 * 330.01900 * 5 4 3 30 30 H 1.08996 * 109.46951 * 210.02235 * 5 4 3 31 31 H 1.09005 * 109.46834 * 209.99801 * 7 6 4 32 32 H 1.08998 * 109.46921 * 329.99941 * 7 6 4 33 33 H 0.96998 * 120.00000 * 359.97438 * 10 8 7 34 34 H 1.09001 * 109.46803 * 299.99567 * 11 10 8 35 35 H 1.08998 * 109.47693 * 59.99616 * 11 10 8 36 36 H 1.09000 * 109.47206 * 53.93501 * 13 12 11 37 37 H 1.09004 * 109.46848 * 173.93280 * 13 12 11 38 38 H 1.08996 * 109.47120 * 293.93114 * 13 12 11 39 39 H 1.08992 * 109.47228 * 60.00396 * 14 12 11 40 40 H 1.09003 * 109.47488 * 180.02562 * 14 12 11 41 41 H 1.09009 * 109.47204 * 299.99986 * 14 12 11 42 42 H 0.96994 * 119.99614 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6623 1.9482 0.0001 6 6 3.9751 -0.4477 -0.0042 7 6 5.3861 -0.9771 -0.0099 8 6 5.8606 -1.1576 1.4090 9 8 5.1256 -0.8831 2.3338 10 7 7.1021 -1.6233 1.6503 11 6 7.5632 -1.7994 3.0296 12 6 8.9958 -2.3367 3.0238 13 6 9.0324 -3.6831 2.2981 14 6 9.9100 -1.3438 2.3033 15 6 9.4703 -2.5172 4.4427 16 1 8.8340 -2.2277 5.2659 17 6 10.7170 -3.0518 4.6900 18 7 11.5347 -3.3030 3.6910 19 14 11.2444 -3.4196 6.4439 20 1 10.7472 -4.7618 6.8391 21 1 12.7267 -3.3955 6.5303 22 1 10.6786 -2.3936 7.3563 23 16 2.5209 -1.4372 0.0006 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.8669 2.0894 -0.0004 28 1 4.9093 2.2152 1.0275 29 1 4.2565 2.8194 -0.5142 30 1 5.5620 1.6095 -0.5136 31 1 5.4121 -1.9365 -0.5265 32 1 6.0373 -0.2699 -0.5236 33 1 7.6901 -1.8425 0.9106 34 1 7.5366 -0.8402 3.5468 35 1 6.9122 -2.5071 3.5429 36 1 8.5893 -3.5745 1.3081 37 1 10.0662 -4.0144 2.1990 38 1 8.4680 -4.4196 2.8700 39 1 9.8838 -0.3847 2.8202 40 1 10.9305 -1.7268 2.2987 41 1 9.5669 -1.2129 1.2769 42 1 12.4118 -3.6787 3.8650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891519935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:45 Heat of formation + Delta-G solvation = -42.989245 kcal Electronic energy + Delta-G solvation = -21391.151853 eV Core-core repulsion = 18268.428559 eV Total energy + Delta-G solvation = -3122.723295 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.87715 -39.27477 -38.05285 -34.97097 -34.32724 -32.79988 -31.23021 -29.12742 -27.56142 -27.53138 -26.99132 -25.26375 -22.51420 -21.67381 -20.60703 -19.23135 -18.42781 -18.05101 -17.62318 -16.70322 -16.41136 -16.31790 -15.63487 -15.23247 -14.85101 -14.80752 -14.54511 -14.16921 -13.99526 -13.97971 -13.90194 -13.49381 -13.26352 -13.07596 -12.96294 -12.68024 -12.61642 -12.49274 -12.32894 -12.24408 -12.17113 -12.14263 -11.57161 -11.47864 -11.27058 -10.88175 -10.69519 -10.39484 -9.91952 -9.35774 -9.14915 -8.03795 -6.18136 0.05704 0.72670 1.10293 1.41807 1.44502 1.51947 1.71659 1.75846 2.38602 2.54470 3.20187 3.66754 3.92857 4.04877 4.20484 4.35117 4.44612 4.48550 4.52631 4.58650 4.62426 4.72523 4.73922 4.76406 4.85044 5.00731 5.03865 5.06147 5.11804 5.16236 5.19668 5.28836 5.37427 5.54529 5.60841 5.67293 5.68140 5.70367 6.14495 6.21840 6.43038 6.69943 6.85908 7.35755 7.49214 8.95635 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.032507 B = 0.003024 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.144556 B = 9257.294039 C = 9407.206421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.180 4.180 3 C -0.149 4.149 4 C -0.101 4.101 5 C -0.094 4.094 6 C -0.181 4.181 7 C -0.064 4.064 8 C 0.505 3.495 9 O -0.582 6.582 10 N -0.711 5.711 11 C 0.150 3.850 12 C 0.052 3.948 13 C -0.119 4.119 14 C -0.120 4.120 15 C -0.532 4.532 16 H 0.042 0.958 17 C 0.030 3.970 18 N -0.898 5.898 19 Si 0.943 3.057 20 H -0.279 1.279 21 H -0.282 1.282 22 H -0.277 1.277 23 S 0.073 5.927 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.157 0.843 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.122 0.878 32 H 0.138 0.862 33 H 0.410 0.590 34 H 0.036 0.964 35 H 0.034 0.966 36 H 0.041 0.959 37 H 0.060 0.940 38 H 0.016 0.984 39 H 0.017 0.983 40 H 0.062 0.938 41 H 0.040 0.960 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.833 6.919 -13.622 22.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.298 4.298 3 C -0.179 4.179 4 C -0.113 4.113 5 C -0.153 4.153 6 C -0.298 4.298 7 C -0.105 4.105 8 C 0.292 3.708 9 O -0.462 6.462 10 N -0.363 5.363 11 C 0.026 3.974 12 C 0.052 3.948 13 C -0.177 4.177 14 C -0.178 4.178 15 C -0.571 4.571 16 H 0.060 0.940 17 C -0.170 4.170 18 N -0.536 5.536 19 Si 0.770 3.230 20 H -0.205 1.205 21 H -0.208 1.208 22 H -0.202 1.202 23 S 0.339 5.661 24 H 0.108 0.892 25 H 0.088 0.912 26 H 0.107 0.893 27 H 0.174 0.826 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.141 0.859 32 H 0.156 0.844 33 H 0.248 0.752 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.451 5.449 -12.994 21.660 hybrid contribution 1.102 0.930 1.160 1.850 sum -15.349 6.379 -11.834 20.404 Atomic orbital electron populations 1.20429 0.85805 1.03844 1.03809 1.24815 1.01181 0.94971 1.08808 1.20159 0.92090 1.00180 1.05440 1.19084 0.95749 0.94373 1.02139 1.20565 0.96816 0.95922 1.01966 1.23688 0.97525 0.96307 1.12302 1.20203 0.91798 1.05313 0.93212 1.21106 0.81291 0.76352 0.92074 1.90674 1.55933 1.52010 1.47628 1.46120 1.14986 1.65607 1.09573 1.21207 0.96249 0.98289 0.81644 1.18340 0.88826 0.92864 0.94798 1.21658 1.01602 0.97590 0.96859 1.21687 1.02295 0.97154 0.96686 1.21276 1.01255 1.42156 0.92402 0.93967 1.25430 0.96353 0.95291 0.99906 1.69920 1.08155 1.44194 1.31350 0.85813 0.77197 0.78456 0.81583 1.20466 1.20754 1.20187 1.84144 0.97257 1.10694 1.74025 0.89201 0.91205 0.89282 0.82590 0.92551 0.89605 0.90608 0.85948 0.84444 0.75235 0.94606 0.94769 0.94063 0.92108 0.96505 0.96382 0.91928 0.94140 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.38 71.24 0.74 -0.42 16 2 C -0.18 -3.91 6.51 24.59 0.16 -3.75 16 3 C -0.15 -3.28 9.85 21.22 0.21 -3.07 16 4 C -0.10 -2.47 5.80 -20.92 -0.12 -2.59 16 5 C -0.09 -1.89 9.87 71.24 0.70 -1.18 16 6 C -0.18 -4.71 5.00 24.59 0.12 -4.58 16 7 C -0.06 -1.50 5.87 29.10 0.17 -1.33 16 8 C 0.50 16.75 7.82 87.66 0.69 17.43 16 9 O -0.58 -24.68 16.03 -3.03 -0.05 -24.73 16 10 N -0.71 -23.86 4.90 -463.07 -2.27 -26.13 16 11 C 0.15 6.40 4.50 86.38 0.39 6.79 16 12 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 13 C -0.12 -5.25 8.03 71.98 0.58 -4.67 16 14 C -0.12 -5.26 8.10 71.98 0.58 -4.68 16 15 C -0.53 -28.35 8.01 25.60 0.20 -28.15 16 16 H 0.04 2.31 7.75 -2.91 -0.02 2.29 16 17 C 0.03 1.60 5.13 84.66 0.43 2.03 16 18 N -0.90 -47.81 9.45 21.45 0.20 -47.61 16 19 Si 0.94 42.79 29.54 68.60 2.03 44.82 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 S 0.07 1.82 23.31 -56.49 -1.32 0.50 16 24 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.09 1.31 8.13 -2.39 -0.02 1.29 16 30 H 0.08 1.32 6.59 -2.39 -0.02 1.31 16 31 H 0.12 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.14 2.40 6.64 -2.39 -0.02 2.39 16 33 H 0.41 11.58 6.16 -92.71 -0.57 11.01 16 34 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.04 1.48 6.71 -2.39 -0.02 1.47 16 37 H 0.06 2.95 6.25 -2.38 -0.01 2.93 16 38 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 3.06 6.10 -2.39 -0.01 3.04 16 41 H 0.04 1.44 6.86 -2.38 -0.02 1.43 16 42 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 Total: -1.00 -64.67 350.78 3.87 -60.80 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.45 Total: 18.12 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 4.83 Total: -25.78 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: -2.07 Total: -73.74 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.05 Total: -24.73 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -1.32 Total: 0.50 kcal Total: -64.67 3.87 -60.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891519935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.814 kcal (2) G-P(sol) polarization free energy of solvation -64.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds