Wall clock time and date at job start Tue Mar 31 2020 06:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 110.45893 * 2 1 4 4 C 1.54478 * 110.51120 * 122.60384 * 2 1 3 5 5 O 1.44429 * 104.80277 * 94.66478 * 4 2 1 6 6 C 1.44426 * 105.27548 * 40.51212 * 5 4 2 7 7 C 1.54485 * 104.80375 * 319.49239 * 6 5 4 8 8 H 1.09003 * 110.50581 * 265.33303 * 7 6 5 9 9 N 1.46496 * 110.51368 * 142.62457 * 7 6 5 10 10 C 1.39922 * 120.00043 * 86.45017 * 9 7 6 11 11 C 1.38714 * 120.08141 * 359.72527 * 10 9 7 12 12 C 1.38220 * 120.01433 * 179.79175 * 11 10 9 13 13 C 1.38531 * 120.17761 * 0.45932 * 12 11 10 14 14 F 1.35097 * 119.91854 * 179.76545 * 13 12 11 15 15 C 1.38346 * 120.15977 * 359.79285 * 13 12 11 16 16 C 1.38730 * 119.98115 * 359.97438 * 15 13 12 17 17 O 1.35792 * 120.08770 * 179.97438 * 16 15 13 18 18 C 1.34808 * 117.00054 * 354.40133 * 17 16 15 19 19 H 1.07997 * 119.99784 * 5.05809 * 18 17 16 20 20 C 1.38629 * 120.00235 * 185.06307 * 18 17 16 21 21 N 1.31578 * 119.99787 * 359.97438 * 20 18 17 22 22 Si 1.86789 * 120.00171 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47281 * 59.99790 * 22 20 18 24 24 H 1.48500 * 109.47496 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47367 * 299.99829 * 22 20 18 26 26 H 1.08999 * 109.46870 * 298.85067 * 1 2 3 27 27 H 1.09000 * 109.47212 * 58.84547 * 1 2 3 28 28 H 1.08996 * 109.47412 * 178.84855 * 1 2 3 29 29 H 1.09001 * 109.47191 * 181.15621 * 3 2 1 30 30 H 1.09000 * 109.47190 * 301.14943 * 3 2 1 31 31 H 1.08998 * 109.47193 * 61.15155 * 3 2 1 32 32 H 1.08994 * 110.37220 * 335.83512 * 4 2 1 33 33 H 1.09003 * 110.46673 * 213.54318 * 4 2 1 34 34 H 1.09008 * 110.36989 * 78.31780 * 6 5 4 35 35 H 1.09001 * 110.37390 * 200.65640 * 6 5 4 36 36 H 0.97005 * 119.99638 * 266.45069 * 9 7 6 37 37 H 1.08000 * 119.98776 * 359.97438 * 11 10 9 38 38 H 1.07999 * 119.91029 * 180.21281 * 12 11 10 39 39 H 1.07995 * 120.01335 * 179.97438 * 15 13 12 40 40 H 0.97003 * 120.00087 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0648 1.4335 0.0000 4 6 2.0712 -0.7796 1.2188 5 8 2.3069 -2.1168 0.7266 6 6 2.8756 -1.9430 -0.5896 7 6 2.0714 -0.7829 -1.2171 8 1 1.2490 -1.1700 -1.8187 9 7 2.9457 0.0685 -2.0276 10 6 3.1900 -0.2538 -3.3671 11 6 2.6098 -1.3821 -3.9277 12 6 2.8486 -1.6968 -5.2523 13 6 3.6746 -0.8931 -6.0209 14 9 3.9083 -1.2082 -7.3137 15 6 4.2613 0.2311 -5.4677 16 6 4.0222 0.5558 -4.1403 17 8 4.5974 1.6584 -3.5950 18 6 5.4805 2.3302 -4.3606 19 1 5.6411 2.0334 -5.3865 20 6 6.1825 3.4019 -3.8311 21 7 5.9865 3.7638 -2.5814 22 14 7.4056 4.3331 -4.8922 23 1 6.7036 4.9094 -6.0671 24 1 8.0187 5.4272 -4.0969 25 1 8.4666 3.4036 -5.3565 26 1 -0.3633 0.4959 0.9001 27 1 -0.3633 0.5317 -0.8794 28 1 -0.3634 -1.0274 -0.0206 29 1 3.1544 1.4148 -0.0207 30 1 1.6937 1.9598 -0.8795 31 1 1.7272 1.9473 0.9001 32 1 1.3310 -0.7947 2.0188 33 1 3.0020 -0.3359 1.5724 34 1 3.9301 -1.6770 -0.5151 35 1 2.7534 -2.8519 -1.1788 36 1 3.3553 0.8556 -1.6355 37 1 1.9689 -2.0132 -3.3299 38 1 2.3932 -2.5738 -5.6880 39 1 4.9051 0.8557 -6.0690 40 1 6.4774 4.5139 -2.2109 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894427677.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:40 Heat of formation + Delta-G solvation = -86.106726 kcal Electronic energy + Delta-G solvation = -24359.703551 eV Core-core repulsion = 20668.897366 eV Total energy + Delta-G solvation = -3690.806185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.08572 -40.24671 -38.97418 -36.53064 -35.11953 -33.41510 -32.33545 -29.35294 -29.24606 -27.72885 -26.49310 -26.00239 -25.41205 -22.76172 -21.79739 -20.99956 -19.09103 -18.20985 -17.72738 -16.57321 -16.26277 -15.67932 -15.20988 -15.19345 -15.12455 -14.85466 -14.54814 -14.23236 -13.65754 -13.63367 -13.34865 -13.22995 -13.10120 -12.67019 -12.30581 -12.18478 -12.07070 -11.83163 -11.66627 -11.44850 -11.31293 -11.00133 -10.81186 -10.75401 -10.65974 -10.53423 -10.35999 -9.76248 -9.63250 -9.24471 -8.89133 -7.78503 -6.53525 -6.50229 -4.07783 2.06708 2.19235 3.10786 3.11641 3.13915 3.73698 3.91401 4.20486 4.37016 4.45650 4.71479 4.86400 4.93049 5.04207 5.13440 5.23786 5.26263 5.32297 5.55841 5.59097 5.59617 5.69303 5.77901 5.82655 5.87276 5.89282 5.92715 6.05015 6.08434 6.19102 6.35243 6.40007 6.53309 6.76181 6.80380 6.98201 7.05792 7.21223 7.57293 7.87820 7.98978 8.34144 8.94132 9.59153 10.65067 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.005683 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.083093 B = 4925.815240 C = 6702.967959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 C -0.142 4.142 4 C 0.053 3.947 5 O -0.376 6.376 6 C 0.026 3.974 7 C 0.135 3.865 8 H 0.089 0.911 9 N -0.736 5.736 10 C 0.150 3.850 11 C -0.145 4.145 12 C -0.195 4.195 13 C 0.088 3.912 14 F -0.157 7.157 15 C -0.240 4.240 16 C 0.122 3.878 17 O -0.176 6.176 18 C -0.387 4.387 19 H 0.091 0.909 20 C 0.041 3.959 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.413 0.587 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.138 0.862 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.960 -6.548 4.749 11.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 C -0.200 4.200 4 C -0.024 4.024 5 O -0.295 6.295 6 C -0.052 4.052 7 C 0.028 3.972 8 H 0.107 0.893 9 N -0.374 5.374 10 C 0.049 3.951 11 C -0.169 4.169 12 C -0.215 4.215 13 C 0.067 3.933 14 F -0.136 7.136 15 C -0.262 4.262 16 C 0.067 3.933 17 O -0.080 6.080 18 C -0.463 4.463 19 H 0.108 0.892 20 C -0.163 4.163 21 N -0.499 5.499 22 Si 0.764 3.236 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.253 0.747 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.156 0.844 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.024 -6.561 5.272 11.629 hybrid contribution 0.939 0.865 -0.882 1.552 sum -7.085 -5.696 4.390 10.096 Atomic orbital electron populations 1.21809 0.93053 1.02055 1.02179 1.22115 0.96885 0.96726 0.94850 1.21779 1.01593 0.93990 1.02608 1.23546 1.00132 0.82824 0.95898 1.89091 1.83245 1.25778 1.31341 1.24111 0.98021 0.99504 0.83576 1.22101 0.92904 0.90473 0.91746 0.89323 1.44658 1.53913 1.31042 1.07763 1.17109 0.98575 0.94665 0.84764 1.19968 1.04265 0.97686 0.94999 1.20303 1.04656 1.02004 0.94580 1.17238 1.01025 0.96727 0.78326 1.91381 1.93713 1.92913 1.35612 1.20799 1.08717 1.00398 0.96260 1.18578 0.95021 0.88951 0.90732 1.83881 1.51355 1.31788 1.41004 1.21240 1.17884 1.11851 0.95358 0.89155 1.25226 0.97830 0.96751 0.96496 1.70002 1.40235 1.26728 1.12901 0.85789 0.79774 0.78945 0.79046 1.19489 1.20299 1.19479 0.92309 0.92077 0.92186 0.91543 0.91183 0.92202 0.89171 0.92006 0.91470 0.88971 0.74667 0.86178 0.86507 0.84429 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.28 37.15 0.31 -1.07 16 2 C -0.10 -1.27 1.05 -152.94 -0.16 -1.43 16 3 C -0.14 -1.87 7.15 37.16 0.27 -1.60 16 4 C 0.05 0.63 6.73 37.93 0.26 0.88 16 5 O -0.38 -5.22 11.65 -35.23 -0.41 -5.63 16 6 C 0.03 0.36 7.35 37.94 0.28 0.64 16 7 C 0.14 1.88 2.68 -66.36 -0.18 1.70 16 8 H 0.09 1.18 6.23 -51.93 -0.32 0.86 16 9 N -0.74 -12.75 4.88 -50.48 -0.25 -13.00 16 10 C 0.15 2.92 6.67 -83.52 -0.56 2.36 16 11 C -0.15 -2.50 9.22 -39.41 -0.36 -2.86 16 12 C -0.20 -3.45 10.02 -39.48 -0.40 -3.85 16 13 C 0.09 1.75 7.29 -39.43 -0.29 1.47 16 14 F -0.16 -3.07 17.26 2.25 0.04 -3.03 16 15 C -0.24 -5.30 9.14 -39.36 -0.36 -5.66 16 16 C 0.12 2.81 6.67 -38.93 -0.26 2.55 16 17 O -0.18 -4.63 9.00 -0.02 0.00 -4.63 16 18 C -0.39 -10.36 9.49 30.88 0.29 -10.07 16 19 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -23.86 13.67 55.48 0.76 -23.11 16 22 Si 0.94 20.07 29.55 -169.99 -5.02 15.04 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.98 6.80 -51.93 -0.35 0.63 16 30 H 0.07 1.02 7.94 -51.93 -0.41 0.61 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.89 7.87 -51.93 -0.41 0.48 16 33 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 34 H 0.07 1.01 8.06 -51.92 -0.42 0.59 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.41 7.83 5.14 -40.82 -0.21 7.62 16 37 H 0.12 1.72 6.30 -52.49 -0.33 1.39 16 38 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.14 3.08 5.64 -52.49 -0.30 2.79 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 328.72 15.07 4.95 4.95 Total: -1.00 -28.19 328.72 -6.29 -34.49 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -5.11 Total: 10.88 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -1.26 Total: -15.96 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.51 Total: -36.11 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.41 Total: -10.27 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.04 Total: -3.03 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.19 -6.29 -34.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894427677.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.620 kcal (2) G-P(sol) polarization free energy of solvation -28.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds