Wall clock time and date at job start Tue Mar 31 2020 06:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 110.45893 * 2 1 4 4 C 1.54478 * 110.51120 * 122.60384 * 2 1 3 5 5 O 1.44429 * 104.80277 * 94.66478 * 4 2 1 6 6 C 1.44426 * 105.27548 * 40.51212 * 5 4 2 7 7 C 1.54485 * 104.80375 * 319.49239 * 6 5 4 8 8 H 1.09003 * 110.50581 * 265.33303 * 7 6 5 9 9 N 1.46496 * 110.51368 * 142.62457 * 7 6 5 10 10 C 1.39922 * 120.00043 * 86.45017 * 9 7 6 11 11 C 1.38714 * 120.08141 * 359.72527 * 10 9 7 12 12 C 1.38220 * 120.01433 * 179.79175 * 11 10 9 13 13 C 1.38531 * 120.17761 * 0.45932 * 12 11 10 14 14 F 1.35097 * 119.91854 * 179.76545 * 13 12 11 15 15 C 1.38346 * 120.15977 * 359.79285 * 13 12 11 16 16 C 1.38730 * 119.98115 * 359.97438 * 15 13 12 17 17 O 1.35792 * 120.08770 * 179.97438 * 16 15 13 18 18 C 1.34808 * 117.00054 * 354.40133 * 17 16 15 19 19 H 1.07997 * 119.99784 * 5.05809 * 18 17 16 20 20 C 1.38629 * 120.00235 * 185.06307 * 18 17 16 21 21 N 1.31578 * 119.99787 * 359.97438 * 20 18 17 22 22 Si 1.86789 * 120.00171 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47281 * 59.99790 * 22 20 18 24 24 H 1.48500 * 109.47496 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47367 * 299.99829 * 22 20 18 26 26 H 1.08999 * 109.46870 * 298.85067 * 1 2 3 27 27 H 1.09000 * 109.47212 * 58.84547 * 1 2 3 28 28 H 1.08996 * 109.47412 * 178.84855 * 1 2 3 29 29 H 1.09001 * 109.47191 * 181.15621 * 3 2 1 30 30 H 1.09000 * 109.47190 * 301.14943 * 3 2 1 31 31 H 1.08998 * 109.47193 * 61.15155 * 3 2 1 32 32 H 1.08994 * 110.37220 * 335.83512 * 4 2 1 33 33 H 1.09003 * 110.46673 * 213.54318 * 4 2 1 34 34 H 1.09008 * 110.36989 * 78.31780 * 6 5 4 35 35 H 1.09001 * 110.37390 * 200.65640 * 6 5 4 36 36 H 0.97005 * 119.99638 * 266.45069 * 9 7 6 37 37 H 1.08000 * 119.98776 * 359.97438 * 11 10 9 38 38 H 1.07999 * 119.91029 * 180.21281 * 12 11 10 39 39 H 1.07995 * 120.01335 * 179.97438 * 15 13 12 40 40 H 0.97003 * 120.00087 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0648 1.4335 0.0000 4 6 2.0712 -0.7796 1.2188 5 8 2.3069 -2.1168 0.7266 6 6 2.8756 -1.9430 -0.5896 7 6 2.0714 -0.7829 -1.2171 8 1 1.2490 -1.1700 -1.8187 9 7 2.9457 0.0685 -2.0276 10 6 3.1900 -0.2538 -3.3671 11 6 2.6098 -1.3821 -3.9277 12 6 2.8486 -1.6968 -5.2523 13 6 3.6746 -0.8931 -6.0209 14 9 3.9083 -1.2082 -7.3137 15 6 4.2613 0.2311 -5.4677 16 6 4.0222 0.5558 -4.1403 17 8 4.5974 1.6584 -3.5950 18 6 5.4805 2.3302 -4.3606 19 1 5.6411 2.0334 -5.3865 20 6 6.1825 3.4019 -3.8311 21 7 5.9865 3.7638 -2.5814 22 14 7.4056 4.3331 -4.8922 23 1 6.7036 4.9094 -6.0671 24 1 8.0187 5.4272 -4.0969 25 1 8.4666 3.4036 -5.3565 26 1 -0.3633 0.4959 0.9001 27 1 -0.3633 0.5317 -0.8794 28 1 -0.3634 -1.0274 -0.0206 29 1 3.1544 1.4148 -0.0207 30 1 1.6937 1.9598 -0.8795 31 1 1.7272 1.9473 0.9001 32 1 1.3310 -0.7947 2.0188 33 1 3.0020 -0.3359 1.5724 34 1 3.9301 -1.6770 -0.5151 35 1 2.7534 -2.8519 -1.1788 36 1 3.3553 0.8556 -1.6355 37 1 1.9689 -2.0132 -3.3299 38 1 2.3932 -2.5738 -5.6880 39 1 4.9051 0.8557 -6.0690 40 1 6.4774 4.5139 -2.2109 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894427677.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:39 Heat of formation + Delta-G solvation = -103.061703 kcal Electronic energy + Delta-G solvation = -24360.438774 eV Core-core repulsion = 20668.897366 eV Total energy + Delta-G solvation = -3691.541408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.64654 -41.44844 -40.51636 -38.17391 -36.34403 -34.63981 -34.25526 -30.95801 -30.56321 -28.84408 -27.80641 -27.25508 -26.98196 -24.10443 -23.30600 -22.42479 -20.27788 -19.93577 -19.33914 -18.00645 -17.56812 -17.00734 -16.77519 -16.51019 -16.47906 -16.18790 -15.96511 -15.76330 -15.38248 -15.17639 -14.90984 -14.37850 -14.18420 -13.98258 -13.68982 -13.46462 -13.43965 -13.26533 -12.90322 -12.86555 -12.63763 -12.44391 -12.24093 -12.11006 -11.91356 -11.74657 -11.54267 -11.49759 -10.90216 -10.79101 -10.57610 -9.43754 -8.46986 -8.05377 -6.09151 0.47167 0.60918 1.35077 1.43455 1.48688 2.15695 2.45532 2.76187 3.09560 3.11967 3.30958 3.40019 3.64066 3.73534 3.84507 4.01153 4.06479 4.21608 4.26453 4.28985 4.48646 4.59733 4.66629 4.70100 4.74602 4.81341 4.88399 4.96938 4.99472 5.00372 5.07636 5.11939 5.25947 5.32890 5.35322 5.43453 5.46364 5.73238 5.96471 6.03950 6.53884 6.79819 6.98908 7.74809 8.74344 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.005683 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.083093 B = 4925.815240 C = 6702.967959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 C -0.137 4.137 4 C 0.052 3.948 5 O -0.383 6.383 6 C 0.030 3.970 7 C 0.130 3.870 8 H 0.105 0.895 9 N -0.736 5.736 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.164 4.164 13 C 0.066 3.934 14 F -0.155 7.155 15 C -0.246 4.246 16 C 0.082 3.918 17 O -0.214 6.214 18 C -0.410 4.410 19 H 0.092 0.908 20 C -0.013 4.013 21 N -0.910 5.910 22 Si 1.008 2.992 23 H -0.262 1.262 24 H -0.270 1.270 25 H -0.263 1.263 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.110 0.890 36 H 0.402 0.598 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.122 0.878 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.769 -8.540 4.842 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.101 4.101 3 C -0.195 4.195 4 C -0.025 4.025 5 O -0.301 6.301 6 C -0.049 4.049 7 C 0.024 3.976 8 H 0.123 0.877 9 N -0.371 5.371 10 C 0.049 3.951 11 C -0.158 4.158 12 C -0.184 4.184 13 C 0.045 3.955 14 F -0.134 7.134 15 C -0.268 4.268 16 C 0.029 3.971 17 O -0.121 6.121 18 C -0.486 4.486 19 H 0.110 0.890 20 C -0.212 4.212 21 N -0.548 5.548 22 Si 0.828 3.172 23 H -0.186 1.186 24 H -0.194 1.194 25 H -0.187 1.187 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.128 0.872 36 H 0.241 0.759 37 H 0.178 0.822 38 H 0.175 0.825 39 H 0.140 0.860 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.873 -8.606 5.363 14.153 hybrid contribution 1.338 1.254 -0.905 2.045 sum -8.535 -7.352 4.458 12.115 Atomic orbital electron populations 1.21790 0.91041 1.02919 1.02885 1.22117 0.98328 0.95446 0.94165 1.21710 0.99917 0.95168 1.02700 1.23675 1.00649 0.81891 0.96283 1.89088 1.83096 1.26729 1.31216 1.24043 0.96827 0.99988 0.84034 1.22383 0.92642 0.90372 0.92215 0.87705 1.44861 1.53951 1.31019 1.07300 1.17420 0.97499 0.94615 0.85533 1.20411 1.03563 0.96722 0.95151 1.20801 1.01729 1.01658 0.94169 1.17340 1.02350 0.96941 0.78868 1.91382 1.93840 1.92802 1.35420 1.20857 1.08665 1.01119 0.96132 1.19050 0.96714 0.89555 0.91764 1.83852 1.52822 1.33684 1.41737 1.21602 1.18626 1.12583 0.95777 0.89047 1.26311 0.99542 0.97440 0.97864 1.70125 1.42052 1.27830 1.14744 0.84786 0.77312 0.77640 0.77420 1.18632 1.19449 1.18747 0.90568 0.92598 0.91100 0.94052 0.93078 0.90138 0.86530 0.92686 0.93549 0.87227 0.75943 0.82184 0.82540 0.86041 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.28 71.98 0.60 -1.67 16 2 C -0.10 -2.24 1.05 -51.17 -0.05 -2.29 16 3 C -0.14 -3.62 7.15 71.98 0.51 -3.11 16 4 C 0.05 1.11 6.73 72.48 0.49 1.60 16 5 O -0.38 -9.69 11.65 -148.98 -1.74 -11.43 16 6 C 0.03 0.75 7.35 72.49 0.53 1.29 16 7 C 0.13 3.36 2.68 46.01 0.12 3.48 16 8 H 0.11 2.39 6.23 -2.39 -0.01 2.38 16 9 N -0.74 -25.54 4.88 -313.62 -1.53 -27.07 16 10 C 0.15 5.85 6.67 38.27 0.26 6.11 16 11 C -0.14 -4.20 9.22 22.38 0.21 -3.99 16 12 C -0.16 -5.20 10.02 22.34 0.22 -4.98 16 13 C 0.07 2.56 7.29 22.37 0.16 2.72 16 14 F -0.16 -5.86 17.26 44.97 0.78 -5.08 16 15 C -0.25 -11.15 9.14 22.41 0.20 -10.94 16 16 C 0.08 3.89 6.67 22.69 0.15 4.04 16 17 O -0.21 -11.98 9.00 -22.98 -0.21 -12.18 16 18 C -0.41 -23.17 9.49 67.91 0.64 -22.52 16 19 H 0.09 4.92 5.21 -2.91 -0.02 4.91 16 20 C -0.01 -0.71 5.49 84.82 0.47 -0.25 16 21 N -0.91 -52.87 13.67 21.61 0.30 -52.57 16 22 Si 1.01 42.44 29.55 68.60 2.03 44.47 16 23 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 26 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.04 1.29 6.80 -2.39 -0.02 1.27 16 30 H 0.05 1.53 7.94 -2.39 -0.02 1.51 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.12 1.91 7.87 -2.39 -0.02 1.89 16 33 H 0.05 1.26 7.87 -2.39 -0.02 1.24 16 34 H 0.05 1.38 8.06 -2.38 -0.02 1.36 16 35 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.40 16.01 5.14 -92.70 -0.48 15.54 16 37 H 0.16 3.73 6.30 -2.91 -0.02 3.71 16 38 H 0.16 3.82 8.06 -2.91 -0.02 3.79 16 39 H 0.12 5.75 5.64 -2.91 -0.02 5.74 16 40 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -64.52 328.72 4.74 -59.79 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: 0.60 Total: 34.59 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 4.52 Total: -30.51 kcal Atomic # 7 Polarization: -78.41 SS G_CDS: -1.24 Total: -79.64 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -1.94 Total: -23.61 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 0.78 Total: -5.08 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -64.52 4.74 -59.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894427677.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.275 kcal (2) G-P(sol) polarization free energy of solvation -64.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds