Wall clock time and date at job start Tue Mar 31 2020 07:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.33817 * 124.52628 * 90.00287 * 5 4 2 7 7 C 1.37467 * 115.10163 * 179.97438 * 6 5 4 8 8 C 1.36640 * 113.30063 * 0.02562 * 7 6 5 9 9 C 1.46586 * 125.46220 * 179.97438 * 8 7 6 10 10 O 1.21707 * 119.99518 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00627 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00410 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.47010 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.46753 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.46917 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00028 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99742 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99993 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99678 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47455 * 89.99917 * 19 17 15 21 21 H 1.48501 * 109.46917 * 210.00511 * 19 17 15 22 22 H 1.48506 * 109.47304 * 329.99852 * 19 17 15 23 23 S 1.70619 * 124.52070 * 269.69500 * 5 4 2 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 31 31 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 32 32 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 33 33 H 1.07998 * 122.44508 * 359.94020 * 6 5 4 34 34 H 1.08005 * 123.34736 * 179.97438 * 7 6 5 35 35 H 0.97004 * 119.99485 * 0.02562 * 11 9 8 36 36 H 1.08989 * 109.47013 * 300.00349 * 12 11 9 37 37 H 1.09000 * 109.46895 * 60.00284 * 12 11 9 38 38 H 1.08999 * 109.46926 * 300.00205 * 13 12 11 39 39 H 1.09000 * 109.47162 * 60.00323 * 13 12 11 40 40 H 1.08994 * 109.47537 * 300.00257 * 14 13 12 41 41 H 1.09000 * 109.47072 * 60.00208 * 14 13 12 42 42 H 0.97004 * 119.99295 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.2072 -1.8511 -0.6370 7 6 5.5772 -1.7512 -0.6895 8 6 6.0128 -0.6110 -1.3036 9 6 7.4156 -0.2357 -1.5040 10 8 8.3038 -0.9674 -1.1077 11 7 7.7219 0.9195 -2.1269 12 6 9.1239 1.2948 -2.3266 13 6 9.1933 2.6402 -3.0519 14 6 10.6575 3.0318 -3.2610 15 6 10.7259 4.3566 -3.9760 16 1 9.8162 4.8679 -4.2538 17 6 11.9501 4.9159 -4.2754 18 7 13.0580 4.2930 -3.9375 19 14 12.0350 6.5585 -5.1610 20 1 12.0552 7.6582 -4.1635 21 1 13.2698 6.6138 -5.9841 22 1 10.8473 6.7090 -6.0397 23 16 4.6211 0.3308 -1.8214 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 1.7517 -0.1583 -2.1369 33 1 3.7044 -2.6922 -0.1831 34 1 6.2430 -2.4992 -0.2849 35 1 7.0140 1.5029 -2.4423 36 1 9.6190 1.3779 -1.3592 37 1 9.6222 0.5325 -2.9255 38 1 8.6980 2.5574 -4.0193 39 1 8.6951 3.4022 -2.4526 40 1 11.1532 3.1144 -2.2939 41 1 11.1553 2.2696 -3.8605 42 1 13.9192 4.6868 -4.1478 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931969249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:19 Heat of formation + Delta-G solvation = -44.998040 kcal Electronic energy + Delta-G solvation = -20273.959189 eV Core-core repulsion = 17151.148787 eV Total energy + Delta-G solvation = -3122.810403 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.62715 -38.41539 -36.30926 -35.37221 -33.34199 -31.50817 -30.72490 -27.72501 -27.56846 -26.23757 -24.01204 -23.07510 -21.20142 -20.77742 -20.57808 -19.00940 -17.93279 -16.55254 -16.15120 -15.79671 -15.41049 -15.24655 -14.83529 -14.63017 -14.43401 -13.98123 -13.91143 -13.50261 -12.92298 -12.72570 -12.60797 -12.38217 -12.29357 -12.09219 -11.84693 -11.74193 -11.39358 -11.28439 -11.13946 -11.03014 -10.90962 -10.74948 -10.60337 -10.05166 -9.88201 -9.43003 -9.12987 -8.99466 -8.75448 -8.69235 -8.37499 -6.02084 -4.05180 0.34743 1.25880 1.68824 2.23776 3.27148 3.30717 3.31316 3.37275 3.40338 4.25463 4.43499 4.44102 4.48546 4.82801 4.86685 4.96264 5.13585 5.20181 5.25854 5.33636 5.33710 5.42313 5.48842 5.53683 5.65243 5.72952 5.75691 5.79466 5.88859 5.93854 5.99623 6.14067 6.18205 6.41044 6.57827 6.79594 6.98070 7.60943 7.63048 7.75323 7.96505 8.27168 8.37885 9.01354 9.58959 11.09192 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.022993 B = 0.002556 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.456457 B =10950.080164 C =11952.345001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.158 4.158 4 C -0.047 4.047 5 C -0.193 4.193 6 C -0.152 4.152 7 C -0.057 4.057 8 C -0.263 4.263 9 C 0.583 3.417 10 O -0.533 6.533 11 N -0.721 5.721 12 C 0.117 3.883 13 C -0.122 4.122 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 S 0.203 5.797 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.395 0.605 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.299 -10.478 7.090 29.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.215 4.215 4 C -0.086 4.086 5 C -0.312 4.312 6 C -0.183 4.183 7 C -0.090 4.090 8 C -0.383 4.383 9 C 0.368 3.632 10 O -0.412 6.412 11 N -0.371 5.371 12 C -0.005 4.005 13 C -0.160 4.160 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 S 0.471 5.529 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.229 0.771 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -25.603 -9.581 6.581 28.118 hybrid contribution -0.008 -0.242 0.140 0.280 sum -25.612 -9.824 6.721 28.242 Atomic orbital electron populations 1.21841 0.94669 1.01842 1.02101 1.21132 0.95715 0.96678 0.97648 1.22008 1.01851 0.95560 1.02097 1.20318 0.87297 1.02095 0.98937 1.24194 1.01054 1.00109 1.05871 1.19932 0.93309 1.00505 1.04574 1.20736 0.95145 0.96299 0.96799 1.24742 0.97183 1.02554 1.13865 1.17002 0.86288 0.81600 0.78269 1.90828 1.47879 1.51733 1.50767 1.46113 1.10287 1.21557 1.59174 1.21715 0.79400 0.98272 1.01156 1.21909 1.02447 0.92960 0.98650 1.19030 0.88485 0.96493 0.97363 1.21197 0.92233 1.05040 1.37595 0.92629 1.25035 0.95832 0.97661 0.95977 1.69969 0.97446 1.38662 1.47165 0.86574 0.77502 0.84094 0.79699 1.20655 1.21205 1.19893 1.83052 0.93795 1.21872 1.54190 0.92507 0.92586 0.92382 0.90742 0.92049 0.92454 0.92332 0.89792 0.90522 0.84012 0.83040 0.77113 0.91427 0.91414 0.92641 0.92642 0.96211 0.96204 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.19 37.16 0.34 -0.37 16 2 C -0.09 -0.56 2.91 -90.62 -0.26 -0.82 16 3 C -0.16 -1.06 8.88 37.16 0.33 -0.73 16 4 C -0.05 -0.30 5.12 -27.89 -0.14 -0.44 16 5 C -0.19 -1.65 4.90 -35.86 -0.18 -1.83 16 6 C -0.15 -1.39 9.99 -41.41 -0.41 -1.80 16 7 C -0.06 -0.65 10.01 -40.44 -0.40 -1.06 16 8 C -0.26 -3.40 6.45 -36.79 -0.24 -3.64 16 9 C 0.58 9.48 7.78 -12.90 -0.10 9.38 16 10 O -0.53 -10.55 16.84 5.18 0.09 -10.47 16 11 N -0.72 -11.14 5.55 -61.65 -0.34 -11.48 16 12 C 0.12 2.11 5.67 -4.04 -0.02 2.09 16 13 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 19 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 S 0.20 1.97 20.56 -107.50 -2.21 -0.24 16 24 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.48 6.15 -51.93 -0.32 0.16 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.15 1.70 8.06 -52.48 -0.42 1.28 16 35 H 0.40 5.13 7.59 -40.82 -0.31 4.82 16 36 H 0.07 1.28 8.14 -51.94 -0.42 0.86 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -32.13 362.71 -10.00 -42.13 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.93 Total: -1.08 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -1.78 Total: -14.69 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.39 Total: -37.60 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.21 Total: -0.24 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.13 -10.00 -42.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931969249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.871 kcal (2) G-P(sol) polarization free energy of solvation -32.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds