Wall clock time and date at job start Tue Mar 31 2020 07:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 C 1.50695 * 109.46942 * 185.00287 * 4 2 1 6 6 C 1.33817 * 124.52628 * 90.00287 * 5 4 2 7 7 C 1.37467 * 115.10163 * 179.97438 * 6 5 4 8 8 C 1.36640 * 113.30063 * 0.02562 * 7 6 5 9 9 C 1.46586 * 125.46220 * 179.97438 * 8 7 6 10 10 O 1.21707 * 119.99518 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00627 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00410 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.47010 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.46753 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.46917 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00028 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99742 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99993 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99678 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47455 * 89.99917 * 19 17 15 21 21 H 1.48501 * 109.46917 * 210.00511 * 19 17 15 22 22 H 1.48506 * 109.47304 * 329.99852 * 19 17 15 23 23 S 1.70619 * 124.52070 * 269.69500 * 5 4 2 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 31 31 H 1.08998 * 109.47192 * 305.00392 * 4 2 1 32 32 H 1.08998 * 109.46934 * 65.00238 * 4 2 1 33 33 H 1.07998 * 122.44508 * 359.94020 * 6 5 4 34 34 H 1.08005 * 123.34736 * 179.97438 * 7 6 5 35 35 H 0.97004 * 119.99485 * 0.02562 * 11 9 8 36 36 H 1.08989 * 109.47013 * 300.00349 * 12 11 9 37 37 H 1.09000 * 109.46895 * 60.00284 * 12 11 9 38 38 H 1.08999 * 109.46926 * 300.00205 * 13 12 11 39 39 H 1.09000 * 109.47162 * 60.00323 * 13 12 11 40 40 H 1.08994 * 109.47537 * 300.00257 * 14 13 12 41 41 H 1.09000 * 109.47072 * 60.00208 * 14 13 12 42 42 H 0.97004 * 119.99295 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 6 4.2072 -1.8511 -0.6370 7 6 5.5772 -1.7512 -0.6895 8 6 6.0128 -0.6110 -1.3036 9 6 7.4156 -0.2357 -1.5040 10 8 8.3038 -0.9674 -1.1077 11 7 7.7219 0.9195 -2.1269 12 6 9.1239 1.2948 -2.3266 13 6 9.1933 2.6402 -3.0519 14 6 10.6575 3.0318 -3.2610 15 6 10.7259 4.3566 -3.9760 16 1 9.8162 4.8679 -4.2538 17 6 11.9501 4.9159 -4.2754 18 7 13.0580 4.2930 -3.9375 19 14 12.0350 6.5585 -5.1610 20 1 12.0552 7.6582 -4.1635 21 1 13.2698 6.6138 -5.9841 22 1 10.8473 6.7090 -6.0397 23 16 4.6211 0.3308 -1.8214 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 1.7517 -0.1583 -2.1369 33 1 3.7044 -2.6922 -0.1831 34 1 6.2430 -2.4992 -0.2849 35 1 7.0140 1.5029 -2.4423 36 1 9.6190 1.3779 -1.3592 37 1 9.6222 0.5325 -2.9255 38 1 8.6980 2.5574 -4.0193 39 1 8.6951 3.4022 -2.4526 40 1 11.1532 3.1144 -2.2939 41 1 11.1553 2.2696 -3.8605 42 1 13.9192 4.6868 -4.1478 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931969249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:18 Heat of formation + Delta-G solvation = -63.356955 kcal Electronic energy + Delta-G solvation = -20274.755292 eV Core-core repulsion = 17151.148787 eV Total energy + Delta-G solvation = -3123.606505 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.86854 -39.19130 -37.13896 -36.74380 -35.24458 -33.19867 -31.64177 -29.09939 -28.00799 -27.53797 -25.22461 -24.37358 -22.43355 -22.32097 -21.24896 -20.06024 -18.88763 -18.53003 -17.20201 -16.91311 -16.81814 -16.46010 -16.04825 -15.64123 -15.52195 -15.22501 -14.68719 -14.45695 -14.26059 -13.80836 -13.74582 -13.51993 -13.33409 -13.15152 -12.89116 -12.76008 -12.67594 -12.57796 -12.40153 -11.96597 -11.89148 -11.72116 -11.70950 -11.63594 -11.51409 -11.28887 -11.08910 -10.55880 -10.30878 -9.63061 -9.49980 -8.19851 -6.31407 -0.53488 0.43947 0.89364 1.36658 1.41729 1.43240 1.54183 2.05176 2.12193 2.42323 3.13905 3.65617 3.76741 3.97991 4.02586 4.11860 4.16217 4.25748 4.38461 4.43022 4.50282 4.72287 4.77153 4.83607 4.89518 4.89717 4.95897 5.01994 5.04926 5.10792 5.14296 5.19423 5.30230 5.30713 5.38555 5.45804 5.50251 5.52050 5.68389 5.82904 6.21047 6.37643 6.85628 7.02893 7.38090 8.92279 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.022993 B = 0.002556 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.456457 B =10950.080164 C =11952.345001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.161 4.161 4 C -0.048 4.048 5 C -0.175 4.175 6 C -0.160 4.160 7 C -0.052 4.052 8 C -0.306 4.306 9 C 0.582 3.418 10 O -0.580 6.580 11 N -0.713 5.713 12 C 0.129 3.871 13 C -0.103 4.103 14 C 0.024 3.976 15 C -0.541 4.541 16 H 0.067 0.933 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.260 1.260 23 S 0.232 5.768 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.168 0.832 34 H 0.146 0.854 35 H 0.409 0.591 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.069 0.931 40 H -0.007 1.007 41 H -0.007 1.007 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.643 -9.782 6.584 31.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.219 4.219 4 C -0.087 4.087 5 C -0.295 4.295 6 C -0.190 4.190 7 C -0.086 4.086 8 C -0.426 4.426 9 C 0.370 3.630 10 O -0.462 6.462 11 N -0.364 5.364 12 C 0.006 3.994 13 C -0.141 4.141 14 C -0.014 4.014 15 C -0.579 4.579 16 H 0.085 0.915 17 C -0.202 4.202 18 N -0.575 5.575 19 Si 0.793 3.207 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.184 1.184 23 S 0.501 5.499 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.104 0.896 33 H 0.185 0.815 34 H 0.164 0.836 35 H 0.245 0.755 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.012 0.988 41 H 0.012 0.988 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -28.992 -8.865 6.064 30.918 hybrid contribution 0.932 -0.501 0.339 1.111 sum -28.060 -9.366 6.403 30.267 Atomic orbital electron populations 1.21817 0.93535 1.02502 1.02342 1.21108 0.96587 0.95949 0.97260 1.22047 1.00968 0.96348 1.02535 1.20476 0.85317 1.03472 0.99465 1.24615 1.02247 0.98978 1.03701 1.20098 0.92147 1.01668 1.05055 1.20934 0.96414 0.95556 0.95686 1.24462 0.96392 1.04591 1.17160 1.17448 0.87512 0.80877 0.77130 1.90791 1.49698 1.53021 1.52709 1.45878 1.09386 1.21888 1.59204 1.21334 0.80972 0.97103 0.99998 1.21622 0.98668 0.93945 0.99827 1.18938 0.91790 0.95393 0.95247 1.21667 0.92808 1.05876 1.37527 0.91497 1.26041 0.95442 1.01869 0.96843 1.70117 0.98134 1.40713 1.48538 0.85397 0.77862 0.78944 0.78532 1.19792 1.21037 1.18396 1.82901 0.92196 1.21304 1.53524 0.92129 0.91737 0.92339 0.91119 0.93381 0.91926 0.92121 0.87917 0.89577 0.81459 0.83604 0.75475 0.92726 0.92704 0.91278 0.91268 0.98839 0.98826 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.19 71.98 0.66 -0.30 16 2 C -0.09 -0.82 2.91 -10.79 -0.03 -0.85 16 3 C -0.16 -1.81 8.88 71.98 0.64 -1.17 16 4 C -0.05 -0.44 5.12 29.85 0.15 -0.29 16 5 C -0.18 -2.55 4.90 24.68 0.12 -2.43 16 6 C -0.16 -2.56 9.99 21.08 0.21 -2.35 16 7 C -0.05 -1.16 10.01 21.71 0.22 -0.94 16 8 C -0.31 -7.82 6.45 24.08 0.16 -7.67 16 9 C 0.58 19.38 7.78 86.42 0.67 20.05 16 10 O -0.58 -24.01 16.84 -4.37 -0.07 -24.09 16 11 N -0.71 -22.14 5.55 -467.17 -2.59 -24.73 16 12 C 0.13 4.81 5.67 86.38 0.49 5.30 16 13 C -0.10 -4.06 5.27 30.60 0.16 -3.90 16 14 C 0.02 1.26 4.97 29.85 0.15 1.41 16 15 C -0.54 -30.34 9.11 25.60 0.23 -30.10 16 16 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 17 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 18 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 19 Si 0.97 43.93 29.54 68.60 2.03 45.95 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 22 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 23 S 0.23 4.10 20.56 -56.49 -1.16 2.94 16 24 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.66 6.15 -2.39 -0.01 0.65 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 34 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.41 10.27 7.59 -92.71 -0.70 9.57 16 36 H 0.05 2.16 8.14 -2.39 -0.02 2.15 16 37 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 40 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 41 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 42 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -70.78 362.71 3.07 -67.71 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.29 Total: 12.34 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 4.29 Total: -23.02 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -2.31 Total: -81.84 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.07 Total: -24.09 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -1.16 Total: 2.94 kcal Total: -70.78 3.07 -67.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931969249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.357 kcal (2) G-P(sol) polarization free energy of solvation -70.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds