Wall clock time and date at job start Tue Mar 31 2020 08:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46949 * 2 1 4 4 C 1.52992 * 109.47360 * 240.00091 * 2 1 3 5 5 O 1.45198 * 109.47195 * 119.99642 * 2 1 3 6 6 C 1.34230 * 116.99822 * 60.00026 * 5 2 1 7 7 O 1.20822 * 119.99798 * 0.02562 * 6 5 2 8 8 C 1.50695 * 119.99760 * 179.97438 * 6 5 2 9 9 H 1.09001 * 109.47565 * 320.00584 * 8 6 5 10 10 N 1.46505 * 109.47248 * 199.99988 * 8 6 5 11 11 C 1.36930 * 120.00222 * 294.36218 * 10 8 6 12 12 H 1.08001 * 120.00293 * 2.60050 * 11 10 8 13 13 C 1.38809 * 120.00499 * 182.60227 * 11 10 8 14 14 N 1.31626 * 119.99457 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00522 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.46980 * 60.00054 * 15 13 11 17 17 H 1.48495 * 109.47241 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47105 * 300.00355 * 15 13 11 19 19 C 1.50707 * 109.47441 * 80.00392 * 8 6 5 20 20 C 1.38238 * 119.97785 * 157.00411 * 19 8 6 21 21 C 1.38193 * 120.02649 * 180.02562 * 20 19 8 22 22 C 1.38458 * 119.97452 * 359.97438 * 21 20 19 23 23 F 1.35100 * 120.02701 * 179.97438 * 22 21 20 24 24 C 1.38460 * 119.94778 * 0.25606 * 22 21 20 25 25 C 1.38201 * 119.97416 * 359.51324 * 24 22 21 26 26 H 1.09004 * 109.47270 * 300.00230 * 1 2 3 27 27 H 1.09001 * 109.47161 * 60.00406 * 1 2 3 28 28 H 1.09000 * 109.47263 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47396 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47343 * 299.99599 * 3 2 1 31 31 H 1.09004 * 109.47322 * 59.99802 * 3 2 1 32 32 H 1.09006 * 109.47003 * 299.99785 * 4 2 1 33 33 H 1.09001 * 109.47389 * 59.99642 * 4 2 1 34 34 H 1.09000 * 109.47337 * 180.02562 * 4 2 1 35 35 H 0.97001 * 119.99562 * 114.35563 * 10 8 6 36 36 H 0.97005 * 119.99760 * 179.97438 * 14 13 11 37 37 H 1.08002 * 119.98726 * 359.97438 * 20 19 8 38 38 H 1.08007 * 120.01508 * 180.02562 * 21 20 19 39 39 H 1.08007 * 120.01285 * 179.74225 * 24 22 21 40 40 H 1.07999 * 119.98721 * 180.25086 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9683 1.3379 7 8 0.9567 -2.5027 0.5079 8 6 2.1183 -2.7435 2.5437 9 1 3.1540 -2.4854 2.7644 10 7 2.0207 -4.1792 2.2686 11 6 0.7944 -4.7581 2.0782 12 1 -0.0976 -4.1494 2.0890 13 6 0.6978 -6.1273 1.8713 14 7 1.7850 -6.8691 1.8577 15 14 -0.9751 -6.9170 1.6122 16 1 -1.6208 -6.3265 0.4123 17 1 -0.8069 -8.3791 1.4141 18 1 -1.8274 -6.6732 2.8035 19 6 1.2516 -2.3989 3.7274 20 6 1.1479 -3.2801 4.7875 21 6 0.3531 -2.9653 5.8732 22 6 -0.3393 -1.7666 5.8993 23 9 -1.1171 -1.4580 6.9599 24 6 -0.2385 -0.8869 4.8348 25 6 0.5607 -1.2017 3.7522 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2489 35 1 2.8248 -4.7197 2.2213 36 1 1.7175 -7.8260 1.7135 37 1 1.6878 -4.2153 4.7668 38 1 0.2726 -3.6538 6.7015 39 1 -0.7815 0.0466 4.8522 40 1 0.6427 -0.5138 2.9236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932461077.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:09 Heat of formation + Delta-G solvation = -91.049679 kcal Electronic energy + Delta-G solvation = -24738.623164 eV Core-core repulsion = 21047.602636 eV Total energy + Delta-G solvation = -3691.020528 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.58743 -40.41338 -38.65682 -36.58991 -34.58777 -33.69616 -31.86579 -30.74097 -29.40030 -27.27756 -27.20934 -26.42149 -23.69103 -22.54277 -22.09120 -20.48787 -19.00602 -17.72703 -17.37544 -16.48375 -16.21067 -15.87980 -15.34759 -15.26863 -14.98320 -14.67083 -14.03493 -13.82031 -13.68322 -13.46936 -13.25852 -13.05532 -12.74253 -12.59820 -12.32972 -12.04424 -11.82150 -11.69564 -11.60588 -11.35048 -11.07170 -10.94623 -10.84296 -10.83322 -10.57915 -10.17900 -9.95799 -9.85096 -9.37717 -9.06771 -8.67362 -8.11799 -7.26388 -5.88219 -3.18750 1.51936 1.67198 3.02067 3.17284 3.44887 3.46492 3.49888 4.02311 4.52898 4.61515 4.91075 4.92539 5.04729 5.09289 5.19802 5.21333 5.30641 5.53040 5.56048 5.65015 5.69164 5.72816 5.78688 5.84717 5.87011 5.91471 6.01647 6.07029 6.17166 6.33898 6.38351 6.45745 6.51565 6.55385 6.72056 7.01663 7.13939 7.30686 7.72589 8.23716 8.65383 9.39947 9.78539 10.16413 11.32818 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.009655 B = 0.007842 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.308610 B = 3569.500505 C = 5625.577671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.113 3.887 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.367 6.367 6 C 0.432 3.568 7 O -0.470 6.470 8 C 0.221 3.779 9 H 0.101 0.899 10 N -0.684 5.684 11 C -0.226 4.226 12 H 0.075 0.925 13 C -0.004 4.004 14 N -0.930 5.930 15 Si 0.907 3.093 16 H -0.284 1.284 17 H -0.291 1.291 18 H -0.284 1.284 19 C -0.083 4.083 20 C -0.038 4.038 21 C -0.161 4.161 22 C 0.085 3.915 23 F -0.149 7.149 24 C -0.162 4.162 25 C -0.094 4.094 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.395 0.605 36 H 0.258 0.742 37 H 0.145 0.855 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 14.592 1.851 14.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.076 3.924 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.285 6.285 6 C 0.269 3.731 7 O -0.353 6.353 8 C 0.106 3.894 9 H 0.119 0.881 10 N -0.322 5.322 11 C -0.356 4.356 12 H 0.093 0.907 13 C -0.200 4.200 14 N -0.578 5.578 15 Si 0.737 3.263 16 H -0.211 1.211 17 H -0.217 1.217 18 H -0.210 1.210 19 C -0.085 4.085 20 C -0.056 4.056 21 C -0.179 4.179 22 C 0.066 3.934 23 F -0.128 7.128 24 C -0.181 4.181 25 C -0.113 4.113 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.230 0.770 36 H 0.068 0.932 37 H 0.163 0.837 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.733 14.315 1.562 14.419 hybrid contribution -1.005 -0.565 -0.377 1.213 sum -0.272 13.750 1.185 13.804 Atomic orbital electron populations 1.22475 0.94638 1.04906 1.01881 1.21994 0.94022 0.92000 0.84386 1.21823 1.01921 0.93357 1.02397 1.22457 1.01329 1.03572 0.96448 1.86691 1.70981 1.26949 1.43917 1.26046 0.77966 0.79347 0.89707 1.90566 1.33341 1.68797 1.42612 1.18695 0.97641 0.86025 0.87079 0.88087 1.42435 1.08007 0.99460 1.82344 1.19081 0.85199 0.90326 1.41004 0.90725 1.24725 0.97129 0.96267 1.01861 1.69644 1.26549 1.05616 1.55943 0.86274 0.83624 0.78081 0.78319 1.21053 1.21651 1.21040 1.20250 0.98496 0.93804 0.95971 1.20924 0.95614 0.98661 0.90404 1.21126 0.99947 0.96032 1.00842 1.17730 0.94497 0.95901 0.85302 1.91444 1.73062 1.93326 1.54995 1.20926 1.02714 1.00261 0.94173 1.21080 0.95567 0.96863 0.97785 0.92393 0.91817 0.89523 0.91776 0.91098 0.91804 0.89465 0.91912 0.92379 0.76956 0.93245 0.83721 0.85172 0.85553 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 8.37 37.16 0.31 -2.23 16 2 C 0.11 1.57 1.13 -90.62 -0.10 1.47 16 3 C -0.14 -1.45 8.85 37.16 0.33 -1.12 16 4 C -0.18 -2.59 8.37 37.15 0.31 -2.27 16 5 O -0.37 -5.93 8.54 -39.26 -0.34 -6.26 16 6 C 0.43 8.24 5.31 36.00 0.19 8.43 16 7 O -0.47 -10.50 10.55 -18.75 -0.20 -10.69 16 8 C 0.22 4.16 3.61 -70.23 -0.25 3.91 16 9 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 10 N -0.68 -15.69 4.47 -55.68 -0.25 -15.94 16 11 C -0.23 -5.91 7.31 -15.06 -0.11 -6.02 16 12 H 0.07 2.05 7.34 -52.49 -0.39 1.66 16 13 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 14 N -0.93 -26.63 13.06 55.49 0.72 -25.90 16 15 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 16 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 C -0.08 -1.47 4.91 -104.62 -0.51 -1.99 16 20 C -0.04 -0.67 8.72 -39.60 -0.35 -1.01 16 21 C -0.16 -2.60 10.03 -39.52 -0.40 -3.00 16 22 C 0.08 1.36 7.30 -39.42 -0.29 1.07 16 23 F -0.15 -2.35 17.27 2.25 0.04 -2.31 16 24 C -0.16 -2.46 10.03 -39.51 -0.40 -2.86 16 25 C -0.09 -1.53 9.13 -39.59 -0.36 -1.89 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.09 1.50 5.89 -51.93 -0.31 1.19 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 1.55 5.89 -51.93 -0.31 1.24 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.39 9.45 8.03 -40.82 -0.33 9.12 16 36 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.15 2.70 7.61 -52.49 -0.40 2.30 16 38 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 39 H 0.13 1.62 8.06 -52.48 -0.42 1.19 16 40 H 0.13 2.03 5.82 -52.49 -0.31 1.72 16 LS Contribution 333.47 15.07 5.03 5.03 Total: -1.00 -29.37 333.47 -7.13 -36.50 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.39 Total: 9.85 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.72 Total: -7.71 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.48 Total: -41.85 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.53 Total: -16.95 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.37 -7.13 -36.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932461077.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.546 kcal (2) G-P(sol) polarization free energy of solvation -29.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds