Wall clock time and date at job start Tue Mar 31 2020 08:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46949 * 2 1 4 4 C 1.52992 * 109.47360 * 240.00091 * 2 1 3 5 5 O 1.45198 * 109.47195 * 119.99642 * 2 1 3 6 6 C 1.34230 * 116.99822 * 60.00026 * 5 2 1 7 7 O 1.20822 * 119.99798 * 0.02562 * 6 5 2 8 8 C 1.50695 * 119.99760 * 179.97438 * 6 5 2 9 9 H 1.09001 * 109.47565 * 320.00584 * 8 6 5 10 10 N 1.46505 * 109.47248 * 199.99988 * 8 6 5 11 11 C 1.36930 * 120.00222 * 294.36218 * 10 8 6 12 12 H 1.08001 * 120.00293 * 2.60050 * 11 10 8 13 13 C 1.38809 * 120.00499 * 182.60227 * 11 10 8 14 14 N 1.31626 * 119.99457 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00522 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.46980 * 60.00054 * 15 13 11 17 17 H 1.48495 * 109.47241 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47105 * 300.00355 * 15 13 11 19 19 C 1.50707 * 109.47441 * 80.00392 * 8 6 5 20 20 C 1.38238 * 119.97785 * 157.00411 * 19 8 6 21 21 C 1.38193 * 120.02649 * 180.02562 * 20 19 8 22 22 C 1.38458 * 119.97452 * 359.97438 * 21 20 19 23 23 F 1.35100 * 120.02701 * 179.97438 * 22 21 20 24 24 C 1.38460 * 119.94778 * 0.25606 * 22 21 20 25 25 C 1.38201 * 119.97416 * 359.51324 * 24 22 21 26 26 H 1.09004 * 109.47270 * 300.00230 * 1 2 3 27 27 H 1.09001 * 109.47161 * 60.00406 * 1 2 3 28 28 H 1.09000 * 109.47263 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47396 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47343 * 299.99599 * 3 2 1 31 31 H 1.09004 * 109.47322 * 59.99802 * 3 2 1 32 32 H 1.09006 * 109.47003 * 299.99785 * 4 2 1 33 33 H 1.09001 * 109.47389 * 59.99642 * 4 2 1 34 34 H 1.09000 * 109.47337 * 180.02562 * 4 2 1 35 35 H 0.97001 * 119.99562 * 114.35563 * 10 8 6 36 36 H 0.97005 * 119.99760 * 179.97438 * 14 13 11 37 37 H 1.08002 * 119.98726 * 359.97438 * 20 19 8 38 38 H 1.08007 * 120.01508 * 180.02562 * 21 20 19 39 39 H 1.08007 * 120.01285 * 179.74225 * 24 22 21 40 40 H 1.07999 * 119.98721 * 180.25086 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9683 1.3379 7 8 0.9567 -2.5027 0.5079 8 6 2.1183 -2.7435 2.5437 9 1 3.1540 -2.4854 2.7644 10 7 2.0207 -4.1792 2.2686 11 6 0.7944 -4.7581 2.0782 12 1 -0.0976 -4.1494 2.0890 13 6 0.6978 -6.1273 1.8713 14 7 1.7850 -6.8691 1.8577 15 14 -0.9751 -6.9170 1.6122 16 1 -1.6208 -6.3265 0.4123 17 1 -0.8069 -8.3791 1.4141 18 1 -1.8274 -6.6732 2.8035 19 6 1.2516 -2.3989 3.7274 20 6 1.1479 -3.2801 4.7875 21 6 0.3531 -2.9653 5.8732 22 6 -0.3393 -1.7666 5.8993 23 9 -1.1171 -1.4580 6.9599 24 6 -0.2385 -0.8869 4.8348 25 6 0.5607 -1.2017 3.7522 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2489 35 1 2.8248 -4.7197 2.2213 36 1 1.7175 -7.8260 1.7135 37 1 1.6878 -4.2153 4.7668 38 1 0.2726 -3.6538 6.7015 39 1 -0.7815 0.0466 4.8522 40 1 0.6427 -0.5138 2.9236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932461077.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:08 Heat of formation + Delta-G solvation = -106.578494 kcal Electronic energy + Delta-G solvation = -24739.296544 eV Core-core repulsion = 21047.602636 eV Total energy + Delta-G solvation = -3691.693908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.84717 -41.85082 -39.99146 -38.02204 -36.30679 -34.95424 -33.65621 -32.05886 -31.00607 -28.34523 -28.21132 -28.04338 -25.51994 -23.93350 -23.41181 -21.84072 -20.40652 -19.56428 -18.68486 -17.91824 -17.58304 -17.23742 -16.74646 -16.66928 -16.52183 -16.09173 -15.62110 -15.24605 -15.16562 -14.92767 -14.50178 -14.30997 -14.26215 -13.94839 -13.27808 -13.24738 -13.11807 -12.97225 -12.85654 -12.79981 -12.75094 -12.59864 -12.37291 -12.13008 -12.01235 -11.94469 -11.78147 -11.22258 -11.20136 -10.71707 -9.97258 -9.53178 -9.14962 -7.96150 -5.25087 0.19025 0.37445 1.41917 1.44995 1.50010 1.51581 1.86095 2.53512 2.70106 3.32386 3.40208 3.68150 3.79520 3.86201 3.88187 3.97878 4.01154 4.04315 4.15883 4.34135 4.49657 4.57176 4.63171 4.65346 4.80023 4.86812 4.94426 5.00194 5.03993 5.08164 5.18011 5.20949 5.32034 5.37279 5.40689 5.56094 5.66717 5.75633 5.99308 6.21829 7.15841 7.33110 7.87389 8.17181 9.25469 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.009655 B = 0.007842 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.308610 B = 3569.500505 C = 5625.577671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.103 3.897 3 C -0.131 4.131 4 C -0.179 4.179 5 O -0.358 6.358 6 C 0.442 3.558 7 O -0.506 6.506 8 C 0.216 3.784 9 H 0.128 0.872 10 N -0.696 5.696 11 C -0.199 4.199 12 H 0.061 0.939 13 C -0.061 4.061 14 N -0.961 5.961 15 Si 0.952 3.048 16 H -0.292 1.292 17 H -0.291 1.291 18 H -0.278 1.278 19 C -0.096 4.096 20 C -0.052 4.052 21 C -0.160 4.160 22 C 0.082 3.918 23 F -0.146 7.146 24 C -0.152 4.152 25 C -0.094 4.094 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.388 0.612 36 H 0.251 0.749 37 H 0.128 0.872 38 H 0.146 0.854 39 H 0.157 0.843 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 17.566 2.130 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.067 3.933 3 C -0.188 4.188 4 C -0.236 4.236 5 O -0.276 6.276 6 C 0.281 3.719 7 O -0.391 6.391 8 C 0.103 3.897 9 H 0.146 0.854 10 N -0.334 5.334 11 C -0.331 4.331 12 H 0.079 0.921 13 C -0.253 4.253 14 N -0.611 5.611 15 Si 0.782 3.218 16 H -0.219 1.219 17 H -0.217 1.217 18 H -0.204 1.204 19 C -0.098 4.098 20 C -0.071 4.071 21 C -0.179 4.179 22 C 0.063 3.937 23 F -0.124 7.124 24 C -0.171 4.171 25 C -0.113 4.113 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.081 0.919 35 H 0.222 0.778 36 H 0.060 0.940 37 H 0.146 0.854 38 H 0.164 0.836 39 H 0.174 0.826 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.239 17.358 1.862 17.459 hybrid contribution -0.846 -1.251 -0.458 1.578 sum -0.607 16.107 1.404 16.180 Atomic orbital electron populations 1.22440 0.94577 1.02913 1.03695 1.22411 0.94291 0.93672 0.82969 1.21835 1.02323 0.90463 1.04160 1.22424 1.01595 1.01603 0.97973 1.86635 1.70469 1.25277 1.45223 1.25543 0.77272 0.80235 0.88839 1.90584 1.34969 1.69858 1.43731 1.18963 0.99732 0.83955 0.87097 0.85429 1.42373 1.06575 1.01435 1.82982 1.19023 0.85905 0.89975 1.38183 0.92113 1.25258 0.99325 0.97030 1.03684 1.69744 1.27623 1.05224 1.58556 0.85539 0.81115 0.77233 0.77879 1.21901 1.21735 1.20414 1.20151 0.99346 0.94862 0.95456 1.20819 0.96600 0.98335 0.91328 1.21274 0.99252 0.96609 1.00768 1.17815 0.94391 0.95896 0.85639 1.91458 1.72893 1.93251 1.54847 1.21207 1.01774 1.01034 0.93047 1.21145 0.95405 0.96281 0.98459 0.91275 0.89352 0.93307 0.91209 0.88597 0.90798 0.93412 0.89331 0.91899 0.77781 0.93971 0.85362 0.83584 0.82558 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.63 8.37 71.98 0.60 -4.02 16 2 C 0.10 2.62 1.13 -10.80 -0.01 2.61 16 3 C -0.13 -2.22 8.85 71.98 0.64 -1.58 16 4 C -0.18 -4.86 8.37 71.98 0.60 -4.25 16 5 O -0.36 -10.96 8.54 -51.42 -0.44 -11.40 16 6 C 0.44 16.71 5.31 71.23 0.38 17.09 16 7 O -0.51 -22.96 10.55 21.98 0.23 -22.73 16 8 C 0.22 8.09 3.61 43.50 0.16 8.24 16 9 H 0.13 4.00 8.14 -2.39 -0.02 3.98 16 10 N -0.70 -32.62 4.47 -330.08 -1.48 -34.09 16 11 C -0.20 -10.67 7.31 84.03 0.61 -10.06 16 12 H 0.06 3.40 7.34 -2.91 -0.02 3.38 16 13 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 14 N -0.96 -56.63 13.06 21.65 0.28 -56.35 16 15 Si 0.95 47.14 29.55 68.60 2.03 49.16 16 16 H -0.29 -14.64 7.11 99.48 0.71 -13.94 16 17 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 18 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 19 C -0.10 -3.35 4.91 -19.86 -0.10 -3.45 16 20 C -0.05 -1.85 8.72 22.26 0.19 -1.65 16 21 C -0.16 -5.00 10.03 22.31 0.22 -4.78 16 22 C 0.08 2.43 7.30 22.38 0.16 2.59 16 23 F -0.15 -4.21 17.27 44.97 0.78 -3.43 16 24 C -0.15 -4.19 10.03 22.31 0.22 -3.97 16 25 C -0.09 -2.88 9.13 22.26 0.20 -2.68 16 26 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.66 5.89 -2.39 -0.01 1.65 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.05 1.70 5.89 -2.38 -0.01 1.69 16 33 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.39 19.15 8.03 -92.71 -0.74 18.41 16 36 H 0.25 14.58 8.31 -92.70 -0.77 13.80 16 37 H 0.13 4.92 7.61 -2.91 -0.02 4.90 16 38 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 39 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 40 H 0.14 3.98 5.82 -2.91 -0.02 3.96 16 Total: -1.00 -64.60 333.47 6.08 -58.53 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.31 Total: 29.16 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 4.36 Total: -8.85 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -1.19 Total: -90.44 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.21 Total: -34.13 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.78 Total: -3.43 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.16 kcal Total: -64.60 6.08 -58.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932461077.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.053 kcal (2) G-P(sol) polarization free energy of solvation -64.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds