Wall clock time and date at job start Tue Mar 31 2020 08:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47067 * 2 1 4 4 H 1.08998 * 109.46957 * 303.98234 * 3 2 1 5 5 C 1.50700 * 109.47311 * 183.98360 * 3 2 1 6 6 H 1.08001 * 120.00206 * 245.36090 * 5 3 2 7 7 C 1.37877 * 120.00158 * 65.36027 * 5 3 2 8 8 N 1.31509 * 120.00195 * 195.93126 * 7 5 3 9 9 Si 1.86807 * 119.99660 * 15.93289 * 7 5 3 10 10 H 1.48507 * 109.46809 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.46992 * 299.99871 * 9 7 5 12 12 H 1.48499 * 109.47383 * 60.00189 * 9 7 5 13 13 N 1.46504 * 109.47197 * 63.98174 * 3 2 1 14 14 C 1.34775 * 119.99794 * 275.00474 * 13 3 2 15 15 O 1.21275 * 120.00368 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99504 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.46980 * 273.87103 * 16 14 13 18 18 O 1.42893 * 109.47422 * 33.87145 * 16 14 13 19 19 C 1.50700 * 109.47125 * 153.87479 * 16 14 13 20 20 C 1.38242 * 119.97672 * 67.84166 * 19 16 14 21 21 C 1.38201 * 120.03036 * 179.72749 * 20 19 16 22 22 C 1.38461 * 119.96934 * 0.56996 * 21 20 19 23 23 F 1.35103 * 120.02757 * 179.67960 * 22 21 20 24 24 C 1.38461 * 119.94819 * 359.70947 * 22 21 20 25 25 C 1.38192 * 119.97665 * 359.97438 * 24 22 21 26 26 H 1.08994 * 109.47324 * 299.99619 * 1 2 3 27 27 H 1.09003 * 109.47155 * 60.00182 * 1 2 3 28 28 H 1.09004 * 109.46915 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47799 * 240.00289 * 2 1 3 30 30 H 1.08995 * 109.47384 * 119.99528 * 2 1 3 31 31 H 0.97000 * 119.99869 * 354.92140 * 8 7 5 32 32 H 0.97002 * 119.99777 * 95.00179 * 13 3 2 33 33 H 1.09004 * 109.47063 * 60.00004 * 17 16 14 34 34 H 1.08997 * 109.47102 * 180.02562 * 17 16 14 35 35 H 1.09003 * 109.47373 * 300.00076 * 17 16 14 36 36 H 0.96700 * 114.00266 * 59.99963 * 18 16 14 37 37 H 1.08011 * 119.98476 * 359.97438 * 20 19 16 38 38 H 1.07994 * 120.01769 * 180.25237 * 21 20 19 39 39 H 1.07995 * 120.01275 * 180.02562 * 24 22 21 40 40 H 1.07997 * 119.99251 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6195 1.9765 -0.8521 5 6 3.5437 1.4438 -0.0987 6 1 4.1386 1.8143 0.7230 7 6 4.1602 0.9718 -1.2381 8 7 5.4417 0.6770 -1.2183 9 14 3.1751 0.7510 -2.8098 10 1 4.0633 0.2352 -3.8824 11 1 2.0730 -0.2154 -2.5716 12 1 2.6060 2.0582 -3.2252 13 7 1.6315 2.1049 1.2413 14 6 0.4125 2.6723 1.3326 15 8 -0.3462 2.6350 0.3872 16 6 -0.0074 3.3542 2.6093 17 6 -0.6052 2.3210 3.5665 18 8 1.1308 3.9661 3.2192 19 6 -1.0390 4.4083 2.3000 20 6 -2.2940 4.0370 1.8547 21 6 -3.2427 5.0025 1.5761 22 6 -2.9320 6.3428 1.7318 23 9 -3.8565 7.2879 1.4536 24 6 -1.6728 6.7138 2.1724 25 6 -0.7279 5.7462 2.4566 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 5.9694 0.8606 -0.4254 32 1 2.2385 2.1351 1.9973 33 1 0.1410 1.5586 3.7902 34 1 -0.9093 2.8143 4.4897 35 1 -1.4735 1.8543 3.1013 36 1 1.5614 4.6335 2.6676 37 1 -2.5344 2.9916 1.7283 38 1 -4.2243 4.7120 1.2321 39 1 -1.4295 7.7588 2.2946 40 1 0.2541 6.0353 2.8006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935401816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:16 Heat of formation + Delta-G solvation = -112.075085 kcal Electronic energy + Delta-G solvation = -24413.674549 eV Core-core repulsion = 20721.742291 eV Total energy + Delta-G solvation = -3691.932258 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.99456 -40.55050 -38.60255 -36.74283 -35.34341 -32.44864 -32.28119 -31.38934 -31.09673 -29.17560 -27.27618 -24.50227 -23.07400 -22.58145 -22.01874 -20.24158 -19.57680 -18.57430 -17.95930 -17.25908 -16.61843 -16.30223 -15.67706 -15.60426 -15.00938 -14.73509 -14.40281 -13.78095 -13.71273 -13.48067 -13.20939 -13.04930 -12.77448 -12.57573 -12.46207 -12.35576 -12.33731 -12.06361 -11.76805 -11.69064 -11.11545 -11.00997 -10.80722 -10.71963 -10.47574 -9.93942 -9.60703 -9.25077 -9.13385 -9.02181 -8.63481 -8.39081 -8.16270 -6.61807 -4.26509 0.98744 1.15484 3.00510 3.33548 3.37220 3.40753 3.55294 3.84120 4.02352 4.15298 4.37466 4.45938 4.60424 4.76593 5.00551 5.12376 5.15187 5.19278 5.32796 5.57223 5.64936 5.77276 5.84977 5.95112 6.00620 6.02114 6.03506 6.14203 6.20923 6.37019 6.61568 6.72683 6.75853 6.88866 6.97364 7.22370 7.31699 7.39733 7.60086 8.19240 8.39118 8.64129 8.87646 9.42939 10.78861 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021146 B = 0.004290 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.819726 B = 6524.492084 C = 6691.226656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.246 3.754 4 H 0.041 0.959 5 C -0.617 4.617 6 H 0.062 0.938 7 C 0.040 3.960 8 N -0.898 5.898 9 Si 1.040 2.960 10 H -0.283 1.283 11 H -0.268 1.268 12 H -0.281 1.281 13 N -0.688 5.688 14 C 0.479 3.521 15 O -0.538 6.538 16 C 0.159 3.841 17 C -0.133 4.133 18 O -0.545 6.545 19 C -0.108 4.108 20 C -0.048 4.048 21 C -0.156 4.156 22 C 0.096 3.904 23 F -0.143 7.143 24 C -0.156 4.156 25 C -0.080 4.080 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.269 0.731 32 H 0.398 0.602 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.383 0.617 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.948 7.290 9.234 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.180 4.180 3 C 0.143 3.857 4 H 0.059 0.941 5 C -0.655 4.655 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.531 5.531 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.207 1.207 13 N -0.336 5.336 14 C 0.262 3.738 15 O -0.417 6.417 16 C 0.114 3.886 17 C -0.190 4.190 18 O -0.352 6.352 19 C -0.109 4.109 20 C -0.066 4.066 21 C -0.175 4.175 22 C 0.077 3.923 23 F -0.122 7.122 24 C -0.175 4.175 25 C -0.098 4.098 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.232 0.768 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.232 0.768 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.519 6.329 7.448 17.502 hybrid contribution 0.271 1.184 1.426 1.874 sum -14.247 7.513 8.874 18.390 Atomic orbital electron populations 1.21882 0.97438 0.98912 1.01805 1.22381 0.93782 0.99780 1.02016 1.19089 0.95571 0.88446 0.82603 0.94137 1.22094 0.89550 1.49015 1.04858 0.91985 1.25662 0.97178 0.92432 1.01426 1.70871 1.07847 1.40835 1.33528 0.84133 0.75541 0.77677 0.75911 1.20892 1.19457 1.20679 1.46251 1.14708 1.54441 1.18195 1.20869 0.83382 0.80429 0.89132 1.90686 1.52371 1.60164 1.38481 1.20247 0.85014 0.91343 0.91953 1.21753 1.01268 0.97312 0.98676 1.86557 1.43485 1.58670 1.46459 1.20122 0.95470 0.94178 1.01179 1.20820 0.91524 0.99897 0.94370 1.21120 1.01362 0.91059 1.03957 1.17753 0.87178 0.85959 1.01400 1.91486 1.65160 1.64067 1.91458 1.21028 0.92422 1.00786 1.03292 1.20776 0.99520 0.91519 0.98034 0.93489 0.92944 0.95023 0.91191 0.92984 0.92056 0.76763 0.90744 0.90726 0.90363 0.76800 0.84605 0.84699 0.84741 0.84720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.49 37.16 0.32 -2.43 16 2 C -0.14 -3.04 5.29 -26.73 -0.14 -3.18 16 3 C 0.25 5.65 1.83 -69.08 -0.13 5.52 16 4 H 0.04 1.02 6.28 -51.93 -0.33 0.69 16 5 C -0.62 -16.24 9.02 -34.44 -0.31 -16.55 16 6 H 0.06 1.71 7.96 -52.49 -0.42 1.29 16 7 C 0.04 1.10 5.33 -17.82 -0.10 1.00 16 8 N -0.90 -26.34 13.70 55.43 0.76 -25.58 16 9 Si 1.04 24.65 26.28 -169.99 -4.47 20.19 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -5.92 5.59 56.52 0.32 -5.61 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.69 -13.13 4.92 -54.93 -0.27 -13.40 16 14 C 0.48 8.34 5.20 -10.99 -0.06 8.29 16 15 O -0.54 -10.80 12.35 5.56 0.07 -10.73 16 16 C 0.16 2.14 1.16 -92.92 -0.11 2.03 16 17 C -0.13 -1.54 8.54 37.16 0.32 -1.23 16 18 O -0.55 -6.73 11.49 -35.23 -0.40 -7.13 16 19 C -0.11 -1.41 4.57 -104.62 -0.48 -1.89 16 20 C -0.05 -0.61 8.01 -39.59 -0.32 -0.93 16 21 C -0.16 -1.87 10.03 -39.51 -0.40 -2.26 16 22 C 0.10 1.18 7.30 -39.42 -0.29 0.89 16 23 F -0.14 -1.78 17.27 2.25 0.04 -1.75 16 24 C -0.16 -1.76 10.03 -39.52 -0.40 -2.16 16 25 C -0.08 -0.93 9.24 -39.59 -0.37 -1.29 16 26 H 0.05 0.86 5.67 -51.93 -0.29 0.57 16 27 H 0.05 1.06 7.79 -51.93 -0.40 0.65 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.59 4.64 -51.93 -0.24 1.35 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.27 7.82 8.73 -40.82 -0.36 7.46 16 32 H 0.40 7.11 7.93 -40.82 -0.32 6.78 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.85 6.99 -51.93 -0.36 0.49 16 36 H 0.38 3.94 7.72 45.56 0.35 4.29 16 37 H 0.14 1.67 6.95 -52.48 -0.36 1.31 16 38 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.14 1.26 6.42 -52.49 -0.34 0.92 16 LS Contribution 325.61 15.07 4.91 4.91 Total: -1.00 -30.34 325.61 -6.31 -36.65 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -4.49 Total: 11.04 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -2.45 Total: -14.19 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.49 Total: -38.98 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.34 Total: -17.86 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -4.47 Total: 20.19 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.34 -6.31 -36.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935401816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.428 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds