Wall clock time and date at job start Tue Mar 31 2020 08:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47067 * 2 1 4 4 H 1.08998 * 109.46957 * 303.98234 * 3 2 1 5 5 C 1.50700 * 109.47311 * 183.98360 * 3 2 1 6 6 H 1.08001 * 120.00206 * 245.36090 * 5 3 2 7 7 C 1.37877 * 120.00158 * 65.36027 * 5 3 2 8 8 N 1.31509 * 120.00195 * 195.93126 * 7 5 3 9 9 Si 1.86807 * 119.99660 * 15.93289 * 7 5 3 10 10 H 1.48507 * 109.46809 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.46992 * 299.99871 * 9 7 5 12 12 H 1.48499 * 109.47383 * 60.00189 * 9 7 5 13 13 N 1.46504 * 109.47197 * 63.98174 * 3 2 1 14 14 C 1.34775 * 119.99794 * 275.00474 * 13 3 2 15 15 O 1.21275 * 120.00368 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99504 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.46980 * 273.87103 * 16 14 13 18 18 O 1.42893 * 109.47422 * 33.87145 * 16 14 13 19 19 C 1.50700 * 109.47125 * 153.87479 * 16 14 13 20 20 C 1.38242 * 119.97672 * 67.84166 * 19 16 14 21 21 C 1.38201 * 120.03036 * 179.72749 * 20 19 16 22 22 C 1.38461 * 119.96934 * 0.56996 * 21 20 19 23 23 F 1.35103 * 120.02757 * 179.67960 * 22 21 20 24 24 C 1.38461 * 119.94819 * 359.70947 * 22 21 20 25 25 C 1.38192 * 119.97665 * 359.97438 * 24 22 21 26 26 H 1.08994 * 109.47324 * 299.99619 * 1 2 3 27 27 H 1.09003 * 109.47155 * 60.00182 * 1 2 3 28 28 H 1.09004 * 109.46915 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47799 * 240.00289 * 2 1 3 30 30 H 1.08995 * 109.47384 * 119.99528 * 2 1 3 31 31 H 0.97000 * 119.99869 * 354.92140 * 8 7 5 32 32 H 0.97002 * 119.99777 * 95.00179 * 13 3 2 33 33 H 1.09004 * 109.47063 * 60.00004 * 17 16 14 34 34 H 1.08997 * 109.47102 * 180.02562 * 17 16 14 35 35 H 1.09003 * 109.47373 * 300.00076 * 17 16 14 36 36 H 0.96700 * 114.00266 * 59.99963 * 18 16 14 37 37 H 1.08011 * 119.98476 * 359.97438 * 20 19 16 38 38 H 1.07994 * 120.01769 * 180.25237 * 21 20 19 39 39 H 1.07995 * 120.01275 * 180.02562 * 24 22 21 40 40 H 1.07997 * 119.99251 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6195 1.9765 -0.8521 5 6 3.5437 1.4438 -0.0987 6 1 4.1386 1.8143 0.7230 7 6 4.1602 0.9718 -1.2381 8 7 5.4417 0.6770 -1.2183 9 14 3.1751 0.7510 -2.8098 10 1 4.0633 0.2352 -3.8824 11 1 2.0730 -0.2154 -2.5716 12 1 2.6060 2.0582 -3.2252 13 7 1.6315 2.1049 1.2413 14 6 0.4125 2.6723 1.3326 15 8 -0.3462 2.6350 0.3872 16 6 -0.0074 3.3542 2.6093 17 6 -0.6052 2.3210 3.5665 18 8 1.1308 3.9661 3.2192 19 6 -1.0390 4.4083 2.3000 20 6 -2.2940 4.0370 1.8547 21 6 -3.2427 5.0025 1.5761 22 6 -2.9320 6.3428 1.7318 23 9 -3.8565 7.2879 1.4536 24 6 -1.6728 6.7138 2.1724 25 6 -0.7279 5.7462 2.4566 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 5.9694 0.8606 -0.4254 32 1 2.2385 2.1351 1.9973 33 1 0.1410 1.5586 3.7902 34 1 -0.9093 2.8143 4.4897 35 1 -1.4735 1.8543 3.1013 36 1 1.5614 4.6335 2.6676 37 1 -2.5344 2.9916 1.7283 38 1 -4.2243 4.7120 1.2321 39 1 -1.4295 7.7588 2.2946 40 1 0.2541 6.0353 2.8006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935401816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:16 Heat of formation + Delta-G solvation = -133.048427 kcal Electronic energy + Delta-G solvation = -24414.584021 eV Core-core repulsion = 20721.742291 eV Total energy + Delta-G solvation = -3692.841730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.93334 -41.73717 -39.80219 -37.83366 -37.01935 -34.43800 -33.29773 -32.97627 -31.99612 -30.16623 -29.05806 -25.64244 -24.32940 -23.96268 -23.29483 -21.68183 -21.08751 -20.05157 -19.22495 -18.56501 -17.76356 -17.39698 -17.10094 -16.61919 -16.43189 -15.95319 -15.56980 -15.19990 -14.96675 -14.66407 -14.50862 -14.45896 -14.15820 -14.08186 -13.87596 -13.53022 -13.33298 -13.29688 -13.15191 -12.80451 -12.69893 -12.45381 -12.29611 -11.99820 -11.82636 -11.76938 -11.37845 -11.07550 -10.51025 -10.45752 -10.06395 -9.80880 -9.61775 -8.78860 -6.44432 0.04169 0.26405 1.44012 1.49145 1.63655 1.67729 2.25147 2.40883 2.68350 3.01170 3.04046 3.23571 3.45776 3.71088 3.82045 3.92785 4.05781 4.30230 4.32870 4.41698 4.44259 4.55416 4.67104 4.75044 4.85444 4.90583 4.94887 5.07636 5.11432 5.12794 5.21866 5.23092 5.30915 5.45001 5.55327 5.64373 5.68922 5.86151 6.01049 6.38181 6.53400 6.85274 7.28134 7.40240 8.60332 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021146 B = 0.004290 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.819726 B = 6524.492084 C = 6691.226656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.139 4.139 3 C 0.252 3.748 4 H 0.022 0.978 5 C -0.612 4.612 6 H 0.039 0.961 7 C -0.004 4.004 8 N -0.930 5.930 9 Si 1.070 2.930 10 H -0.285 1.285 11 H -0.242 1.242 12 H -0.275 1.275 13 N -0.692 5.692 14 C 0.480 3.520 15 O -0.562 6.562 16 C 0.173 3.827 17 C -0.134 4.134 18 O -0.544 6.544 19 C -0.123 4.123 20 C -0.058 4.058 21 C -0.160 4.160 22 C 0.084 3.916 23 F -0.146 7.146 24 C -0.156 4.156 25 C -0.083 4.083 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.258 0.742 32 H 0.404 0.596 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.392 0.608 37 H 0.137 0.863 38 H 0.150 0.850 39 H 0.156 0.844 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.723 7.722 9.940 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.177 4.177 3 C 0.147 3.853 4 H 0.040 0.960 5 C -0.650 4.650 6 H 0.057 0.943 7 C -0.205 4.205 8 N -0.565 5.565 9 Si 0.892 3.108 10 H -0.210 1.210 11 H -0.167 1.167 12 H -0.201 1.201 13 N -0.340 5.340 14 C 0.265 3.735 15 O -0.442 6.442 16 C 0.128 3.872 17 C -0.191 4.191 18 O -0.352 6.352 19 C -0.124 4.124 20 C -0.076 4.076 21 C -0.179 4.179 22 C 0.065 3.935 23 F -0.125 7.125 24 C -0.175 4.175 25 C -0.101 4.101 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.239 0.761 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.242 0.758 37 H 0.155 0.845 38 H 0.168 0.832 39 H 0.174 0.826 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.310 6.778 8.191 19.469 hybrid contribution 0.824 1.140 1.275 1.899 sum -15.486 7.918 9.466 19.802 Atomic orbital electron populations 1.21768 0.95271 1.00448 1.01541 1.22274 0.95643 0.98313 1.01507 1.18756 0.93089 0.89628 0.83810 0.95992 1.22296 0.91568 1.47377 1.03738 0.94255 1.26769 0.97253 0.92251 1.04228 1.70973 1.08921 1.43394 1.33228 0.83753 0.75345 0.78580 0.73077 1.21041 1.16650 1.20088 1.46084 1.15817 1.55025 1.17110 1.21582 0.82130 0.79489 0.90288 1.90672 1.52848 1.60820 1.39873 1.20073 0.85361 0.91698 0.90041 1.21817 1.01345 0.96932 0.98988 1.86563 1.43310 1.58911 1.46405 1.20188 0.95434 0.94631 1.02168 1.20912 0.91789 1.00184 0.94756 1.21306 1.02006 0.90940 1.03629 1.17971 0.87625 0.86101 1.01819 1.91478 1.65341 1.64149 1.91540 1.21303 0.91876 1.01958 1.02315 1.21041 1.00515 0.90969 0.97532 0.92922 0.94029 0.92565 0.92378 0.92831 0.93277 0.76107 0.90951 0.88989 0.89726 0.75768 0.84534 0.83187 0.82591 0.82662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 8.49 71.98 0.61 -4.20 16 2 C -0.14 -5.80 5.29 30.59 0.16 -5.63 16 3 C 0.25 11.41 1.83 44.25 0.08 11.49 16 4 H 0.02 1.10 6.28 -2.39 -0.01 1.09 16 5 C -0.61 -32.49 9.02 25.60 0.23 -32.26 16 6 H 0.04 2.22 7.96 -2.91 -0.02 2.20 16 7 C 0.00 -0.24 5.33 84.66 0.45 0.21 16 8 N -0.93 -55.64 13.70 21.45 0.29 -55.35 16 9 Si 1.07 49.45 26.28 68.60 1.80 51.25 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.24 -10.10 5.59 99.48 0.56 -9.54 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 13 N -0.69 -25.76 4.92 -446.09 -2.20 -27.96 16 14 C 0.48 16.02 5.20 87.66 0.46 16.47 16 15 O -0.56 -21.79 12.35 -3.01 -0.04 -21.83 16 16 C 0.17 4.29 1.16 -12.28 -0.01 4.28 16 17 C -0.13 -2.79 8.54 71.98 0.62 -2.18 16 18 O -0.54 -12.23 11.49 -148.98 -1.71 -13.94 16 19 C -0.12 -2.94 4.57 -19.86 -0.09 -3.03 16 20 C -0.06 -1.39 8.01 22.26 0.18 -1.21 16 21 C -0.16 -3.55 10.03 22.31 0.22 -3.33 16 22 C 0.08 1.90 7.30 22.38 0.16 2.06 16 23 F -0.15 -3.41 17.27 44.97 0.78 -2.63 16 24 C -0.16 -3.14 10.03 22.31 0.22 -2.92 16 25 C -0.08 -1.71 9.24 22.26 0.21 -1.50 16 26 H 0.05 1.82 5.67 -2.39 -0.01 1.81 16 27 H 0.04 1.58 7.79 -2.39 -0.02 1.57 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 2.55 4.64 -2.39 -0.01 2.54 16 30 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.26 15.47 8.73 -92.71 -0.81 14.66 16 32 H 0.40 14.11 7.93 -92.71 -0.74 13.37 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.65 6.99 -2.39 -0.02 1.63 16 36 H 0.39 7.21 7.72 -74.06 -0.57 6.64 16 37 H 0.14 3.15 6.95 -2.91 -0.02 3.13 16 38 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.16 2.44 6.42 -2.91 -0.02 2.43 16 Total: -1.00 -64.74 325.61 2.02 -62.72 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.41 Total: 29.48 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 3.50 Total: -21.74 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -1.90 Total: -83.31 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.75 Total: -35.77 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 1.80 Total: 51.25 kcal Total: -64.74 2.02 -62.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935401816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.325 kcal (2) G-P(sol) polarization free energy of solvation -64.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds