Wall clock time and date at job start Tue Mar 31 2020 08:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47327 * 2 1 4 4 H 1.09004 * 109.47122 * 304.99691 * 3 2 1 5 5 C 1.50705 * 109.47547 * 185.00022 * 3 2 1 6 6 H 1.07996 * 119.99743 * 239.99816 * 5 3 2 7 7 C 1.37876 * 119.99910 * 59.99562 * 5 3 2 8 8 N 1.31520 * 119.99726 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00022 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47020 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47234 * 120.00039 * 9 7 5 12 12 H 1.48500 * 109.47062 * 239.99913 * 9 7 5 13 13 N 1.46502 * 109.47232 * 64.99581 * 3 2 1 14 14 C 1.34771 * 120.00297 * 275.00130 * 13 3 2 15 15 O 1.21285 * 120.00052 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00303 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.46829 * 85.10544 * 16 14 13 18 18 O 1.42897 * 109.47203 * 325.10785 * 16 14 13 19 19 C 1.50693 * 109.47457 * 205.10598 * 16 14 13 20 20 C 1.38251 * 119.97120 * 292.09784 * 19 16 14 21 21 C 1.38205 * 120.02377 * 179.72512 * 20 19 16 22 22 C 1.38471 * 119.97080 * 0.52907 * 21 20 19 23 23 F 1.35093 * 120.02259 * 179.72748 * 22 21 20 24 24 C 1.38454 * 119.94688 * 359.74719 * 22 21 20 25 25 C 1.38192 * 119.97928 * 0.02562 * 24 22 21 26 26 H 1.08999 * 109.47301 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47299 * 60.00154 * 1 2 3 28 28 H 1.09001 * 109.47131 * 299.99979 * 1 2 3 29 29 H 1.09000 * 109.47299 * 119.99846 * 2 1 3 30 30 H 1.08998 * 109.47481 * 239.99656 * 2 1 3 31 31 H 0.97000 * 119.99705 * 180.02562 * 8 7 5 32 32 H 0.96998 * 119.99498 * 95.00322 * 13 3 2 33 33 H 1.08995 * 109.47386 * 60.00328 * 17 16 14 34 34 H 1.09001 * 109.47150 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.46855 * 299.99900 * 17 16 14 36 36 H 0.96702 * 113.99869 * 299.99545 * 18 16 14 37 37 H 1.07995 * 119.99282 * 359.97438 * 20 19 16 38 38 H 1.08000 * 120.01662 * 180.29900 * 21 20 19 39 39 H 1.08001 * 120.01064 * 179.97438 * 24 22 21 40 40 H 1.07998 * 119.98790 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4061 0.3374 -2.1732 9 14 6.0049 0.8800 -1.3811 10 1 6.5987 1.5454 -0.1937 11 1 6.4962 -0.5190 -1.4626 12 1 6.3999 1.6156 -2.6092 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6645 1.3669 15 8 -0.3396 2.6320 0.4343 16 6 0.0362 3.3378 2.6547 17 6 0.5441 4.7811 2.6541 18 8 0.6077 2.6322 3.7581 19 6 -1.4656 3.3338 2.7795 20 6 -2.2323 4.0945 1.9166 21 6 -3.6100 4.0872 2.0264 22 6 -4.2216 3.3261 3.0082 23 9 -5.5679 3.3225 3.1200 24 6 -3.4523 2.5691 3.8754 25 6 -2.0752 2.5743 3.7607 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.8292 -0.0611 -2.9498 32 1 2.2719 2.1232 1.9977 33 1 0.1081 5.3194 1.8126 34 1 0.2559 5.2680 3.5858 35 1 1.6303 4.7839 2.5639 36 1 0.3291 1.7083 3.8209 37 1 -1.7549 4.6916 1.1538 38 1 -4.2091 4.6778 1.3491 39 1 -3.9283 1.9754 4.6418 40 1 -1.4750 1.9835 4.4368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935401817.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:19 Heat of formation + Delta-G solvation = -112.880284 kcal Electronic energy + Delta-G solvation = -24367.015518 eV Core-core repulsion = 20675.048344 eV Total energy + Delta-G solvation = -3691.967174 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.94198 -40.42811 -38.44971 -36.62740 -35.13924 -32.36924 -32.20093 -31.03391 -30.90715 -29.02956 -27.06413 -24.43748 -23.13942 -22.98424 -21.87551 -20.06608 -19.37835 -18.38412 -17.74909 -16.91166 -16.34086 -15.86561 -15.61807 -15.33495 -14.92617 -14.71172 -14.49307 -13.74860 -13.69059 -13.52108 -13.12295 -12.99739 -12.73835 -12.40193 -12.34245 -12.11316 -11.93278 -11.69923 -11.47051 -11.29121 -11.04849 -10.99097 -10.89767 -10.71203 -10.33037 -10.23150 -9.68162 -9.16051 -9.08780 -8.93344 -8.57067 -8.51227 -7.88607 -6.16083 -4.25550 1.05754 1.21892 3.17185 3.21491 3.29689 3.32213 3.46110 3.95697 4.11106 4.21594 4.33361 4.55446 4.67300 4.82582 5.09681 5.15469 5.25669 5.32223 5.41024 5.67667 5.75726 5.84145 5.92436 6.06070 6.07864 6.21981 6.33459 6.38751 6.44711 6.59872 6.82382 6.97092 7.12028 7.29343 7.36740 7.39027 7.58710 7.69549 7.85340 8.13235 8.60110 8.72627 9.04011 9.41954 10.89178 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.027779 B = 0.003917 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.719877 B = 7147.397380 C = 7527.392802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.695 5.695 14 C 0.479 3.521 15 O -0.537 6.537 16 C 0.157 3.843 17 C -0.133 4.133 18 O -0.545 6.545 19 C -0.106 4.106 20 C -0.048 4.048 21 C -0.156 4.156 22 C 0.095 3.905 23 F -0.144 7.144 24 C -0.157 4.157 25 C -0.082 4.082 26 H 0.022 0.978 27 H 0.049 0.951 28 H 0.036 0.964 29 H 0.031 0.969 30 H 0.099 0.901 31 H 0.264 0.736 32 H 0.394 0.606 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.381 0.619 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.468 5.570 11.627 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.343 5.343 14 C 0.261 3.739 15 O -0.415 6.415 16 C 0.113 3.887 17 C -0.190 4.190 18 O -0.352 6.352 19 C -0.107 4.107 20 C -0.066 4.066 21 C -0.174 4.174 22 C 0.076 3.924 23 F -0.122 7.122 24 C -0.176 4.176 25 C -0.100 4.100 26 H 0.041 0.959 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.227 0.773 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.229 0.771 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.742 6.008 10.857 15.776 hybrid contribution 0.717 -0.702 0.078 1.006 sum -9.026 5.305 10.934 15.138 Atomic orbital electron populations 1.21828 0.98346 0.98040 1.01113 1.21939 0.92530 0.99808 1.02368 1.18829 0.94308 0.89170 0.80916 0.93316 1.21269 0.90666 1.38997 1.06304 0.91973 1.24885 0.98637 0.94770 0.95364 1.69904 1.35065 1.37637 1.09350 0.86404 0.84836 0.77801 0.78141 1.19693 1.20867 1.20890 1.46491 1.14368 1.54792 1.18631 1.20765 0.83427 0.80323 0.89362 1.90700 1.51383 1.59216 1.40195 1.20291 0.88600 0.94629 0.85206 1.21747 1.02735 0.91298 1.03226 1.86557 1.72024 1.28143 1.48429 1.20132 0.95179 0.98539 0.96814 1.20838 0.92237 0.96872 0.96643 1.21126 0.95605 1.01581 0.99117 1.17745 0.76786 0.99836 0.98072 1.91478 1.29745 1.95394 1.95626 1.21009 0.94118 1.01621 1.00828 1.20759 0.93615 0.98037 0.97590 0.95853 0.93157 0.94500 0.95001 0.88237 0.92605 0.77292 0.90360 0.90918 0.90634 0.77061 0.84579 0.84730 0.84836 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.15 0.32 -2.62 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.51 2.24 -69.08 -0.15 6.36 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.53 -13.72 8.73 -34.44 -0.30 -14.02 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.22 11.29 55.43 0.63 -23.60 16 9 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.69 -13.62 4.93 -54.93 -0.27 -13.89 16 14 C 0.48 8.71 5.25 -10.99 -0.06 8.65 16 15 O -0.54 -11.43 12.36 5.55 0.07 -11.36 16 16 C 0.16 2.19 1.16 -92.93 -0.11 2.08 16 17 C -0.13 -1.64 8.54 37.16 0.32 -1.33 16 18 O -0.55 -6.75 11.50 -35.23 -0.41 -7.16 16 19 C -0.11 -1.42 4.56 -104.62 -0.48 -1.90 16 20 C -0.05 -0.64 8.01 -39.59 -0.32 -0.96 16 21 C -0.16 -1.95 10.03 -39.51 -0.40 -2.34 16 22 C 0.09 1.20 7.30 -39.42 -0.29 0.91 16 23 F -0.14 -1.84 17.27 2.25 0.04 -1.80 16 24 C -0.16 -1.81 10.03 -39.52 -0.40 -2.21 16 25 C -0.08 -0.96 9.24 -39.60 -0.37 -1.33 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 28 H 0.04 0.76 5.64 -51.93 -0.29 0.47 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.39 7.02 7.97 -40.82 -0.33 6.69 16 33 H 0.08 0.93 6.99 -51.93 -0.36 0.57 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.38 3.84 7.74 45.56 0.35 4.19 16 37 H 0.14 1.80 6.97 -52.49 -0.37 1.43 16 38 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 40 H 0.13 1.26 6.43 -52.49 -0.34 0.92 16 LS Contribution 330.41 15.07 4.98 4.98 Total: -1.00 -29.31 330.41 -6.97 -36.28 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -4.52 Total: 11.51 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -2.47 Total: -10.20 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.36 Total: -37.48 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.34 Total: -18.52 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.31 -6.97 -36.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935401817.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.597 kcal (2) G-P(sol) polarization free energy of solvation -29.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds