Wall clock time and date at job start Tue Mar 31 2020 08:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47327 * 2 1 4 4 H 1.09004 * 109.47122 * 304.99691 * 3 2 1 5 5 C 1.50705 * 109.47547 * 185.00022 * 3 2 1 6 6 H 1.07996 * 119.99743 * 239.99816 * 5 3 2 7 7 C 1.37876 * 119.99910 * 59.99562 * 5 3 2 8 8 N 1.31520 * 119.99726 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00022 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47020 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47234 * 120.00039 * 9 7 5 12 12 H 1.48500 * 109.47062 * 239.99913 * 9 7 5 13 13 N 1.46502 * 109.47232 * 64.99581 * 3 2 1 14 14 C 1.34771 * 120.00297 * 275.00130 * 13 3 2 15 15 O 1.21285 * 120.00052 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00303 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.46829 * 85.10544 * 16 14 13 18 18 O 1.42897 * 109.47203 * 325.10785 * 16 14 13 19 19 C 1.50693 * 109.47457 * 205.10598 * 16 14 13 20 20 C 1.38251 * 119.97120 * 292.09784 * 19 16 14 21 21 C 1.38205 * 120.02377 * 179.72512 * 20 19 16 22 22 C 1.38471 * 119.97080 * 0.52907 * 21 20 19 23 23 F 1.35093 * 120.02259 * 179.72748 * 22 21 20 24 24 C 1.38454 * 119.94688 * 359.74719 * 22 21 20 25 25 C 1.38192 * 119.97928 * 0.02562 * 24 22 21 26 26 H 1.08999 * 109.47301 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47299 * 60.00154 * 1 2 3 28 28 H 1.09001 * 109.47131 * 299.99979 * 1 2 3 29 29 H 1.09000 * 109.47299 * 119.99846 * 2 1 3 30 30 H 1.08998 * 109.47481 * 239.99656 * 2 1 3 31 31 H 0.97000 * 119.99705 * 180.02562 * 8 7 5 32 32 H 0.96998 * 119.99498 * 95.00322 * 13 3 2 33 33 H 1.08995 * 109.47386 * 60.00328 * 17 16 14 34 34 H 1.09001 * 109.47150 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.46855 * 299.99900 * 17 16 14 36 36 H 0.96702 * 113.99869 * 299.99545 * 18 16 14 37 37 H 1.07995 * 119.99282 * 359.97438 * 20 19 16 38 38 H 1.08000 * 120.01662 * 180.29900 * 21 20 19 39 39 H 1.08001 * 120.01064 * 179.97438 * 24 22 21 40 40 H 1.07998 * 119.98790 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4061 0.3374 -2.1732 9 14 6.0049 0.8800 -1.3811 10 1 6.5987 1.5454 -0.1937 11 1 6.4962 -0.5190 -1.4626 12 1 6.3999 1.6156 -2.6092 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6645 1.3669 15 8 -0.3396 2.6320 0.4343 16 6 0.0362 3.3378 2.6547 17 6 0.5441 4.7811 2.6541 18 8 0.6077 2.6322 3.7581 19 6 -1.4656 3.3338 2.7795 20 6 -2.2323 4.0945 1.9166 21 6 -3.6100 4.0872 2.0264 22 6 -4.2216 3.3261 3.0082 23 9 -5.5679 3.3225 3.1200 24 6 -3.4523 2.5691 3.8754 25 6 -2.0752 2.5743 3.7607 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.8292 -0.0611 -2.9498 32 1 2.2719 2.1232 1.9977 33 1 0.1081 5.3194 1.8126 34 1 0.2559 5.2680 3.5858 35 1 1.6303 4.7839 2.5639 36 1 0.3291 1.7083 3.8209 37 1 -1.7549 4.6916 1.1538 38 1 -4.2091 4.6778 1.3491 39 1 -3.9283 1.9754 4.6418 40 1 -1.4750 1.9835 4.4368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935401817.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:18 Heat of formation + Delta-G solvation = -132.066689 kcal Electronic energy + Delta-G solvation = -24367.847503 eV Core-core repulsion = 20675.048344 eV Total energy + Delta-G solvation = -3692.799159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.91708 -41.65777 -39.71151 -37.75898 -36.89790 -34.23433 -33.27378 -32.64999 -31.97187 -30.06644 -28.92896 -25.75217 -24.81387 -23.94459 -23.17010 -21.59913 -20.95200 -19.64149 -18.92009 -18.18878 -17.58315 -17.28691 -16.97156 -16.59635 -16.33489 -16.32029 -15.60190 -15.20134 -14.89604 -14.63186 -14.57845 -14.09943 -14.09270 -13.66626 -13.52974 -13.31916 -13.25625 -13.21764 -13.04980 -12.86553 -12.73264 -12.69672 -12.13827 -12.05491 -11.97515 -11.77944 -11.57445 -11.03096 -10.56658 -10.36329 -10.03551 -9.63386 -9.56943 -8.15742 -6.32639 0.07080 0.28720 1.43971 1.46048 1.57159 1.73558 2.28658 2.45794 2.76464 3.08402 3.14018 3.25799 3.49597 3.74737 3.92790 3.95089 4.09892 4.32911 4.46759 4.49434 4.57178 4.69921 4.74434 4.80073 4.93585 4.96685 5.06213 5.10651 5.14047 5.24806 5.26401 5.43737 5.48386 5.56942 5.63372 5.80180 5.88398 5.92240 6.18099 6.47085 6.75952 7.00346 7.34188 7.55651 8.89363 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.027779 B = 0.003917 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.719877 B = 7147.397380 C = 7527.392802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.001 1.001 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.693 5.693 14 C 0.477 3.523 15 O -0.569 6.569 16 C 0.175 3.825 17 C -0.134 4.134 18 O -0.540 6.540 19 C -0.120 4.120 20 C -0.062 4.062 21 C -0.162 4.162 22 C 0.083 3.917 23 F -0.147 7.147 24 C -0.154 4.154 25 C -0.080 4.080 26 H 0.043 0.957 27 H 0.023 0.977 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.264 0.736 32 H 0.404 0.596 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.392 0.608 37 H 0.130 0.870 38 H 0.147 0.853 39 H 0.159 0.841 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.205 5.485 13.910 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.017 0.983 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.342 5.342 14 C 0.262 3.738 15 O -0.450 6.450 16 C 0.130 3.870 17 C -0.192 4.192 18 O -0.348 6.348 19 C -0.121 4.121 20 C -0.080 4.080 21 C -0.181 4.181 22 C 0.064 3.936 23 F -0.125 7.125 24 C -0.172 4.172 25 C -0.098 4.098 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.240 0.760 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.243 0.757 37 H 0.148 0.852 38 H 0.165 0.835 39 H 0.177 0.823 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.483 5.930 13.182 17.288 hybrid contribution 0.562 -0.662 -0.633 1.075 sum -8.921 5.267 12.550 16.273 Atomic orbital electron populations 1.21657 0.96898 0.99038 1.00246 1.21777 0.93713 0.99142 1.01326 1.18375 0.93510 0.89191 0.81395 0.98299 1.21610 0.91579 1.38728 1.06548 0.91216 1.25723 1.03065 0.94437 0.95077 1.70052 1.36886 1.38456 1.09877 0.85372 0.79466 0.77792 0.78165 1.18506 1.20522 1.21102 1.46242 1.15429 1.55114 1.17448 1.21598 0.82235 0.79290 0.90700 1.90689 1.52175 1.60095 1.41996 1.20013 0.89222 0.94793 0.82957 1.21801 1.02469 0.90484 1.04404 1.86563 1.71975 1.29110 1.47120 1.20183 0.94660 0.99517 0.97779 1.20884 0.92752 0.97442 0.96903 1.21281 0.95465 1.01827 0.99498 1.17955 0.76835 1.00276 0.98514 1.91472 1.29948 1.95443 1.95660 1.21318 0.94046 1.01062 1.00797 1.21055 0.93991 0.97447 0.97289 0.93799 0.95734 0.93563 0.93914 0.91196 0.92670 0.76027 0.90425 0.88785 0.90960 0.75697 0.85243 0.83532 0.82312 0.82176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.51 71.98 0.61 -4.63 16 2 C -0.12 -5.73 5.45 30.59 0.17 -5.57 16 3 C 0.28 13.75 2.24 44.25 0.10 13.84 16 4 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 5 C -0.55 -28.21 8.73 25.60 0.22 -27.99 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 0.90 5.29 84.65 0.45 1.35 16 8 N -0.91 -51.41 11.29 21.45 0.24 -51.17 16 9 Si 0.97 41.45 29.54 68.60 2.03 43.47 16 10 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 13 N -0.69 -26.97 4.93 -446.09 -2.20 -29.17 16 14 C 0.48 17.17 5.25 87.66 0.46 17.63 16 15 O -0.57 -24.67 12.36 -3.05 -0.04 -24.71 16 16 C 0.17 4.58 1.16 -12.29 -0.01 4.57 16 17 C -0.13 -3.12 8.54 71.98 0.62 -2.51 16 18 O -0.54 -11.81 11.50 -148.98 -1.71 -13.53 16 19 C -0.12 -3.03 4.56 -19.86 -0.09 -3.12 16 20 C -0.06 -1.62 8.01 22.26 0.18 -1.44 16 21 C -0.16 -3.92 10.03 22.32 0.22 -3.69 16 22 C 0.08 1.97 7.30 22.38 0.16 2.13 16 23 F -0.15 -3.54 17.27 44.97 0.78 -2.76 16 24 C -0.15 -3.12 10.03 22.31 0.22 -2.90 16 25 C -0.08 -1.65 9.24 22.26 0.21 -1.45 16 26 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.02 1.15 7.85 -2.39 -0.02 1.13 16 28 H 0.05 1.88 5.64 -2.39 -0.01 1.87 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 3.77 5.95 -2.39 -0.01 3.76 16 31 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.40 13.94 7.97 -92.71 -0.74 13.20 16 33 H 0.08 1.80 6.99 -2.39 -0.02 1.78 16 34 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.39 6.60 7.74 -74.06 -0.57 6.03 16 37 H 0.13 3.47 6.97 -2.91 -0.02 3.45 16 38 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 39 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 40 H 0.16 2.37 6.43 -2.91 -0.02 2.36 16 Total: -1.00 -63.94 330.41 2.38 -61.56 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -0.23 Total: 30.06 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 3.52 Total: -13.76 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -1.96 Total: -80.34 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -1.75 Total: -38.23 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Total: -63.94 2.38 -61.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935401817.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.509 kcal (2) G-P(sol) polarization free energy of solvation -63.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds