Wall clock time and date at job start Tue Mar 31 2020 07:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47415 * 2 1 4 4 C 1.53001 * 109.46676 * 240.00214 * 2 1 3 5 5 C 1.50697 * 109.47389 * 59.99955 * 4 2 1 6 6 H 1.08003 * 119.99866 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00198 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00168 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00122 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47545 * 59.99810 * 9 7 5 11 11 H 1.48506 * 109.47420 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46733 * 299.99626 * 9 7 5 13 13 C 1.52997 * 109.47348 * 120.00613 * 2 1 3 14 14 N 1.46502 * 109.46610 * 299.99680 * 13 2 1 15 15 C 1.34779 * 119.99674 * 180.02562 * 14 13 2 16 16 O 1.21585 * 120.00525 * 0.02562 * 15 14 13 17 17 C 1.47546 * 120.00197 * 179.97438 * 15 14 13 18 18 C 1.39754 * 120.17321 * 0.02562 * 17 15 14 19 19 C 1.37767 * 119.94307 * 179.97438 * 18 17 15 20 20 C 1.38556 * 120.32169 * 0.02562 * 19 18 17 21 21 C 1.38206 * 120.36571 * 359.73935 * 20 19 18 22 22 F 1.35092 * 119.98105 * 180.25265 * 21 20 19 23 23 C 1.38927 * 120.04195 * 0.51714 * 21 20 19 24 24 O 1.35699 * 120.15905 * 179.76249 * 23 21 20 25 25 H 1.09005 * 109.46683 * 299.99883 * 1 2 3 26 26 H 1.09004 * 109.47529 * 59.99487 * 1 2 3 27 27 H 1.09004 * 109.47556 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47405 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46817 * 300.00503 * 3 2 1 30 30 H 1.08998 * 109.46918 * 59.99703 * 3 2 1 31 31 H 1.09001 * 109.47095 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47100 * 299.99688 * 4 2 1 33 33 H 0.96996 * 119.99947 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.47162 * 179.97438 * 13 2 1 35 35 H 1.09000 * 109.47600 * 59.99593 * 13 2 1 36 36 H 0.96999 * 120.00740 * 359.97438 * 14 13 2 37 37 H 1.08000 * 120.02975 * 359.95301 * 18 17 15 38 38 H 1.08003 * 119.83774 * 180.02562 * 19 18 17 39 39 H 1.07999 * 119.81420 * 180.02562 * 20 19 18 40 40 H 0.96700 * 114.00288 * 269.72335 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5375 -0.0108 -2.4797 6 1 0.9163 0.8671 -2.3806 7 6 1.8709 -0.4815 -3.7320 8 7 2.6270 -1.5509 -3.8528 9 14 1.2488 0.3995 -5.2572 10 1 1.7438 1.7995 -5.2567 11 1 1.7446 -0.2999 -6.4698 12 1 -0.2363 0.3995 -5.2576 13 6 2.0400 -0.7214 1.2491 14 7 1.5517 -0.0307 2.4453 15 6 1.8778 -0.4910 3.6694 16 8 2.5775 -1.4790 3.7810 17 6 1.3865 0.2048 4.8742 18 6 0.5824 1.3411 4.7503 19 6 0.1259 1.9867 5.8785 20 6 0.4604 1.5155 7.1378 21 6 1.2508 0.3901 7.2754 22 9 1.5680 -0.0655 8.5070 23 6 1.7239 -0.2696 6.1480 24 8 2.5041 -1.3720 6.2805 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1299 -0.7217 -1.2491 32 1 1.6765 -1.7489 -1.2493 33 1 2.8619 -1.8818 -4.7338 34 1 3.1300 -0.7217 1.2489 35 1 1.6767 -1.7490 1.2491 36 1 0.9944 0.7581 2.3565 37 1 0.3194 1.7130 3.7711 38 1 -0.4958 2.8645 5.7808 39 1 0.0977 2.0278 8.0166 40 1 3.4513 -1.1813 6.3183 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935994096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:38 Heat of formation + Delta-G solvation = -112.339807 kcal Electronic energy + Delta-G solvation = -23430.279470 eV Core-core repulsion = 19738.335733 eV Total energy + Delta-G solvation = -3691.943737 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.20506 -40.53856 -38.73312 -37.14813 -36.90704 -33.72309 -32.26401 -31.15929 -30.03854 -27.18819 -26.56537 -26.41764 -24.28231 -23.00899 -22.61059 -20.54953 -19.16943 -18.43628 -17.74372 -17.02287 -16.43244 -16.35147 -16.16482 -15.53685 -15.32675 -15.10952 -14.53442 -14.50035 -13.93603 -13.75299 -13.63227 -13.14793 -12.88766 -12.73675 -12.49593 -12.17422 -12.08910 -12.06798 -11.20310 -11.07627 -11.03818 -10.89554 -10.66855 -10.45053 -10.30369 -9.92013 -9.85101 -9.38986 -9.21685 -9.02588 -8.97069 -8.77541 -8.38036 -6.02124 -4.03821 0.34016 0.66372 2.62523 3.15857 3.30172 3.35984 3.36893 3.41763 3.66298 4.04505 4.34127 4.42402 4.46155 4.62680 4.80174 5.21916 5.33198 5.38769 5.49530 5.57032 5.57368 5.66978 5.69683 5.82284 6.10536 6.16453 6.22597 6.26606 6.33764 6.48445 6.57950 6.69272 7.00790 7.02955 7.07714 7.38311 7.60284 7.63606 7.72961 7.96107 8.30100 8.38095 9.00720 9.59444 11.09290 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.036841 B = 0.002952 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.830502 B = 9483.322036 C =10044.210306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.128 3.872 14 N -0.715 5.715 15 C 0.549 3.451 16 O -0.522 6.522 17 C -0.132 4.132 18 C -0.082 4.082 19 C -0.107 4.107 20 C -0.119 4.119 21 C 0.062 3.938 22 F -0.130 7.130 23 C 0.134 3.866 24 O -0.466 6.466 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.397 0.603 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 9.094 20.488 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.074 4.074 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.006 3.994 14 N -0.367 5.367 15 C 0.335 3.665 16 O -0.399 6.399 17 C -0.136 4.136 18 C -0.101 4.101 19 C -0.125 4.125 20 C -0.138 4.138 21 C 0.042 3.958 22 F -0.109 7.109 23 C 0.086 3.914 24 O -0.276 6.276 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.233 0.767 37 H 0.156 0.844 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -4.251 7.913 20.438 22.325 hybrid contribution -0.090 0.938 -0.735 1.195 sum -4.340 8.851 19.703 22.031 Atomic orbital electron populations 1.21772 0.95227 1.01287 1.00195 1.20923 0.95518 0.95882 0.95047 1.21767 1.00627 0.95851 1.00201 1.19082 0.96373 0.95244 0.89380 1.21135 1.31320 1.12141 0.90517 0.92300 1.25011 0.95290 0.95063 0.99086 1.69951 1.36817 1.22981 1.23599 0.86709 0.79147 0.79756 0.82668 1.20327 1.21388 1.20313 1.21684 0.99050 0.96141 0.82552 1.46130 1.53046 1.31875 1.05654 1.17905 0.81263 0.84371 0.82971 1.90823 1.37259 1.25246 1.86537 1.20445 1.02315 0.97401 0.93401 1.21389 0.95367 0.93491 0.99893 1.20975 1.00098 1.00539 0.90914 1.21273 0.97801 0.95130 0.99626 1.18019 1.02198 0.95807 0.79733 1.91515 1.91386 1.88481 1.39511 1.18432 0.95733 0.87415 0.89775 1.84804 1.21348 1.26556 1.94920 0.95363 0.91326 0.93254 0.93278 0.91332 0.95364 0.96312 0.96299 0.92941 0.91553 0.91534 0.76669 0.84387 0.83978 0.83907 0.74406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 2 C -0.07 -1.34 0.54 -154.51 -0.08 -1.42 16 3 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.35 7.65 -34.44 -0.26 -13.61 16 6 H 0.06 1.46 5.68 -52.48 -0.30 1.16 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 9 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 13 C 0.13 2.20 4.56 -4.04 -0.02 2.18 16 14 N -0.71 -10.03 4.91 -61.35 -0.30 -10.33 16 15 C 0.55 8.26 7.76 -12.46 -0.10 8.16 16 16 O -0.52 -9.74 15.16 -16.60 -0.25 -9.99 16 17 C -0.13 -1.57 5.88 -104.85 -0.62 -2.19 16 18 C -0.08 -0.71 9.53 -39.19 -0.37 -1.08 16 19 C -0.11 -0.72 10.02 -39.64 -0.40 -1.12 16 20 C -0.12 -0.90 10.01 -39.48 -0.40 -1.30 16 21 C 0.06 0.65 7.30 -39.34 -0.29 0.36 16 22 F -0.13 -1.46 17.11 2.25 0.04 -1.42 16 23 C 0.13 1.63 6.72 -38.65 -0.26 1.37 16 24 O -0.47 -6.11 11.44 -40.69 -0.47 -6.58 16 25 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 26 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.23 6.62 -51.93 -0.34 0.89 16 30 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.40 4.55 4.19 -40.82 -0.17 4.37 16 37 H 0.14 0.92 6.40 -52.49 -0.34 0.58 16 38 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 39 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.40 3.66 9.06 45.56 0.41 4.08 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -32.42 333.92 -6.95 -39.37 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -4.31 Total: 3.53 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -2.40 Total: -10.09 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.44 Total: -35.74 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.72 Total: -16.56 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.42 -6.95 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935994096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.970 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds