Wall clock time and date at job start Tue Mar 31 2020 07:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47415 * 2 1 4 4 C 1.53001 * 109.46676 * 240.00214 * 2 1 3 5 5 C 1.50697 * 109.47389 * 59.99955 * 4 2 1 6 6 H 1.08003 * 119.99866 * 359.97438 * 5 4 2 7 7 C 1.37873 * 120.00198 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00168 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00122 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47545 * 59.99810 * 9 7 5 11 11 H 1.48506 * 109.47420 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46733 * 299.99626 * 9 7 5 13 13 C 1.52997 * 109.47348 * 120.00613 * 2 1 3 14 14 N 1.46502 * 109.46610 * 299.99680 * 13 2 1 15 15 C 1.34779 * 119.99674 * 180.02562 * 14 13 2 16 16 O 1.21585 * 120.00525 * 0.02562 * 15 14 13 17 17 C 1.47546 * 120.00197 * 179.97438 * 15 14 13 18 18 C 1.39754 * 120.17321 * 0.02562 * 17 15 14 19 19 C 1.37767 * 119.94307 * 179.97438 * 18 17 15 20 20 C 1.38556 * 120.32169 * 0.02562 * 19 18 17 21 21 C 1.38206 * 120.36571 * 359.73935 * 20 19 18 22 22 F 1.35092 * 119.98105 * 180.25265 * 21 20 19 23 23 C 1.38927 * 120.04195 * 0.51714 * 21 20 19 24 24 O 1.35699 * 120.15905 * 179.76249 * 23 21 20 25 25 H 1.09005 * 109.46683 * 299.99883 * 1 2 3 26 26 H 1.09004 * 109.47529 * 59.99487 * 1 2 3 27 27 H 1.09004 * 109.47556 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47405 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.46817 * 300.00503 * 3 2 1 30 30 H 1.08998 * 109.46918 * 59.99703 * 3 2 1 31 31 H 1.09001 * 109.47095 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.47100 * 299.99688 * 4 2 1 33 33 H 0.96996 * 119.99947 * 180.02562 * 8 7 5 34 34 H 1.08999 * 109.47162 * 179.97438 * 13 2 1 35 35 H 1.09000 * 109.47600 * 59.99593 * 13 2 1 36 36 H 0.96999 * 120.00740 * 359.97438 * 14 13 2 37 37 H 1.08000 * 120.02975 * 359.95301 * 18 17 15 38 38 H 1.08003 * 119.83774 * 180.02562 * 19 18 17 39 39 H 1.07999 * 119.81420 * 180.02562 * 20 19 18 40 40 H 0.96700 * 114.00288 * 269.72335 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5375 -0.0108 -2.4797 6 1 0.9163 0.8671 -2.3806 7 6 1.8709 -0.4815 -3.7320 8 7 2.6270 -1.5509 -3.8528 9 14 1.2488 0.3995 -5.2572 10 1 1.7438 1.7995 -5.2567 11 1 1.7446 -0.2999 -6.4698 12 1 -0.2363 0.3995 -5.2576 13 6 2.0400 -0.7214 1.2491 14 7 1.5517 -0.0307 2.4453 15 6 1.8778 -0.4910 3.6694 16 8 2.5775 -1.4790 3.7810 17 6 1.3865 0.2048 4.8742 18 6 0.5824 1.3411 4.7503 19 6 0.1259 1.9867 5.8785 20 6 0.4604 1.5155 7.1378 21 6 1.2508 0.3901 7.2754 22 9 1.5680 -0.0655 8.5070 23 6 1.7239 -0.2696 6.1480 24 8 2.5041 -1.3720 6.2805 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1299 -0.7217 -1.2491 32 1 1.6765 -1.7489 -1.2493 33 1 2.8619 -1.8818 -4.7338 34 1 3.1300 -0.7217 1.2489 35 1 1.6767 -1.7490 1.2491 36 1 0.9944 0.7581 2.3565 37 1 0.3194 1.7130 3.7711 38 1 -0.4958 2.8645 5.7808 39 1 0.0977 2.0278 8.0166 40 1 3.4513 -1.1813 6.3183 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935994096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:38 Heat of formation + Delta-G solvation = -133.777855 kcal Electronic energy + Delta-G solvation = -23431.209093 eV Core-core repulsion = 19738.335733 eV Total energy + Delta-G solvation = -3692.873360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.98594 -41.53300 -39.82731 -38.46544 -37.84719 -35.27554 -34.02893 -32.06096 -30.75714 -29.08999 -27.94190 -27.74346 -25.49816 -24.38931 -23.55610 -21.69651 -20.28691 -19.52432 -18.83486 -18.36166 -17.85318 -17.23433 -17.16726 -16.63961 -16.37134 -16.31288 -16.23803 -15.33053 -15.13899 -15.02960 -14.83420 -14.53906 -14.31144 -13.92294 -13.81010 -13.43689 -13.11414 -12.84342 -12.80655 -12.73847 -12.56368 -12.31048 -12.21295 -12.01485 -11.94207 -11.52488 -11.15867 -10.89777 -10.77892 -10.49405 -10.26834 -9.95267 -9.73548 -8.12642 -6.20694 -0.42440 -0.02411 1.44041 1.46060 1.53193 1.72961 2.04221 2.45984 2.54879 2.89728 3.21973 3.28372 3.56189 3.80441 3.92429 4.00458 4.08730 4.17078 4.24001 4.52348 4.68743 4.72268 4.74616 4.83219 4.93297 4.97670 5.07967 5.10616 5.14483 5.20268 5.36635 5.46050 5.52478 5.54965 5.58227 5.64035 5.81863 5.91222 6.31048 6.51481 6.60506 6.94746 7.17719 7.47319 8.99800 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.036841 B = 0.002952 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.830502 B = 9483.322036 C =10044.210306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.065 4.065 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.075 0.925 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.265 1.265 11 H -0.293 1.293 12 H -0.266 1.266 13 C 0.142 3.858 14 N -0.700 5.700 15 C 0.548 3.452 16 O -0.569 6.569 17 C -0.154 4.154 18 C -0.073 4.073 19 C -0.091 4.091 20 C -0.101 4.101 21 C 0.044 3.956 22 F -0.141 7.141 23 C 0.111 3.889 24 O -0.491 6.491 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.057 0.943 30 H 0.073 0.927 31 H -0.015 1.015 32 H -0.016 1.016 33 H 0.259 0.741 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.413 0.587 37 H 0.164 0.836 38 H 0.187 0.813 39 H 0.175 0.825 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.955 12.939 21.658 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.093 0.907 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.190 1.190 11 H -0.219 1.219 12 H -0.191 1.191 13 C 0.018 3.982 14 N -0.354 5.354 15 C 0.336 3.664 16 O -0.450 6.450 17 C -0.158 4.158 18 C -0.091 4.091 19 C -0.109 4.109 20 C -0.120 4.120 21 C 0.024 3.976 22 F -0.120 7.120 23 C 0.064 3.936 24 O -0.304 6.304 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.004 0.996 32 H 0.002 0.998 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.253 0.747 37 H 0.181 0.819 38 H 0.204 0.796 39 H 0.192 0.808 40 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -6.886 11.809 21.623 25.582 hybrid contribution 0.717 -0.243 -1.005 1.259 sum -6.169 11.566 20.618 24.432 Atomic orbital electron populations 1.21718 0.93440 1.00994 1.01884 1.20721 0.96830 0.96470 0.92511 1.21708 0.99972 0.94373 1.01897 1.18969 0.94271 0.94154 0.92401 1.21576 1.30429 1.12160 0.90978 0.90668 1.25962 0.95672 0.95848 1.02788 1.70121 1.38826 1.25053 1.24134 0.85595 0.78985 0.78785 0.78249 1.19001 1.21927 1.19073 1.21255 0.97957 0.95371 0.83659 1.45828 1.53070 1.32055 1.04405 1.18438 0.80258 0.83802 0.83876 1.90798 1.39431 1.27507 1.87215 1.20216 1.04859 0.99270 0.91480 1.21727 0.93665 0.91736 1.02003 1.21467 0.98997 1.00938 0.89492 1.21727 0.95479 0.93328 1.01482 1.18236 1.03493 0.97022 0.78837 1.91486 1.91692 1.88849 1.39940 1.18732 0.96387 0.87731 0.90794 1.84753 1.22381 1.28138 1.95126 0.90880 0.92299 0.94640 0.94444 0.92353 0.90818 0.99621 0.99777 0.93217 0.93317 0.93701 0.74723 0.81875 0.79580 0.80789 0.73435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 2 C -0.06 -2.35 0.54 -52.18 -0.03 -2.38 16 3 C -0.12 -3.82 8.05 71.98 0.58 -3.24 16 4 C 0.04 1.99 4.04 29.85 0.12 2.11 16 5 C -0.51 -26.96 7.65 25.60 0.20 -26.77 16 6 H 0.08 3.64 5.68 -2.91 -0.02 3.62 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 8 N -0.94 -56.98 13.29 21.45 0.28 -56.69 16 9 Si 0.96 42.90 29.54 68.60 2.03 44.92 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 C 0.14 4.96 4.56 86.38 0.39 5.36 16 14 N -0.70 -18.65 4.91 -466.26 -2.29 -20.94 16 15 C 0.55 16.37 7.76 86.70 0.67 17.04 16 16 O -0.57 -22.25 15.16 16.95 0.26 -21.99 16 17 C -0.15 -3.45 5.88 -20.02 -0.12 -3.56 16 18 C -0.07 -0.93 9.53 22.52 0.21 -0.71 16 19 C -0.09 -0.71 10.02 22.23 0.22 -0.49 16 20 C -0.10 -1.10 10.01 22.34 0.22 -0.88 16 21 C 0.04 0.84 7.30 22.43 0.16 1.00 16 22 F -0.14 -3.05 17.11 44.97 0.77 -2.28 16 23 C 0.11 2.65 6.72 22.88 0.15 2.81 16 24 O -0.49 -13.65 11.44 -69.26 -0.79 -14.45 16 25 H 0.07 1.65 6.86 -2.38 -0.02 1.64 16 26 H 0.06 2.00 6.62 -2.39 -0.02 1.98 16 27 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.96 6.62 -2.39 -0.02 1.94 16 30 H 0.07 1.62 6.86 -2.39 -0.02 1.61 16 31 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 32 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 33 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 34 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.41 7.89 4.19 -92.71 -0.39 7.50 16 37 H 0.16 1.19 6.40 -2.91 -0.02 1.17 16 38 H 0.19 -0.06 8.06 -2.91 -0.02 -0.08 16 39 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 40 H 0.41 8.39 9.06 -74.06 -0.67 7.72 16 Total: -1.00 -75.89 333.92 4.12 -71.77 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.03 Total: 12.59 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 3.84 Total: -12.92 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -2.00 Total: -77.64 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -0.54 Total: -36.44 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.77 Total: -2.28 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -75.89 4.12 -71.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935994096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.008 kcal (2) G-P(sol) polarization free energy of solvation -75.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds