Wall clock time and date at job start Tue Mar 31 2020 07:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47372 * 2 1 4 4 C 1.53003 * 109.47307 * 120.00540 * 2 1 3 5 5 H 1.08999 * 109.46781 * 304.14738 * 4 2 1 6 6 F 1.39899 * 109.46929 * 184.15161 * 4 2 1 7 7 C 1.50699 * 109.47006 * 64.14970 * 4 2 1 8 8 O 1.21278 * 120.00329 * 46.79920 * 7 4 2 9 9 N 1.34773 * 119.99736 * 226.79900 * 7 4 2 10 10 C 1.46499 * 119.99984 * 180.02562 * 9 7 4 11 11 C 1.50704 * 109.47037 * 179.97438 * 10 9 7 12 12 C 1.38316 * 119.96795 * 269.72178 * 11 10 9 13 13 C 1.38282 * 120.13816 * 179.76743 * 12 11 10 14 14 C 1.38119 * 120.07108 * 0.51577 * 13 12 11 15 15 C 1.38863 * 119.92681 * 359.74029 * 14 13 12 16 16 O 1.35753 * 120.06763 * 179.97438 * 15 14 13 17 17 C 1.34824 * 116.99792 * 355.53510 * 16 15 14 18 18 H 1.08005 * 120.00494 * 4.71729 * 17 16 15 19 19 C 1.38659 * 119.99578 * 184.71218 * 17 16 15 20 20 N 1.31550 * 120.00320 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99896 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46994 * 59.99879 * 21 19 17 23 23 H 1.48496 * 109.47132 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46986 * 300.00402 * 21 19 17 25 25 C 1.38080 * 119.96290 * 90.00699 * 11 10 9 26 26 H 1.08999 * 109.47294 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46609 * 299.99651 * 1 2 3 28 28 H 1.08997 * 109.47544 * 59.99188 * 1 2 3 29 29 H 1.09001 * 109.46609 * 240.00349 * 2 1 3 30 30 H 1.09002 * 109.47113 * 184.92057 * 3 2 1 31 31 H 1.08998 * 109.46848 * 304.92439 * 3 2 1 32 32 H 1.08998 * 109.46777 * 64.91726 * 3 2 1 33 33 H 0.97005 * 120.00243 * 359.97438 * 9 7 4 34 34 H 1.09003 * 109.47004 * 60.00076 * 10 9 7 35 35 H 1.09000 * 109.47221 * 300.00105 * 10 9 7 36 36 H 1.08003 * 119.93010 * 0.02562 * 12 11 10 37 37 H 1.08004 * 119.96601 * 180.25786 * 13 12 11 38 38 H 1.08000 * 120.03931 * 179.76890 * 14 13 12 39 39 H 0.96999 * 120.00251 * 179.97438 * 20 19 17 40 40 H 1.07998 * 120.03535 * 359.94885 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6173 -0.2523 2.1376 6 9 3.4358 -0.6392 1.2979 7 6 1.6234 -2.1688 1.1987 8 8 1.7809 -2.8100 0.1814 9 7 1.0759 -2.7506 2.2841 10 6 0.6714 -4.1577 2.2352 11 6 0.0932 -4.5607 3.5673 12 6 0.9175 -5.0773 4.5505 13 6 0.3915 -5.4437 5.7758 14 6 -0.9612 -5.3047 6.0177 15 6 -1.7923 -4.7914 5.0308 16 8 -3.1224 -4.6541 5.2653 17 6 -3.5877 -5.1200 6.4417 18 1 -2.9003 -5.5080 7.1789 19 6 -4.9489 -5.1011 6.7052 20 7 -5.7863 -4.6289 5.8072 21 14 -5.5938 -5.7460 8.3355 22 1 -5.0020 -4.9599 9.4477 23 1 -7.0727 -5.6163 8.3691 24 1 -5.2191 -7.1751 8.4855 25 6 -1.2600 -4.4194 3.8029 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 3.1265 1.4437 -0.0881 31 1 1.6065 1.9811 -0.8426 32 1 1.7504 1.9302 0.9308 33 1 0.9503 -2.2378 3.0979 34 1 1.5400 -4.7780 2.0140 35 1 -0.0795 -4.2932 1.4569 36 1 1.9750 -5.1908 4.3624 37 1 1.0385 -5.8429 6.5430 38 1 -1.3721 -5.5946 6.9735 39 1 -6.7385 -4.6160 5.9914 40 1 -1.9038 -4.0195 3.0335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116711374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:54 Heat of formation + Delta-G solvation = -104.587665 kcal Electronic energy + Delta-G solvation = -22949.462386 eV Core-core repulsion = 19257.854808 eV Total energy + Delta-G solvation = -3691.607579 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.06394 -39.86540 -39.06884 -36.91819 -35.73228 -34.65209 -32.38591 -31.05668 -29.29074 -28.17007 -27.30170 -25.77579 -24.99324 -21.80975 -21.47992 -20.88785 -20.30931 -18.30084 -17.58009 -17.13759 -16.66525 -16.27381 -15.42140 -15.31938 -14.97407 -14.71011 -14.57613 -14.37680 -14.02571 -13.68148 -13.51867 -13.17718 -13.03225 -12.73540 -12.53130 -12.47248 -12.41205 -12.20134 -11.72327 -11.44014 -11.39994 -11.33457 -10.98361 -10.89033 -10.87513 -10.76715 -10.53299 -9.90708 -9.46525 -9.15940 -8.93159 -8.30734 -7.38510 -6.53420 -4.13121 1.81673 2.21213 2.33691 3.02539 3.08024 3.10543 3.11820 3.88919 4.08487 4.30388 4.39384 4.51977 4.56169 4.83728 4.89396 5.01982 5.17547 5.20904 5.25719 5.38068 5.47341 5.55358 5.58223 5.66789 5.77728 5.78882 5.83270 5.96749 6.00118 6.02036 6.19098 6.29377 6.49277 6.75640 6.93828 7.11906 7.21577 7.29613 7.34786 7.65303 7.90382 7.98715 8.91792 9.59560 10.64143 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.002998 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.255005 B = 9337.413567 C =10090.189263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.147 4.147 4 C 0.086 3.914 5 H 0.100 0.900 6 F -0.191 7.191 7 C 0.492 3.508 8 O -0.526 6.526 9 N -0.711 5.711 10 C 0.166 3.834 11 C -0.075 4.075 12 C -0.195 4.195 13 C -0.075 4.075 14 C -0.225 4.225 15 C 0.150 3.850 16 O -0.175 6.175 17 C -0.395 4.395 18 H 0.092 0.908 19 C 0.041 3.959 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.171 4.171 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.406 0.594 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.272 0.728 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.442 7.988 -5.698 15.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.205 4.205 4 C 0.046 3.954 5 H 0.118 0.882 6 F -0.171 7.171 7 C 0.275 3.725 8 O -0.402 6.402 9 N -0.362 5.362 10 C 0.044 3.956 11 C -0.076 4.076 12 C -0.215 4.215 13 C -0.094 4.094 14 C -0.245 4.245 15 C 0.096 3.904 16 O -0.078 6.078 17 C -0.471 4.471 18 H 0.109 0.891 19 C -0.164 4.164 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.191 4.191 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.241 0.759 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.146 0.854 39 H 0.082 0.918 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.123 7.642 -6.596 15.776 hybrid contribution -0.317 -0.218 1.419 1.471 sum 11.805 7.424 -5.177 14.876 Atomic orbital electron populations 1.21829 0.93326 1.02829 1.02846 1.21600 0.97383 0.97016 0.97226 1.21821 1.01733 0.94435 1.02479 1.21718 0.77427 0.94065 1.02186 0.88237 1.92866 1.29452 1.96983 1.97829 1.20888 0.78472 0.89225 0.83868 1.90721 1.53856 1.64724 1.30906 1.46229 1.61979 1.13103 1.14907 1.20224 0.99513 0.80656 0.95252 1.19231 0.93018 1.00894 0.94416 1.20487 0.98518 1.07937 0.94516 1.20753 0.94539 0.97860 0.96198 1.21255 0.93809 1.08395 1.01008 1.19315 0.85451 0.92805 0.92801 1.83979 1.16640 1.69248 1.37967 1.21283 0.91924 1.42156 0.91723 0.89053 1.25296 0.94773 0.96780 0.99535 1.70019 1.03456 1.41993 1.34028 0.85778 0.78171 0.79379 0.80111 1.19450 1.20209 1.19447 1.20071 0.94160 1.08556 0.96293 0.92024 0.91963 0.91392 0.88778 0.91912 0.91692 0.92250 0.75947 0.90691 0.90550 0.87464 0.87221 0.85409 0.91845 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.00 37.16 0.33 -1.02 16 2 C -0.11 -1.07 2.61 -90.62 -0.24 -1.31 16 3 C -0.15 -1.12 8.96 37.16 0.33 -0.78 16 4 C 0.09 0.90 3.36 -27.88 -0.09 0.80 16 5 H 0.10 0.78 7.98 -51.93 -0.41 0.36 16 6 F -0.19 -2.31 16.48 2.25 0.04 -2.28 16 7 C 0.49 6.50 6.08 -10.99 -0.07 6.43 16 8 O -0.53 -8.76 16.48 5.56 0.09 -8.67 16 9 N -0.71 -8.88 5.55 -61.47 -0.34 -9.22 16 10 C 0.17 2.34 5.80 -5.19 -0.03 2.31 16 11 C -0.07 -1.22 5.25 -104.65 -0.55 -1.77 16 12 C -0.20 -3.10 9.70 -39.54 -0.38 -3.49 16 13 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 14 C -0.23 -4.59 9.17 -39.39 -0.36 -4.95 16 15 C 0.15 3.41 6.65 -39.11 -0.26 3.15 16 16 O -0.18 -4.79 9.76 0.06 0.00 -4.78 16 17 C -0.39 -10.63 9.49 30.89 0.29 -10.33 16 18 H 0.09 2.26 5.20 -52.48 -0.27 1.99 16 19 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 20 N -0.86 -24.53 13.67 55.48 0.76 -23.77 16 21 Si 0.94 19.85 29.55 -169.99 -5.02 14.83 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 25 C -0.17 -3.33 9.65 -39.39 -0.38 -3.71 16 26 H 0.06 0.66 7.35 -51.93 -0.38 0.28 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 1.03 7.79 -51.93 -0.40 0.62 16 30 H 0.06 0.49 7.86 -51.93 -0.41 0.09 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.41 4.38 8.34 -40.82 -0.34 4.04 16 34 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 36 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 38 H 0.13 2.61 5.63 -52.49 -0.30 2.32 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -30.97 345.42 -6.62 -37.58 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.45 Total: 6.45 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -1.89 Total: -15.34 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.42 Total: -32.99 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.97 -6.62 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116711374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.003 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds