Wall clock time and date at job start Tue Mar 31 2020 07:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47372 * 2 1 4 4 C 1.53003 * 109.47307 * 120.00540 * 2 1 3 5 5 H 1.08999 * 109.46781 * 304.14738 * 4 2 1 6 6 F 1.39899 * 109.46929 * 184.15161 * 4 2 1 7 7 C 1.50699 * 109.47006 * 64.14970 * 4 2 1 8 8 O 1.21278 * 120.00329 * 46.79920 * 7 4 2 9 9 N 1.34773 * 119.99736 * 226.79900 * 7 4 2 10 10 C 1.46499 * 119.99984 * 180.02562 * 9 7 4 11 11 C 1.50704 * 109.47037 * 179.97438 * 10 9 7 12 12 C 1.38316 * 119.96795 * 269.72178 * 11 10 9 13 13 C 1.38282 * 120.13816 * 179.76743 * 12 11 10 14 14 C 1.38119 * 120.07108 * 0.51577 * 13 12 11 15 15 C 1.38863 * 119.92681 * 359.74029 * 14 13 12 16 16 O 1.35753 * 120.06763 * 179.97438 * 15 14 13 17 17 C 1.34824 * 116.99792 * 355.53510 * 16 15 14 18 18 H 1.08005 * 120.00494 * 4.71729 * 17 16 15 19 19 C 1.38659 * 119.99578 * 184.71218 * 17 16 15 20 20 N 1.31550 * 120.00320 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99896 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.46994 * 59.99879 * 21 19 17 23 23 H 1.48496 * 109.47132 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46986 * 300.00402 * 21 19 17 25 25 C 1.38080 * 119.96290 * 90.00699 * 11 10 9 26 26 H 1.08999 * 109.47294 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46609 * 299.99651 * 1 2 3 28 28 H 1.08997 * 109.47544 * 59.99188 * 1 2 3 29 29 H 1.09001 * 109.46609 * 240.00349 * 2 1 3 30 30 H 1.09002 * 109.47113 * 184.92057 * 3 2 1 31 31 H 1.08998 * 109.46848 * 304.92439 * 3 2 1 32 32 H 1.08998 * 109.46777 * 64.91726 * 3 2 1 33 33 H 0.97005 * 120.00243 * 359.97438 * 9 7 4 34 34 H 1.09003 * 109.47004 * 60.00076 * 10 9 7 35 35 H 1.09000 * 109.47221 * 300.00105 * 10 9 7 36 36 H 1.08003 * 119.93010 * 0.02562 * 12 11 10 37 37 H 1.08004 * 119.96601 * 180.25786 * 13 12 11 38 38 H 1.08000 * 120.03931 * 179.76890 * 14 13 12 39 39 H 0.96999 * 120.00251 * 179.97438 * 20 19 17 40 40 H 1.07998 * 120.03535 * 359.94885 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6173 -0.2523 2.1376 6 9 3.4358 -0.6392 1.2979 7 6 1.6234 -2.1688 1.1987 8 8 1.7809 -2.8100 0.1814 9 7 1.0759 -2.7506 2.2841 10 6 0.6714 -4.1577 2.2352 11 6 0.0932 -4.5607 3.5673 12 6 0.9175 -5.0773 4.5505 13 6 0.3915 -5.4437 5.7758 14 6 -0.9612 -5.3047 6.0177 15 6 -1.7923 -4.7914 5.0308 16 8 -3.1224 -4.6541 5.2653 17 6 -3.5877 -5.1200 6.4417 18 1 -2.9003 -5.5080 7.1789 19 6 -4.9489 -5.1011 6.7052 20 7 -5.7863 -4.6289 5.8072 21 14 -5.5938 -5.7460 8.3355 22 1 -5.0020 -4.9599 9.4477 23 1 -7.0727 -5.6163 8.3691 24 1 -5.2191 -7.1751 8.4855 25 6 -1.2600 -4.4194 3.8029 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 3.1265 1.4437 -0.0881 31 1 1.6065 1.9811 -0.8426 32 1 1.7504 1.9302 0.9308 33 1 0.9503 -2.2378 3.0979 34 1 1.5400 -4.7780 2.0140 35 1 -0.0795 -4.2932 1.4569 36 1 1.9750 -5.1908 4.3624 37 1 1.0385 -5.8429 6.5430 38 1 -1.3721 -5.5946 6.9735 39 1 -6.7385 -4.6160 5.9914 40 1 -1.9038 -4.0195 3.0335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116711374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:54 Heat of formation + Delta-G solvation = -124.086979 kcal Electronic energy + Delta-G solvation = -22950.307940 eV Core-core repulsion = 19257.854808 eV Total energy + Delta-G solvation = -3692.453132 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.96719 -41.11158 -40.56499 -38.51066 -36.53453 -35.89325 -34.29248 -32.41670 -30.84545 -29.17447 -28.00063 -27.45416 -26.42669 -23.29363 -22.65286 -22.22962 -21.22010 -19.72632 -19.08116 -18.57889 -17.72273 -17.28642 -16.78612 -16.55341 -16.29199 -16.13476 -15.84231 -15.61277 -15.46593 -15.09279 -14.82628 -14.33750 -14.01605 -13.97146 -13.75277 -13.63178 -13.38497 -13.33086 -13.05138 -13.02314 -12.54232 -12.41229 -12.28634 -12.15320 -12.13305 -12.04998 -11.63693 -11.23294 -11.00063 -10.79721 -10.28533 -9.77461 -9.04600 -8.47148 -6.15679 0.35249 0.69292 1.28058 1.36167 1.45978 1.51910 1.97034 2.17533 2.82406 3.13587 3.28092 3.37329 3.48272 3.63093 3.79483 3.79779 4.07720 4.15670 4.28536 4.37545 4.46662 4.50573 4.51587 4.61620 4.71720 4.75406 4.86447 4.94765 4.99375 5.10901 5.12382 5.17221 5.24460 5.30960 5.34563 5.60627 5.68901 5.70389 6.01016 6.14404 6.31271 6.95375 6.97696 7.77227 8.75560 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.002998 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.255005 B = 9337.413567 C =10090.189263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.143 4.143 4 C 0.087 3.913 5 H 0.133 0.867 6 F -0.198 7.198 7 C 0.492 3.508 8 O -0.564 6.564 9 N -0.703 5.703 10 C 0.171 3.829 11 C -0.060 4.060 12 C -0.170 4.170 13 C -0.069 4.069 14 C -0.234 4.234 15 C 0.113 3.887 16 O -0.231 6.231 17 C -0.414 4.414 18 H 0.104 0.896 19 C -0.021 4.021 20 N -0.920 5.920 21 Si 1.016 2.984 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.179 4.179 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.416 0.584 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.121 0.879 39 H 0.272 0.728 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.047 8.304 -4.627 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.200 4.200 4 C 0.048 3.952 5 H 0.151 0.849 6 F -0.179 7.179 7 C 0.277 3.723 8 O -0.443 6.443 9 N -0.355 5.355 10 C 0.048 3.952 11 C -0.061 4.061 12 C -0.189 4.189 13 C -0.087 4.087 14 C -0.254 4.254 15 C 0.063 3.937 16 O -0.137 6.137 17 C -0.490 4.490 18 H 0.121 0.879 19 C -0.219 4.219 20 N -0.558 5.558 21 Si 0.836 3.164 22 H -0.180 1.180 23 H -0.198 1.198 24 H -0.183 1.183 25 C -0.199 4.199 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.253 0.747 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.139 0.861 39 H 0.081 0.919 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.794 7.969 -5.516 17.686 hybrid contribution -0.787 -0.319 0.921 1.253 sum 14.008 7.651 -4.594 16.609 Atomic orbital electron populations 1.21822 0.92982 1.01691 1.04129 1.21594 0.97590 0.97987 0.95936 1.21806 1.01466 0.93045 1.03729 1.21892 0.76990 0.92201 1.04165 0.84932 1.92851 1.30259 1.96862 1.97950 1.21395 0.77604 0.90205 0.83112 1.90706 1.55417 1.65878 1.32265 1.46117 1.61500 1.12505 1.15355 1.20109 0.99653 0.81860 0.93557 1.19393 0.91564 0.99590 0.95509 1.20995 1.00223 1.04370 0.93264 1.21156 0.93271 0.96678 0.97601 1.21390 0.95291 1.08419 1.00262 1.19847 0.84633 0.94561 0.94678 1.83945 1.19069 1.72006 1.38707 1.21783 0.92709 1.42290 0.92228 0.87913 1.26556 0.94758 0.96952 1.03633 1.70169 1.03735 1.45079 1.36807 0.84676 0.77431 0.79141 0.75188 1.18001 1.19840 1.18270 1.20212 0.95643 1.08771 0.95275 0.94281 0.90536 0.90354 0.90777 0.92302 0.90599 0.90898 0.74721 0.89476 0.91328 0.83576 0.83396 0.86117 0.91851 0.87188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.00 71.98 0.65 -1.83 16 2 C -0.11 -1.96 2.61 -10.79 -0.03 -1.98 16 3 C -0.14 -1.84 8.96 71.98 0.65 -1.20 16 4 C 0.09 1.63 3.36 29.85 0.10 1.73 16 5 H 0.13 1.63 7.98 -2.39 -0.02 1.61 16 6 F -0.20 -4.41 16.48 44.97 0.74 -3.67 16 7 C 0.49 12.24 6.08 87.66 0.53 12.77 16 8 O -0.56 -18.43 16.48 -3.02 -0.05 -18.48 16 9 N -0.70 -16.02 5.55 -466.79 -2.59 -18.61 16 10 C 0.17 4.47 5.80 85.63 0.50 4.97 16 11 C -0.06 -1.82 5.25 -19.88 -0.10 -1.92 16 12 C -0.17 -4.67 9.70 22.30 0.22 -4.45 16 13 C -0.07 -2.11 10.04 22.25 0.22 -1.88 16 14 C -0.23 -9.39 9.17 22.39 0.21 -9.18 16 15 C 0.11 5.28 6.65 22.58 0.15 5.43 16 16 O -0.23 -13.33 9.76 -22.71 -0.22 -13.55 16 17 C -0.41 -23.25 9.49 67.92 0.64 -22.60 16 18 H 0.10 5.23 5.20 -2.91 -0.02 5.22 16 19 C -0.02 -1.17 5.49 84.84 0.47 -0.71 16 20 N -0.92 -55.25 13.67 21.61 0.30 -54.95 16 21 Si 1.02 41.50 29.55 68.60 2.03 43.53 16 22 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 23 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 24 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 25 C -0.18 -7.04 9.65 22.39 0.22 -6.83 16 26 H 0.04 0.82 7.35 -2.39 -0.02 0.80 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.60 7.79 -2.39 -0.02 1.58 16 30 H 0.06 0.81 7.86 -2.39 -0.02 0.80 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.42 7.83 8.34 -92.70 -0.77 7.05 16 34 H 0.09 2.14 8.08 -2.39 -0.02 2.12 16 35 H 0.07 1.94 8.08 -2.39 -0.02 1.92 16 36 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 38 H 0.12 4.94 5.63 -2.91 -0.02 4.93 16 39 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 40 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -71.88 345.42 4.90 -66.98 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.28 Total: 26.43 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 4.41 Total: -27.69 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -2.29 Total: -73.55 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.27 Total: -32.03 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.74 Total: -3.67 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -71.88 4.90 -66.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116711374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.109 kcal (2) G-P(sol) polarization free energy of solvation -71.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds