Wall clock time and date at job start Tue Mar 31 2020 07:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47177 * 2 1 4 4 C 1.53004 * 109.47528 * 240.00551 * 2 1 3 5 5 F 1.39896 * 109.47300 * 59.99282 * 4 2 1 6 6 N 1.46495 * 109.47334 * 120.00130 * 2 1 3 7 7 C 1.34775 * 120.00172 * 300.00109 * 6 2 1 8 8 O 1.21287 * 119.99798 * 0.02562 * 7 6 2 9 9 C 1.50705 * 120.00246 * 179.97438 * 7 6 2 10 10 C 1.50695 * 109.46992 * 180.02562 * 9 7 6 11 11 C 1.38299 * 119.93247 * 90.00201 * 10 9 7 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47517 * 59.99414 * 19 17 15 21 21 H 1.48505 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46989 * 299.99567 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.08995 * 109.46961 * 299.99519 * 1 2 3 26 26 H 1.08995 * 109.47288 * 59.99656 * 1 2 3 27 27 H 1.09005 * 109.47091 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47457 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47293 * 300.00341 * 3 2 1 30 30 H 1.09004 * 109.46769 * 59.99756 * 3 2 1 31 31 H 1.08998 * 109.47672 * 180.02562 * 4 2 1 32 32 H 1.09005 * 109.46733 * 299.99973 * 4 2 1 33 33 H 0.97005 * 120.00223 * 120.00451 * 6 2 1 34 34 H 1.08998 * 109.46621 * 60.00483 * 9 7 6 35 35 H 1.08996 * 109.47266 * 300.00146 * 9 7 6 36 36 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 37 37 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 38 38 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 40 40 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 9 1.5737 -0.0617 -2.3915 6 7 2.0183 -0.6906 1.1961 7 6 1.6928 -0.2302 2.4202 8 8 0.9951 0.7556 2.5316 9 6 2.1947 -0.9410 3.6507 10 6 1.6919 -0.2309 4.8811 11 6 0.4831 -0.5977 5.4441 12 6 0.0198 0.0506 6.5720 13 6 0.7691 1.0725 7.1406 14 8 0.3166 1.7114 8.2496 15 6 -0.8087 1.2314 8.8163 16 1 -1.3524 0.4283 8.3413 17 6 -1.2680 1.7692 10.0090 18 7 -0.6056 2.7473 10.5879 19 14 -2.8267 1.1038 10.7945 20 1 -2.6520 -0.3399 11.0955 21 1 -3.1006 1.8419 12.0537 22 1 -3.9665 1.2799 9.8591 23 6 1.9795 1.4428 6.5694 24 6 2.4400 0.7867 5.4448 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1301 -0.7215 -1.2491 32 1 1.6767 -1.7488 -1.2494 33 1 2.5761 -1.4793 1.1071 34 1 3.2847 -0.9413 3.6508 35 1 1.8310 -1.9685 3.6505 36 1 -0.0988 -1.3927 5.0017 37 1 -0.9239 -0.2366 7.0113 38 1 -0.9271 3.1237 11.4221 39 1 2.5622 2.2400 7.0067 40 1 3.3833 1.0712 5.0026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119218798.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:08 Heat of formation + Delta-G solvation = -96.282092 kcal Electronic energy + Delta-G solvation = -23145.748926 eV Core-core repulsion = 19454.501504 eV Total energy + Delta-G solvation = -3691.247422 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.05850 -40.17916 -38.88190 -36.86141 -35.95003 -32.64086 -32.15012 -30.74533 -30.11126 -27.47600 -27.30149 -26.55711 -25.07656 -21.94843 -21.76842 -20.24217 -19.75551 -17.94761 -17.56626 -16.88694 -16.74233 -16.31959 -15.44062 -15.28709 -14.82432 -14.52359 -14.41427 -14.22028 -13.78650 -13.57748 -13.46051 -13.36031 -13.02487 -12.67877 -12.57826 -12.34124 -12.09191 -11.79796 -11.59000 -11.43491 -11.24514 -11.23270 -11.05499 -10.81135 -10.71947 -10.61541 -10.41263 -9.51498 -9.29988 -9.23535 -8.78792 -8.11588 -7.13062 -6.41678 -4.00300 2.27255 2.28957 2.74327 3.00693 3.15361 3.17160 3.19065 3.99654 4.04470 4.29839 4.52230 4.57034 4.73876 4.95656 5.05449 5.13859 5.15833 5.26167 5.29324 5.35171 5.56241 5.56542 5.67322 5.69849 5.70165 5.75858 5.87985 6.15854 6.18801 6.25098 6.38747 6.45246 6.73693 6.94885 7.08560 7.27036 7.40083 7.41969 7.48774 7.87536 8.03558 8.30970 9.03904 9.74823 10.76440 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.032331 B = 0.002777 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.823855 B =10078.969658 C =10341.524991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.144 3.856 3 C -0.166 4.166 4 C 0.063 3.937 5 F -0.205 7.205 6 N -0.735 5.735 7 C 0.514 3.486 8 O -0.511 6.511 9 C -0.079 4.079 10 C -0.170 4.170 11 C -0.056 4.056 12 C -0.233 4.233 13 C 0.157 3.843 14 O -0.178 6.178 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.864 5.864 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.192 4.192 24 C -0.059 4.059 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.397 0.603 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.270 0.730 39 H 0.116 0.884 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.660 -10.141 -20.160 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 C -0.224 4.224 4 C 0.008 3.992 5 F -0.187 7.187 6 N -0.390 5.390 7 C 0.301 3.699 8 O -0.384 6.384 9 C -0.119 4.119 10 C -0.172 4.172 11 C -0.074 4.074 12 C -0.252 4.252 13 C 0.103 3.897 14 O -0.081 6.081 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.499 5.499 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.211 4.211 24 C -0.077 4.077 25 H 0.105 0.895 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.231 0.769 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.144 0.856 38 H 0.080 0.920 39 H 0.134 0.866 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.180 -9.035 -19.739 22.570 hybrid contribution -0.553 -0.771 0.185 0.967 sum 5.627 -9.806 -19.553 22.586 Atomic orbital electron populations 1.22224 0.93363 1.02462 1.04360 1.20791 0.95647 0.93546 0.84248 1.22225 1.00822 0.94987 1.04358 1.22111 0.99824 0.95798 0.81502 1.92775 1.90748 1.83340 1.51791 1.46063 1.55270 1.32427 1.05194 1.21011 0.80077 0.84859 0.83928 1.90694 1.36029 1.25450 1.86262 1.20410 1.01602 0.99374 0.90540 1.18609 0.98002 1.02295 0.98270 1.20496 0.94279 0.97973 0.94687 1.21100 1.02656 1.01510 0.99929 1.19387 0.92060 0.90345 0.87880 1.83976 1.40443 1.49247 1.34475 1.21280 1.00277 1.19686 1.05531 0.89143 1.25283 0.99400 0.96212 0.95621 1.70029 1.38576 1.23437 1.17832 0.85788 0.80241 0.78853 0.78585 1.19525 1.20293 1.19504 1.20152 0.96502 1.04745 0.99720 1.20389 0.98204 0.94543 0.94601 0.89506 0.91492 0.92648 0.92638 0.91492 0.89512 0.90252 0.90268 0.76917 0.89002 0.89044 0.87889 0.85632 0.92000 0.86585 0.87440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 8.28 37.16 0.31 -1.47 16 2 C 0.14 1.32 0.91 -131.82 -0.12 1.20 16 3 C -0.17 -1.76 8.28 37.16 0.31 -1.45 16 4 C 0.06 0.42 6.48 37.16 0.24 0.66 16 5 F -0.21 -1.89 16.32 2.25 0.04 -1.86 16 6 N -0.73 -6.37 5.10 -47.61 -0.24 -6.61 16 7 C 0.51 6.50 7.24 -10.98 -0.08 6.42 16 8 O -0.51 -8.82 12.24 5.55 0.07 -8.75 16 9 C -0.08 -0.93 5.83 -29.04 -0.17 -1.10 16 10 C -0.17 -2.90 4.38 -104.58 -0.46 -3.36 16 11 C -0.06 -1.05 9.69 -39.61 -0.38 -1.44 16 12 C -0.23 -5.21 9.17 -39.39 -0.36 -5.58 16 13 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 14 O -0.18 -5.20 9.76 0.05 0.00 -5.20 16 15 C -0.39 -11.16 9.49 30.89 0.29 -10.86 16 16 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 17 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 18 N -0.86 -25.71 13.67 55.48 0.76 -24.95 16 19 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 C -0.19 -4.20 9.99 -39.39 -0.39 -4.59 16 24 C -0.06 -1.08 9.69 -39.61 -0.38 -1.46 16 25 H 0.09 1.20 6.17 -51.93 -0.32 0.88 16 26 H 0.07 0.68 7.80 -51.93 -0.41 0.27 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.67 7.80 -51.93 -0.41 0.27 16 30 H 0.09 1.19 6.17 -51.93 -0.32 0.87 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.40 2.03 8.47 -40.82 -0.35 1.68 16 34 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 40 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 338.01 15.07 5.09 5.09 Total: -1.00 -33.97 338.01 -6.16 -40.14 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.30 Total: 4.73 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -1.56 Total: -18.37 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.52 Total: -31.56 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.07 Total: -13.95 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.97 -6.16 -40.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119218798.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.146 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds