Wall clock time and date at job start Tue Mar 31 2020 07:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47177 * 2 1 4 4 C 1.53004 * 109.47528 * 240.00551 * 2 1 3 5 5 F 1.39896 * 109.47300 * 59.99282 * 4 2 1 6 6 N 1.46495 * 109.47334 * 120.00130 * 2 1 3 7 7 C 1.34775 * 120.00172 * 300.00109 * 6 2 1 8 8 O 1.21287 * 119.99798 * 0.02562 * 7 6 2 9 9 C 1.50705 * 120.00246 * 179.97438 * 7 6 2 10 10 C 1.50695 * 109.46992 * 180.02562 * 9 7 6 11 11 C 1.38299 * 119.93247 * 90.00201 * 10 9 7 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47517 * 59.99414 * 19 17 15 21 21 H 1.48505 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46989 * 299.99567 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.08995 * 109.46961 * 299.99519 * 1 2 3 26 26 H 1.08995 * 109.47288 * 59.99656 * 1 2 3 27 27 H 1.09005 * 109.47091 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47457 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47293 * 300.00341 * 3 2 1 30 30 H 1.09004 * 109.46769 * 59.99756 * 3 2 1 31 31 H 1.08998 * 109.47672 * 180.02562 * 4 2 1 32 32 H 1.09005 * 109.46733 * 299.99973 * 4 2 1 33 33 H 0.97005 * 120.00223 * 120.00451 * 6 2 1 34 34 H 1.08998 * 109.46621 * 60.00483 * 9 7 6 35 35 H 1.08996 * 109.47266 * 300.00146 * 9 7 6 36 36 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 37 37 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 38 38 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 40 40 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 9 1.5737 -0.0617 -2.3915 6 7 2.0183 -0.6906 1.1961 7 6 1.6928 -0.2302 2.4202 8 8 0.9951 0.7556 2.5316 9 6 2.1947 -0.9410 3.6507 10 6 1.6919 -0.2309 4.8811 11 6 0.4831 -0.5977 5.4441 12 6 0.0198 0.0506 6.5720 13 6 0.7691 1.0725 7.1406 14 8 0.3166 1.7114 8.2496 15 6 -0.8087 1.2314 8.8163 16 1 -1.3524 0.4283 8.3413 17 6 -1.2680 1.7692 10.0090 18 7 -0.6056 2.7473 10.5879 19 14 -2.8267 1.1038 10.7945 20 1 -2.6520 -0.3399 11.0955 21 1 -3.1006 1.8419 12.0537 22 1 -3.9665 1.2799 9.8591 23 6 1.9795 1.4428 6.5694 24 6 2.4400 0.7867 5.4448 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1301 -0.7215 -1.2491 32 1 1.6767 -1.7488 -1.2494 33 1 2.5761 -1.4793 1.1071 34 1 3.2847 -0.9413 3.6508 35 1 1.8310 -1.9685 3.6505 36 1 -0.0988 -1.3927 5.0017 37 1 -0.9239 -0.2366 7.0113 38 1 -0.9271 3.1237 11.4221 39 1 2.5622 2.2400 7.0067 40 1 3.3833 1.0712 5.0026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119218798.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:07 Heat of formation + Delta-G solvation = -119.692717 kcal Electronic energy + Delta-G solvation = -23146.764087 eV Core-core repulsion = 19454.501504 eV Total energy + Delta-G solvation = -3692.262583 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.65411 -41.24007 -40.53633 -38.39250 -37.06192 -34.40148 -33.45514 -32.00979 -31.73904 -28.31315 -28.16440 -27.85864 -26.91465 -23.62185 -22.99182 -21.52857 -20.60482 -19.83441 -18.87153 -18.31853 -17.51614 -16.87146 -16.58395 -16.46104 -16.18328 -15.83923 -15.82001 -15.53855 -15.34603 -15.01351 -14.65868 -14.41621 -14.34893 -14.08384 -13.82723 -13.60185 -13.19075 -13.08454 -12.93561 -12.64838 -12.42551 -12.33704 -12.24617 -12.19789 -12.12673 -11.84998 -11.77907 -11.17268 -10.80843 -10.51925 -10.08250 -9.74620 -8.88221 -8.47140 -6.15436 0.63153 0.69260 1.33663 1.44801 1.50444 1.79546 2.16007 2.17961 2.85356 3.18979 3.41725 3.53288 3.73859 3.89377 3.96639 4.07730 4.12845 4.18817 4.23363 4.43918 4.53085 4.56290 4.60899 4.71911 4.75296 4.78325 4.82773 4.86140 4.94255 5.11599 5.15268 5.30157 5.30660 5.32697 5.58460 5.58770 5.73110 5.80021 6.03269 6.25446 6.70503 6.97278 7.44545 7.79255 8.76277 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.032331 B = 0.002777 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.823855 B =10078.969658 C =10341.524991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.143 3.857 3 C -0.164 4.164 4 C 0.065 3.935 5 F -0.221 7.221 6 N -0.711 5.711 7 C 0.514 3.486 8 O -0.566 6.566 9 C -0.077 4.077 10 C -0.143 4.143 11 C -0.060 4.060 12 C -0.245 4.245 13 C 0.111 3.889 14 O -0.235 6.235 15 C -0.415 4.415 16 H 0.100 0.900 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 1.020 2.980 20 H -0.255 1.255 21 H -0.270 1.270 22 H -0.259 1.259 23 C -0.208 4.208 24 C -0.057 4.057 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.420 0.580 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.116 0.884 38 H 0.273 0.727 39 H 0.110 0.890 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.805 -13.627 -23.226 28.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.057 3.943 3 C -0.222 4.222 4 C 0.010 3.990 5 F -0.202 7.202 6 N -0.366 5.366 7 C 0.302 3.698 8 O -0.444 6.444 9 C -0.117 4.117 10 C -0.144 4.144 11 C -0.078 4.078 12 C -0.265 4.265 13 C 0.061 3.939 14 O -0.142 6.142 15 C -0.491 4.491 16 H 0.117 0.883 17 C -0.221 4.221 18 N -0.561 5.561 19 Si 0.838 3.162 20 H -0.179 1.179 21 H -0.195 1.195 22 H -0.184 1.184 23 C -0.228 4.228 24 C -0.075 4.075 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.258 0.742 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.134 0.866 38 H 0.082 0.918 39 H 0.128 0.872 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.381 -12.591 -22.887 27.144 hybrid contribution -0.707 0.211 0.780 1.074 sum 6.674 -12.380 -22.107 26.202 Atomic orbital electron populations 1.22175 0.94803 1.02721 1.02584 1.20789 0.94609 0.93240 0.85708 1.22175 1.01603 0.95881 1.02591 1.22254 1.01411 0.96206 0.79099 1.92750 1.91084 1.83834 1.52574 1.45744 1.54406 1.32600 1.03841 1.21094 0.79396 0.84115 0.85191 1.90725 1.38632 1.27934 1.87082 1.20538 1.04005 1.00142 0.86985 1.19265 0.96180 1.00203 0.98798 1.20933 0.95280 0.98261 0.93297 1.21230 1.02343 1.01548 1.01337 1.19947 0.93887 0.92103 0.87935 1.83935 1.41624 1.51707 1.36902 1.21787 1.00755 1.20282 1.06294 0.88272 1.26618 1.03304 0.96362 0.95841 1.70182 1.41280 1.25806 1.18815 0.84644 0.75257 0.78703 0.77565 1.17920 1.19477 1.18356 1.20445 0.95866 1.05331 1.01111 1.20875 0.99684 0.93929 0.93005 0.93050 0.91539 0.91302 0.91229 0.91553 0.93026 0.87528 0.87593 0.74158 0.85063 0.85309 0.84406 0.86635 0.91826 0.87202 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.28 71.98 0.60 -2.64 16 2 C 0.14 2.17 0.91 3.60 0.00 2.18 16 3 C -0.16 -3.20 8.28 71.98 0.60 -2.61 16 4 C 0.07 0.57 6.48 71.98 0.47 1.03 16 5 F -0.22 -3.38 16.32 44.97 0.73 -2.65 16 6 N -0.71 -8.98 5.10 -422.92 -2.16 -11.14 16 7 C 0.51 10.99 7.24 87.66 0.63 11.63 16 8 O -0.57 -18.71 12.24 -3.05 -0.04 -18.75 16 9 C -0.08 -1.37 5.83 29.10 0.17 -1.20 16 10 C -0.14 -4.41 4.38 -19.84 -0.09 -4.50 16 11 C -0.06 -2.13 9.69 22.25 0.22 -1.91 16 12 C -0.25 -11.28 9.17 22.39 0.21 -11.07 16 13 C 0.11 5.86 6.65 22.58 0.15 6.01 16 14 O -0.23 -14.80 9.76 -22.72 -0.22 -15.03 16 15 C -0.42 -25.15 9.49 67.92 0.64 -24.51 16 16 H 0.10 5.53 5.20 -2.91 -0.02 5.51 16 17 C -0.02 -1.41 5.49 84.84 0.47 -0.95 16 18 N -0.92 -58.29 13.67 21.62 0.30 -57.99 16 19 Si 1.02 44.09 29.55 68.60 2.03 46.12 16 20 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 23 C -0.21 -9.39 9.99 22.39 0.22 -9.17 16 24 C -0.06 -1.97 9.69 22.25 0.22 -1.76 16 25 H 0.05 1.41 6.17 -2.39 -0.01 1.39 16 26 H 0.07 1.28 7.80 -2.39 -0.02 1.26 16 27 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.26 7.80 -2.39 -0.02 1.25 16 30 H 0.05 1.40 6.17 -2.38 -0.01 1.39 16 31 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.42 1.59 8.47 -92.70 -0.79 0.81 16 34 H 0.13 1.45 8.08 -2.39 -0.02 1.43 16 35 H 0.13 1.48 8.08 -2.39 -0.02 1.46 16 36 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 37 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 38 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 39 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 40 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -83.72 338.01 5.42 -78.30 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.28 Total: 20.61 kcal Atomic # 6 Polarization: -43.97 SS G_CDS: 4.50 Total: -39.47 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: -1.86 Total: -69.13 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.26 Total: -33.78 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.73 Total: -2.65 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -83.72 5.42 -78.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119218798.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.388 kcal (2) G-P(sol) polarization free energy of solvation -83.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds