Wall clock time and date at job start Tue Mar 31 2020 07:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47604 * 2 1 4 4 C 1.53008 * 109.47044 * 120.00222 * 2 1 3 5 5 C 1.52998 * 109.46807 * 64.99913 * 4 2 1 6 6 H 1.08996 * 109.47159 * 304.99690 * 5 4 2 7 7 O 1.42897 * 109.47549 * 65.00164 * 5 4 2 8 8 C 1.50700 * 109.46697 * 185.00521 * 5 4 2 9 9 O 1.21293 * 119.99732 * 244.99598 * 8 5 4 10 10 N 1.34774 * 120.00359 * 64.99396 * 8 5 4 11 11 C 1.40013 * 119.99928 * 175.49115 * 10 8 5 12 12 C 1.39369 * 119.90967 * 215.51177 * 11 10 8 13 13 C 1.38359 * 120.47100 * 179.74962 * 12 11 10 14 14 C 1.38012 * 120.28769 * 0.27046 * 13 12 11 15 15 F 1.35098 * 120.09526 * 179.97438 * 14 13 12 16 16 C 1.41006 * 119.81120 * 359.97438 * 14 13 12 17 17 C 1.41294 * 120.22972 * 180.02562 * 16 14 13 18 18 H 1.07994 * 119.99686 * 24.73946 * 17 16 14 19 19 C 1.39926 * 120.00123 * 204.74209 * 17 16 14 20 20 N 1.30857 * 119.99780 * 15.34923 * 19 17 16 21 21 Si 1.86797 * 120.00114 * 195.35265 * 19 17 16 22 22 H 1.48496 * 109.46945 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47055 * 119.99768 * 21 19 17 24 24 H 1.48496 * 109.47030 * 239.99609 * 21 19 17 25 25 C 1.38143 * 119.91301 * 35.76684 * 11 10 8 26 26 H 1.09013 * 109.46642 * 59.99956 * 1 2 3 27 27 H 1.08991 * 109.47362 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46936 * 300.00265 * 1 2 3 29 29 H 1.09008 * 109.47485 * 240.00079 * 2 1 3 30 30 H 1.09002 * 109.47383 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47061 * 299.99977 * 3 2 1 32 32 H 1.09000 * 109.47190 * 59.99891 * 3 2 1 33 33 H 1.08996 * 109.46758 * 304.99786 * 4 2 1 34 34 H 1.08996 * 109.46686 * 184.99721 * 4 2 1 35 35 H 0.96699 * 113.99830 * 59.99753 * 7 5 4 36 36 H 0.97002 * 120.00244 * 355.49717 * 10 8 5 37 37 H 1.08003 * 119.76487 * 0.02562 * 12 11 10 38 38 H 1.08003 * 119.86269 * 180.25223 * 13 12 11 39 39 H 0.97003 * 119.99695 * 180.02562 * 20 19 17 40 40 H 1.07996 * 120.14181 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1879 6 1 0.5562 -2.2707 1.0527 7 8 2.2979 -2.8262 0.0902 8 6 2.0291 -2.8784 2.4722 9 8 2.8695 -3.7530 2.4609 10 7 1.4478 -2.5175 3.6333 11 6 1.7437 -3.2147 4.8108 12 6 0.7506 -3.4155 5.7678 13 6 1.0289 -4.1073 6.9333 14 6 2.2967 -4.6020 7.1632 15 9 2.5643 -5.2765 8.3028 16 6 3.3118 -4.4014 6.2054 17 6 4.6127 -4.9044 6.4315 18 1 4.7584 -5.7483 7.0895 19 6 5.7121 -4.3092 5.8030 20 7 5.5919 -3.1264 5.2563 21 14 7.3512 -5.2031 5.7442 22 1 7.2249 -6.5142 6.4300 23 1 7.7463 -5.4201 4.3292 24 1 8.3857 -4.3854 6.4272 25 6 3.0206 -3.6973 5.0233 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6054 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2951 35 1 3.2629 -2.7974 0.1443 36 1 0.8242 -1.7747 3.6532 37 1 -0.2444 -3.0321 5.5965 38 1 0.2509 -4.2608 7.6664 39 1 6.3539 -2.7140 4.8202 40 1 3.7906 -3.5382 4.2830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144182109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:19 Heat of formation + Delta-G solvation = -133.772440 kcal Electronic energy + Delta-G solvation = -23890.931228 eV Core-core repulsion = 20198.058103 eV Total energy + Delta-G solvation = -3692.873126 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.19201 -40.07184 -37.87854 -36.68897 -35.24363 -34.32243 -33.27028 -30.05202 -29.76106 -27.69477 -27.35736 -25.44710 -24.46288 -21.83439 -20.99324 -20.23414 -19.72532 -18.09444 -17.24807 -16.33526 -16.07560 -16.02829 -15.57737 -15.02118 -14.68444 -14.34430 -14.28624 -14.00067 -13.93497 -13.47600 -13.03041 -12.78587 -12.60371 -12.37824 -12.01894 -11.91769 -11.87406 -11.77057 -11.61696 -11.27524 -11.19705 -11.03633 -10.92511 -10.78397 -10.49050 -10.47892 -10.24348 -9.80348 -9.41278 -9.12109 -8.80527 -7.58980 -6.96411 -6.78326 -4.44323 2.42279 2.74317 3.04350 3.07364 3.13921 3.21165 3.55146 3.91010 4.28194 4.50604 4.63874 4.69587 4.74998 5.00608 5.10172 5.25449 5.45644 5.47693 5.54312 5.60293 5.66827 5.75709 5.80992 5.88572 5.99548 6.06874 6.14657 6.22761 6.36818 6.69848 6.86315 6.93496 7.13175 7.37701 7.48648 7.57704 7.64493 7.98006 8.05541 8.22525 8.43601 8.70747 8.74676 8.81248 10.09590 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.004688 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.574403 B = 5971.136526 C = 7175.758173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.144 4.144 5 C 0.095 3.905 6 H 0.122 0.878 7 O -0.539 6.539 8 C 0.473 3.527 9 O -0.506 6.506 10 N -0.662 5.662 11 C 0.130 3.870 12 C -0.242 4.242 13 C -0.108 4.108 14 C -0.041 4.041 15 F -0.164 7.164 16 C 0.092 3.908 17 C -0.445 4.445 18 H 0.085 0.915 19 C 0.075 3.925 20 N -0.784 5.784 21 Si 0.914 3.086 22 H -0.258 1.258 23 H -0.270 1.270 24 H -0.273 1.273 25 C -0.137 4.137 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.383 0.617 36 H 0.398 0.602 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.282 0.718 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.317 8.659 -9.551 14.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.182 4.182 5 C 0.032 3.968 6 H 0.140 0.860 7 O -0.344 6.344 8 C 0.258 3.742 9 O -0.380 6.380 10 N -0.307 5.307 11 C 0.038 3.962 12 C -0.264 4.264 13 C -0.127 4.127 14 C -0.062 4.062 15 F -0.143 7.143 16 C 0.088 3.912 17 C -0.474 4.474 18 H 0.103 0.897 19 C -0.144 4.144 20 N -0.408 5.408 21 Si 0.738 3.262 22 H -0.182 1.182 23 H -0.195 1.195 24 H -0.198 1.198 25 C -0.158 4.158 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.232 0.768 36 H 0.232 0.768 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.093 0.907 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.155 8.072 -9.898 14.178 hybrid contribution 0.888 0.137 0.494 1.026 sum -5.266 8.208 -9.404 13.548 Atomic orbital electron populations 1.21927 0.95272 1.01928 1.01785 1.21051 0.95881 0.95918 0.98270 1.21847 1.01099 0.95891 1.01692 1.22340 1.02566 0.94000 0.99331 1.21900 0.98988 0.91143 0.84801 0.86035 1.86530 1.24752 1.80413 1.42711 1.21585 0.82602 0.84271 0.85716 1.90781 1.30516 1.30661 1.86011 1.43389 1.46162 1.34141 1.07043 1.17636 0.94159 0.98745 0.85660 1.19844 0.97138 1.12070 0.97314 1.20234 0.94651 1.00277 0.97582 1.17874 0.95589 1.07408 0.85322 1.91262 1.94894 1.79193 1.48976 1.17543 0.92360 0.91606 0.89658 1.19572 0.90431 1.13591 1.23802 0.89725 1.25929 1.01578 0.94066 0.92779 1.69797 1.32703 1.12288 1.26031 0.86152 0.80264 0.80688 0.79078 1.18172 1.19463 1.19822 1.21458 0.93991 1.02717 0.97658 0.92681 0.92345 0.92591 0.90276 0.92648 0.92729 0.92645 0.90389 0.90639 0.76773 0.76792 0.88300 0.87787 0.90746 0.82954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.95 37.16 0.33 -0.88 16 2 C -0.09 -0.82 2.87 -90.62 -0.26 -1.08 16 3 C -0.15 -1.20 9.19 37.16 0.34 -0.85 16 4 C -0.14 -1.51 4.33 -26.73 -0.12 -1.63 16 5 C 0.09 1.21 3.24 -27.88 -0.09 1.12 16 6 H 0.12 1.35 6.34 -51.93 -0.33 1.02 16 7 O -0.54 -7.46 12.45 -55.09 -0.69 -8.15 16 8 C 0.47 8.50 7.00 -10.99 -0.08 8.42 16 9 O -0.51 -11.64 13.80 -14.31 -0.20 -11.84 16 10 N -0.66 -11.69 5.26 -9.89 -0.05 -11.74 16 11 C 0.13 2.94 6.28 -83.73 -0.53 2.42 16 12 C -0.24 -5.14 9.97 -39.12 -0.39 -5.53 16 13 C -0.11 -2.44 10.00 -39.62 -0.40 -2.84 16 14 C -0.04 -1.08 7.31 -38.62 -0.28 -1.36 16 15 F -0.16 -4.22 16.71 2.25 0.04 -4.18 16 16 C 0.09 2.56 5.58 -106.78 -0.60 1.96 16 17 C -0.45 -12.34 8.79 -37.79 -0.33 -12.67 16 18 H 0.08 2.31 7.72 -52.49 -0.41 1.90 16 19 C 0.08 1.94 5.19 -17.33 -0.09 1.85 16 20 N -0.78 -20.45 10.83 55.55 0.60 -19.85 16 21 Si 0.91 19.32 29.59 -169.99 -5.03 14.29 16 22 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 25 C -0.14 -3.62 7.32 -38.71 -0.28 -3.91 16 26 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.06 0.48 6.46 -51.93 -0.34 0.14 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.76 7.70 -51.92 -0.40 0.36 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.76 7.65 -51.93 -0.40 0.36 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.38 4.74 8.79 45.56 0.40 5.14 16 36 H 0.40 5.32 8.38 -40.82 -0.34 4.98 16 37 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 38 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 39 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 40 H 0.15 4.26 4.28 -52.49 -0.22 4.04 16 LS Contribution 336.57 15.07 5.07 5.07 Total: -1.00 -31.59 336.57 -7.57 -39.16 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -4.55 Total: 12.22 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -2.76 Total: -14.97 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.55 Total: -31.59 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.88 Total: -19.99 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.04 Total: -4.18 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.59 -7.57 -39.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144182109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.617 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds