Wall clock time and date at job start Tue Mar 31 2020 07:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47604 * 2 1 4 4 C 1.53008 * 109.47044 * 120.00222 * 2 1 3 5 5 C 1.52998 * 109.46807 * 64.99913 * 4 2 1 6 6 H 1.08996 * 109.47159 * 304.99690 * 5 4 2 7 7 O 1.42897 * 109.47549 * 65.00164 * 5 4 2 8 8 C 1.50700 * 109.46697 * 185.00521 * 5 4 2 9 9 O 1.21293 * 119.99732 * 244.99598 * 8 5 4 10 10 N 1.34774 * 120.00359 * 64.99396 * 8 5 4 11 11 C 1.40013 * 119.99928 * 175.49115 * 10 8 5 12 12 C 1.39369 * 119.90967 * 215.51177 * 11 10 8 13 13 C 1.38359 * 120.47100 * 179.74962 * 12 11 10 14 14 C 1.38012 * 120.28769 * 0.27046 * 13 12 11 15 15 F 1.35098 * 120.09526 * 179.97438 * 14 13 12 16 16 C 1.41006 * 119.81120 * 359.97438 * 14 13 12 17 17 C 1.41294 * 120.22972 * 180.02562 * 16 14 13 18 18 H 1.07994 * 119.99686 * 24.73946 * 17 16 14 19 19 C 1.39926 * 120.00123 * 204.74209 * 17 16 14 20 20 N 1.30857 * 119.99780 * 15.34923 * 19 17 16 21 21 Si 1.86797 * 120.00114 * 195.35265 * 19 17 16 22 22 H 1.48496 * 109.46945 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47055 * 119.99768 * 21 19 17 24 24 H 1.48496 * 109.47030 * 239.99609 * 21 19 17 25 25 C 1.38143 * 119.91301 * 35.76684 * 11 10 8 26 26 H 1.09013 * 109.46642 * 59.99956 * 1 2 3 27 27 H 1.08991 * 109.47362 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46936 * 300.00265 * 1 2 3 29 29 H 1.09008 * 109.47485 * 240.00079 * 2 1 3 30 30 H 1.09002 * 109.47383 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47061 * 299.99977 * 3 2 1 32 32 H 1.09000 * 109.47190 * 59.99891 * 3 2 1 33 33 H 1.08996 * 109.46758 * 304.99786 * 4 2 1 34 34 H 1.08996 * 109.46686 * 184.99721 * 4 2 1 35 35 H 0.96699 * 113.99830 * 59.99753 * 7 5 4 36 36 H 0.97002 * 120.00244 * 355.49717 * 10 8 5 37 37 H 1.08003 * 119.76487 * 0.02562 * 12 11 10 38 38 H 1.08003 * 119.86269 * 180.25223 * 13 12 11 39 39 H 0.97003 * 119.99695 * 180.02562 * 20 19 17 40 40 H 1.07996 * 120.14181 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1879 6 1 0.5562 -2.2707 1.0527 7 8 2.2979 -2.8262 0.0902 8 6 2.0291 -2.8784 2.4722 9 8 2.8695 -3.7530 2.4609 10 7 1.4478 -2.5175 3.6333 11 6 1.7437 -3.2147 4.8108 12 6 0.7506 -3.4155 5.7678 13 6 1.0289 -4.1073 6.9333 14 6 2.2967 -4.6020 7.1632 15 9 2.5643 -5.2765 8.3028 16 6 3.3118 -4.4014 6.2054 17 6 4.6127 -4.9044 6.4315 18 1 4.7584 -5.7483 7.0895 19 6 5.7121 -4.3092 5.8030 20 7 5.5919 -3.1264 5.2563 21 14 7.3512 -5.2031 5.7442 22 1 7.2249 -6.5142 6.4300 23 1 7.7463 -5.4201 4.3292 24 1 8.3857 -4.3854 6.4272 25 6 3.0206 -3.6973 5.0233 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6054 -0.2618 2.1370 34 1 3.1263 -0.6444 1.2951 35 1 3.2629 -2.7974 0.1443 36 1 0.8242 -1.7747 3.6532 37 1 -0.2444 -3.0321 5.5965 38 1 0.2509 -4.2608 7.6664 39 1 6.3539 -2.7140 4.8202 40 1 3.7906 -3.5382 4.2830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144182109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:18 Heat of formation + Delta-G solvation = -154.408171 kcal Electronic energy + Delta-G solvation = -23891.826061 eV Core-core repulsion = 20198.058103 eV Total energy + Delta-G solvation = -3693.767958 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.18269 -41.51691 -39.33079 -38.08046 -36.37350 -35.91620 -35.00839 -31.72823 -31.20572 -29.23116 -27.96907 -27.36744 -25.58587 -23.61435 -22.68681 -21.30199 -20.97979 -19.76942 -18.74384 -17.98275 -17.86784 -17.19472 -17.04738 -16.58803 -16.29966 -15.95822 -15.63823 -15.44119 -15.00168 -14.75712 -14.63147 -14.40042 -13.78604 -13.64997 -13.54873 -13.50286 -13.06766 -12.99334 -12.90138 -12.76976 -12.63326 -12.30555 -12.17181 -12.07117 -11.80782 -11.62293 -11.50063 -11.38173 -11.26047 -10.76688 -10.37903 -9.50654 -8.81673 -8.64094 -6.46734 0.62317 0.89846 1.31311 1.39787 1.47278 1.64986 2.14780 2.15295 2.62333 3.23749 3.50089 3.66643 3.80927 3.93015 4.04722 4.11700 4.23110 4.31976 4.48747 4.64140 4.76895 4.82332 4.90143 4.95666 4.97461 5.03999 5.10404 5.10519 5.13153 5.21469 5.34621 5.50424 5.55741 5.61600 5.72551 5.77041 6.06023 6.19301 6.43758 6.49930 6.65973 6.76555 6.86059 7.28613 8.21831 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.004688 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.574403 B = 5971.136526 C = 7175.758173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 C -0.147 4.147 4 C -0.138 4.138 5 C 0.110 3.890 6 H 0.149 0.851 7 O -0.548 6.548 8 C 0.468 3.532 9 O -0.561 6.561 10 N -0.649 5.649 11 C 0.133 3.867 12 C -0.222 4.222 13 C -0.104 4.104 14 C -0.075 4.075 15 F -0.171 7.171 16 C 0.059 3.941 17 C -0.492 4.492 18 H 0.070 0.930 19 C 0.036 3.964 20 N -0.811 5.811 21 Si 0.983 3.017 22 H -0.261 1.261 23 H -0.264 1.264 24 H -0.256 1.256 25 C -0.167 4.167 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.388 0.612 36 H 0.422 0.578 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.289 0.711 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.256 10.248 -10.568 16.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.106 4.106 3 C -0.205 4.205 4 C -0.176 4.176 5 C 0.047 3.953 6 H 0.166 0.834 7 O -0.354 6.354 8 C 0.256 3.744 9 O -0.439 6.439 10 N -0.296 5.296 11 C 0.039 3.961 12 C -0.243 4.243 13 C -0.124 4.124 14 C -0.095 4.095 15 F -0.151 7.151 16 C 0.055 3.945 17 C -0.521 4.521 18 H 0.088 0.912 19 C -0.180 4.180 20 N -0.436 5.436 21 Si 0.803 3.197 22 H -0.184 1.184 23 H -0.188 1.188 24 H -0.180 1.180 25 C -0.188 4.188 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.081 0.919 35 H 0.237 0.763 36 H 0.261 0.739 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.100 0.900 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.141 9.711 -10.923 16.730 hybrid contribution 1.316 -0.293 0.769 1.552 sum -6.825 9.418 -10.153 15.439 Atomic orbital electron populations 1.21940 0.94132 1.02130 1.02745 1.21002 0.96768 0.96016 0.96806 1.21840 1.00781 0.95398 1.02439 1.22323 1.02002 0.92335 1.00944 1.22019 1.00098 0.91650 0.81482 0.83398 1.86509 1.25326 1.80791 1.42779 1.22668 0.81198 0.83425 0.87097 1.90769 1.32934 1.33263 1.86897 1.43308 1.46372 1.34368 1.05575 1.17804 0.93157 0.97714 0.87381 1.20382 0.98685 1.09613 0.95630 1.20667 0.93968 0.98967 0.98766 1.18256 0.96991 1.08915 0.85357 1.91225 1.95120 1.79516 1.49199 1.17918 0.93124 0.92653 0.90780 1.19716 0.91918 1.14584 1.25909 0.91155 1.26731 1.04705 0.94586 0.91958 1.69832 1.34001 1.13249 1.26561 0.85150 0.75957 0.79338 0.79279 1.18423 1.18820 1.18025 1.21387 0.95556 1.04675 0.97213 0.91901 0.92461 0.91580 0.91049 0.93237 0.91705 0.92191 0.89111 0.91883 0.76265 0.73903 0.83317 0.84306 0.90021 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.95 71.98 0.64 -1.25 16 2 C -0.09 -1.33 2.87 -10.79 -0.03 -1.36 16 3 C -0.15 -2.03 9.19 71.98 0.66 -1.36 16 4 C -0.14 -2.59 4.33 30.60 0.13 -2.46 16 5 C 0.11 2.60 3.24 29.85 0.10 2.70 16 6 H 0.15 2.77 6.34 -2.39 -0.02 2.75 16 7 O -0.55 -14.61 12.45 -129.99 -1.62 -16.23 16 8 C 0.47 16.41 7.00 87.66 0.61 17.02 16 9 O -0.56 -26.43 13.80 15.92 0.22 -26.21 16 10 N -0.65 -21.57 5.26 -303.60 -1.60 -23.16 16 11 C 0.13 5.87 6.28 38.08 0.24 6.10 16 12 C -0.22 -8.73 9.97 22.57 0.22 -8.51 16 13 C -0.10 -4.53 10.00 22.25 0.22 -4.31 16 14 C -0.07 -3.95 7.31 22.89 0.17 -3.79 16 15 F -0.17 -9.08 16.71 44.97 0.75 -8.33 16 16 C 0.06 3.40 5.58 -21.26 -0.12 3.28 16 17 C -0.49 -28.85 8.79 23.43 0.21 -28.64 16 18 H 0.07 4.12 7.72 -2.91 -0.02 4.09 16 19 C 0.04 1.94 5.19 85.25 0.44 2.38 16 20 N -0.81 -44.05 10.83 21.82 0.24 -43.82 16 21 Si 0.98 40.99 29.59 68.60 2.03 43.02 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 25 C -0.17 -9.07 7.32 22.83 0.17 -8.91 16 26 H 0.06 0.70 8.14 -2.38 -0.02 0.69 16 27 H 0.06 0.73 6.46 -2.39 -0.02 0.71 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 1.22 7.70 -2.38 -0.02 1.20 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.09 1.48 7.65 -2.39 -0.02 1.46 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.39 9.60 8.79 -74.06 -0.65 8.94 16 36 H 0.42 9.71 8.38 -92.71 -0.78 8.93 16 37 H 0.15 4.38 8.06 -2.91 -0.02 4.36 16 38 H 0.14 4.99 8.06 -2.91 -0.02 4.97 16 39 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 40 H 0.13 7.71 4.28 -2.91 -0.01 7.70 16 Total: -1.00 -72.96 336.57 3.35 -69.61 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: -0.34 Total: 34.21 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: 3.67 Total: -29.10 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: -1.36 Total: -66.98 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -1.40 Total: -42.44 kcal Atomic # 9 Polarization: -9.08 SS G_CDS: 0.75 Total: -8.33 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -72.96 3.35 -69.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144182109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.801 kcal (2) G-P(sol) polarization free energy of solvation -72.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds