Wall clock time and date at job start Tue Mar 31 2020 07:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47267 * 2 1 4 4 C 1.52997 * 109.47367 * 240.00023 * 2 1 3 5 5 C 1.53005 * 109.46888 * 294.50838 * 4 2 1 6 6 H 1.08997 * 109.47082 * 56.93078 * 5 4 2 7 7 O 1.42904 * 109.46954 * 296.92484 * 5 4 2 8 8 C 1.50700 * 109.46877 * 176.93210 * 5 4 2 9 9 O 1.21285 * 120.00442 * 115.00245 * 8 5 4 10 10 N 1.34780 * 119.99623 * 294.99459 * 8 5 4 11 11 C 1.40005 * 119.99839 * 174.96783 * 10 8 5 12 12 C 1.39367 * 119.91423 * 327.03330 * 11 10 8 13 13 C 1.38367 * 120.47175 * 179.72005 * 12 11 10 14 14 C 1.38001 * 120.28760 * 0.54922 * 13 12 11 15 15 F 1.35096 * 120.09719 * 179.70656 * 14 13 12 16 16 C 1.41011 * 119.81181 * 359.72330 * 14 13 12 17 17 C 1.41293 * 120.22914 * 179.97438 * 16 14 13 18 18 H 1.08000 * 119.99993 * 26.72626 * 17 16 14 19 19 C 1.39926 * 120.00242 * 206.72805 * 17 16 14 20 20 N 1.30857 * 119.99787 * 13.12449 * 19 17 16 21 21 Si 1.86797 * 120.00185 * 193.13117 * 19 17 16 22 22 H 1.48501 * 109.47015 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47129 * 119.99764 * 21 19 17 24 24 H 1.48499 * 109.46951 * 239.99600 * 21 19 17 25 25 C 1.38151 * 119.90899 * 147.30002 * 11 10 8 26 26 H 1.09000 * 109.46850 * 59.99643 * 1 2 3 27 27 H 1.09000 * 109.47138 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46966 * 300.00369 * 1 2 3 29 29 H 1.09002 * 109.46744 * 119.99580 * 2 1 3 30 30 H 1.09008 * 109.46925 * 55.31146 * 3 2 1 31 31 H 1.08998 * 109.47434 * 175.31455 * 3 2 1 32 32 H 1.09000 * 109.46971 * 295.31605 * 3 2 1 33 33 H 1.08997 * 109.46871 * 54.50409 * 4 2 1 34 34 H 1.09000 * 109.47307 * 174.50600 * 4 2 1 35 35 H 0.96695 * 114.00448 * 300.00598 * 7 5 4 36 36 H 0.97000 * 120.00496 * 354.97078 * 10 8 5 37 37 H 1.08007 * 119.76346 * 359.97438 * 12 11 10 38 38 H 1.08000 * 119.85693 * 180.25059 * 13 12 11 39 39 H 0.97000 * 119.99780 * 180.02562 * 20 19 17 40 40 H 1.07995 * 120.14584 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6459 -2.1981 -1.1821 6 1 0.5642 -2.2810 -1.0767 7 8 2.2824 -2.8104 -0.0586 8 6 2.0822 -2.8924 -2.4465 9 8 2.9291 -3.7594 -2.4011 10 7 1.5310 -2.5499 -3.6278 11 6 2.0094 -3.1184 -4.8144 12 6 3.3589 -3.4452 -4.9338 13 6 3.8430 -4.0129 -6.0992 14 6 2.9951 -4.2514 -7.1615 15 9 3.4730 -4.8004 -8.2997 16 6 1.6285 -3.9202 -7.0559 17 6 0.7527 -4.1602 -8.1383 18 1 0.9718 -4.9457 -8.8464 19 6 -0.3986 -3.3801 -8.2930 20 7 -0.5387 -2.2767 -7.6036 21 14 -1.7356 -3.9138 -9.4834 22 1 -1.3379 -5.1872 -10.1358 23 1 -3.0072 -4.1125 -8.7428 24 1 -1.9240 -2.8656 -10.5183 25 6 1.1434 -3.3489 -5.8659 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6098 1.9800 0.8451 31 1 3.1268 1.4437 0.0839 32 1 1.7469 1.9315 -0.9290 33 1 1.5986 -0.2674 -2.1364 34 1 3.1256 -0.6368 -1.2997 35 1 3.2483 -2.7737 -0.0855 36 1 0.8030 -1.9095 -3.6559 37 1 4.0310 -3.2578 -4.1093 38 1 4.8898 -4.2659 -6.1795 39 1 -1.3370 -1.7361 -7.7105 40 1 0.0985 -3.0918 -5.7742 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144182110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:22 Heat of formation + Delta-G solvation = -136.199425 kcal Electronic energy + Delta-G solvation = -23600.155101 eV Core-core repulsion = 19907.176734 eV Total energy + Delta-G solvation = -3692.978367 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -47.24417 -40.17983 -37.94563 -36.80188 -35.30317 -34.28877 -33.40347 -30.11869 -29.78870 -27.83579 -27.36839 -25.43917 -24.52331 -21.76947 -21.19606 -20.26246 -19.86067 -17.81264 -17.62085 -16.33415 -16.31335 -16.00081 -15.54701 -15.11585 -14.78681 -14.31687 -14.24718 -14.09031 -13.98534 -13.67129 -13.07266 -12.81590 -12.67914 -12.39670 -12.11536 -12.06291 -11.92003 -11.67350 -11.57366 -11.31033 -11.23969 -11.10592 -11.03176 -10.80695 -10.74038 -10.54092 -10.27844 -9.72309 -9.48911 -9.27681 -8.95633 -7.63558 -7.06883 -6.77763 -4.51922 2.31280 2.66367 2.97549 3.01598 3.08416 3.15866 3.47516 3.85149 4.19971 4.47301 4.58909 4.65669 4.70888 4.96585 5.02643 5.20984 5.38363 5.44588 5.50923 5.57176 5.64781 5.72517 5.77657 5.90895 5.96439 6.06181 6.11735 6.20777 6.47761 6.62175 6.77474 6.81273 7.07051 7.38869 7.42609 7.51382 7.59351 7.85542 7.89760 8.12060 8.38402 8.56328 8.65615 8.74675 10.04840 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016654 B = 0.004057 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.859111 B = 6899.444308 C = 8013.539363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.144 4.144 5 C 0.093 3.907 6 H 0.123 0.877 7 O -0.538 6.538 8 C 0.476 3.524 9 O -0.520 6.520 10 N -0.659 5.659 11 C 0.138 3.862 12 C -0.205 4.205 13 C -0.113 4.113 14 C -0.030 4.030 15 F -0.162 7.162 16 C 0.097 3.903 17 C -0.452 4.452 18 H 0.084 0.916 19 C 0.075 3.925 20 N -0.798 5.798 21 Si 0.914 3.086 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.163 4.163 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.382 0.618 36 H 0.404 0.596 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.281 0.719 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.760 7.424 11.871 14.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.182 4.182 5 C 0.030 3.970 6 H 0.141 0.859 7 O -0.342 6.342 8 C 0.262 3.738 9 O -0.395 6.395 10 N -0.304 5.304 11 C 0.046 3.954 12 C -0.226 4.226 13 C -0.133 4.133 14 C -0.051 4.051 15 F -0.142 7.142 16 C 0.093 3.907 17 C -0.481 4.481 18 H 0.102 0.898 19 C -0.142 4.142 20 N -0.424 5.424 21 Si 0.739 3.261 22 H -0.183 1.183 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.184 4.184 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.230 0.770 36 H 0.239 0.761 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.092 0.908 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.900 6.890 12.120 13.971 hybrid contribution -0.363 0.247 -1.016 1.107 sum -1.262 7.136 11.104 13.260 Atomic orbital electron populations 1.21930 0.95160 1.02004 1.01893 1.21044 0.96010 0.95885 0.98137 1.21851 1.00926 0.95913 1.01862 1.22329 1.02344 0.93873 0.99625 1.21907 0.99397 0.91304 0.84376 0.85913 1.86553 1.25028 1.81176 1.41491 1.21605 0.82889 0.83690 0.85624 1.90719 1.32020 1.30558 1.86222 1.43510 1.37290 1.44338 1.05259 1.17622 0.92866 0.99625 0.85259 1.20125 0.93664 1.10737 0.98096 1.20382 0.98005 1.01857 0.93067 1.17937 0.92825 1.10665 0.83644 1.91272 1.88624 1.84501 1.49765 1.17366 0.89277 0.90987 0.93028 1.19534 1.04161 1.15417 1.08987 0.89794 1.25890 0.98667 0.93439 0.96184 1.69787 1.26850 1.09908 1.35845 0.86145 0.79890 0.80051 0.80051 1.18252 1.19624 1.19818 1.20952 0.99006 1.06925 0.91536 0.92480 0.92330 0.92656 0.90287 0.92658 0.92756 0.92569 0.90122 0.90873 0.76982 0.76132 0.87131 0.87715 0.90805 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.96 37.16 0.33 -0.89 16 2 C -0.09 -0.78 2.86 -90.62 -0.26 -1.04 16 3 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 4 C -0.14 -1.40 4.33 -26.73 -0.12 -1.51 16 5 C 0.09 1.11 3.23 -27.88 -0.09 1.02 16 6 H 0.12 1.32 6.44 -51.93 -0.33 0.99 16 7 O -0.54 -6.78 12.36 -55.09 -0.68 -7.46 16 8 C 0.48 7.92 6.91 -10.98 -0.08 7.84 16 9 O -0.52 -10.68 13.96 -14.31 -0.20 -10.88 16 10 N -0.66 -11.48 5.26 -9.89 -0.05 -11.53 16 11 C 0.14 3.08 6.28 -83.74 -0.53 2.55 16 12 C -0.21 -4.69 8.66 -39.11 -0.34 -5.03 16 13 C -0.11 -2.66 10.00 -39.62 -0.40 -3.06 16 14 C -0.03 -0.78 7.31 -38.62 -0.28 -1.06 16 15 F -0.16 -4.14 16.73 2.25 0.04 -4.11 16 16 C 0.10 2.57 5.57 -106.78 -0.59 1.98 16 17 C -0.45 -11.90 8.77 -37.79 -0.33 -12.23 16 18 H 0.08 2.21 7.74 -52.49 -0.41 1.80 16 19 C 0.08 1.82 5.22 -17.33 -0.09 1.73 16 20 N -0.80 -19.25 10.83 55.55 0.60 -18.65 16 21 Si 0.91 18.19 29.58 -169.99 -5.03 13.16 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 C -0.16 -3.97 8.57 -38.71 -0.33 -4.30 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.49 6.52 -51.93 -0.34 0.15 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.71 7.62 -51.93 -0.40 0.31 16 30 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.77 8.00 -51.93 -0.42 0.35 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.38 4.04 8.79 45.56 0.40 4.44 16 36 H 0.40 5.81 8.72 -40.82 -0.36 5.45 16 37 H 0.11 2.45 6.36 -52.48 -0.33 2.12 16 38 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.28 6.10 8.30 -40.82 -0.34 5.76 16 40 H 0.13 3.23 6.15 -52.49 -0.32 2.91 16 LS Contribution 337.44 15.07 5.09 5.09 Total: -1.00 -29.85 337.44 -7.59 -37.44 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -4.60 Total: 11.74 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -2.76 Total: -14.80 kcal Atomic # 7 Polarization: -30.73 SS G_CDS: 0.55 Total: -30.18 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.88 Total: -18.34 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.04 Total: -4.11 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.85 -7.59 -37.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144182110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.761 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds