Wall clock time and date at job start Tue Mar 31 2020 07:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47267 * 2 1 4 4 C 1.52997 * 109.47367 * 240.00023 * 2 1 3 5 5 C 1.53005 * 109.46888 * 294.50838 * 4 2 1 6 6 H 1.08997 * 109.47082 * 56.93078 * 5 4 2 7 7 O 1.42904 * 109.46954 * 296.92484 * 5 4 2 8 8 C 1.50700 * 109.46877 * 176.93210 * 5 4 2 9 9 O 1.21285 * 120.00442 * 115.00245 * 8 5 4 10 10 N 1.34780 * 119.99623 * 294.99459 * 8 5 4 11 11 C 1.40005 * 119.99839 * 174.96783 * 10 8 5 12 12 C 1.39367 * 119.91423 * 327.03330 * 11 10 8 13 13 C 1.38367 * 120.47175 * 179.72005 * 12 11 10 14 14 C 1.38001 * 120.28760 * 0.54922 * 13 12 11 15 15 F 1.35096 * 120.09719 * 179.70656 * 14 13 12 16 16 C 1.41011 * 119.81181 * 359.72330 * 14 13 12 17 17 C 1.41293 * 120.22914 * 179.97438 * 16 14 13 18 18 H 1.08000 * 119.99993 * 26.72626 * 17 16 14 19 19 C 1.39926 * 120.00242 * 206.72805 * 17 16 14 20 20 N 1.30857 * 119.99787 * 13.12449 * 19 17 16 21 21 Si 1.86797 * 120.00185 * 193.13117 * 19 17 16 22 22 H 1.48501 * 109.47015 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47129 * 119.99764 * 21 19 17 24 24 H 1.48499 * 109.46951 * 239.99600 * 21 19 17 25 25 C 1.38151 * 119.90899 * 147.30002 * 11 10 8 26 26 H 1.09000 * 109.46850 * 59.99643 * 1 2 3 27 27 H 1.09000 * 109.47138 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46966 * 300.00369 * 1 2 3 29 29 H 1.09002 * 109.46744 * 119.99580 * 2 1 3 30 30 H 1.09008 * 109.46925 * 55.31146 * 3 2 1 31 31 H 1.08998 * 109.47434 * 175.31455 * 3 2 1 32 32 H 1.09000 * 109.46971 * 295.31605 * 3 2 1 33 33 H 1.08997 * 109.46871 * 54.50409 * 4 2 1 34 34 H 1.09000 * 109.47307 * 174.50600 * 4 2 1 35 35 H 0.96695 * 114.00448 * 300.00598 * 7 5 4 36 36 H 0.97000 * 120.00496 * 354.97078 * 10 8 5 37 37 H 1.08007 * 119.76346 * 359.97438 * 12 11 10 38 38 H 1.08000 * 119.85693 * 180.25059 * 13 12 11 39 39 H 0.97000 * 119.99780 * 180.02562 * 20 19 17 40 40 H 1.07995 * 120.14584 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6459 -2.1981 -1.1821 6 1 0.5642 -2.2810 -1.0767 7 8 2.2824 -2.8104 -0.0586 8 6 2.0822 -2.8924 -2.4465 9 8 2.9291 -3.7594 -2.4011 10 7 1.5310 -2.5499 -3.6278 11 6 2.0094 -3.1184 -4.8144 12 6 3.3589 -3.4452 -4.9338 13 6 3.8430 -4.0129 -6.0992 14 6 2.9951 -4.2514 -7.1615 15 9 3.4730 -4.8004 -8.2997 16 6 1.6285 -3.9202 -7.0559 17 6 0.7527 -4.1602 -8.1383 18 1 0.9718 -4.9457 -8.8464 19 6 -0.3986 -3.3801 -8.2930 20 7 -0.5387 -2.2767 -7.6036 21 14 -1.7356 -3.9138 -9.4834 22 1 -1.3379 -5.1872 -10.1358 23 1 -3.0072 -4.1125 -8.7428 24 1 -1.9240 -2.8656 -10.5183 25 6 1.1434 -3.3489 -5.8659 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6098 1.9800 0.8451 31 1 3.1268 1.4437 0.0839 32 1 1.7469 1.9315 -0.9290 33 1 1.5986 -0.2674 -2.1364 34 1 3.1256 -0.6368 -1.2997 35 1 3.2483 -2.7737 -0.0855 36 1 0.8030 -1.9095 -3.6559 37 1 4.0310 -3.2578 -4.1093 38 1 4.8898 -4.2659 -6.1795 39 1 -1.3370 -1.7361 -7.7105 40 1 0.0985 -3.0918 -5.7742 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144182110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:21 Heat of formation + Delta-G solvation = -154.314321 kcal Electronic energy + Delta-G solvation = -23600.940622 eV Core-core repulsion = 19907.176734 eV Total energy + Delta-G solvation = -3693.763888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.21465 -41.56035 -39.37230 -38.13281 -36.33522 -35.82632 -35.11173 -31.74027 -31.22330 -29.33604 -27.97507 -27.30926 -25.59212 -23.56652 -22.79576 -21.41655 -20.97399 -19.41036 -19.09234 -18.04150 -17.79155 -17.31654 -16.91187 -16.70445 -16.17937 -16.00348 -15.55785 -15.51476 -15.03125 -14.78256 -14.65090 -14.46794 -13.97243 -13.61478 -13.49968 -13.37134 -13.05486 -12.97117 -12.96817 -12.78929 -12.63096 -12.52177 -12.08600 -12.03544 -11.85351 -11.54477 -11.49365 -11.39537 -11.21288 -10.89593 -10.43362 -9.54012 -8.88332 -8.58548 -6.47518 0.57227 0.83896 1.39083 1.41999 1.53249 1.62308 2.10828 2.19894 2.64001 3.23956 3.45323 3.62760 3.79866 3.93446 4.00646 4.11180 4.21988 4.27405 4.48040 4.63195 4.78600 4.82372 4.89742 4.91719 4.95725 4.96954 5.00753 5.09737 5.13155 5.21961 5.34584 5.49135 5.56264 5.58058 5.70544 5.72792 5.95072 6.09367 6.39290 6.53640 6.66667 6.74315 6.80096 7.17050 8.25243 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016654 B = 0.004057 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.859111 B = 6899.444308 C = 8013.539363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.087 4.087 3 C -0.147 4.147 4 C -0.137 4.137 5 C 0.108 3.892 6 H 0.141 0.859 7 O -0.546 6.546 8 C 0.476 3.524 9 O -0.559 6.559 10 N -0.652 5.652 11 C 0.149 3.851 12 C -0.211 4.211 13 C -0.110 4.110 14 C -0.067 4.067 15 F -0.169 7.169 16 C 0.072 3.928 17 C -0.490 4.490 18 H 0.070 0.930 19 C 0.042 3.958 20 N -0.813 5.813 21 Si 0.985 3.015 22 H -0.267 1.267 23 H -0.256 1.256 24 H -0.262 1.262 25 C -0.176 4.176 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.390 0.610 36 H 0.420 0.580 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.294 0.706 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 8.722 13.035 15.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.106 4.106 3 C -0.205 4.205 4 C -0.176 4.176 5 C 0.046 3.954 6 H 0.159 0.841 7 O -0.351 6.351 8 C 0.265 3.735 9 O -0.437 6.437 10 N -0.298 5.298 11 C 0.055 3.945 12 C -0.232 4.232 13 C -0.129 4.129 14 C -0.088 4.088 15 F -0.149 7.149 16 C 0.068 3.932 17 C -0.519 4.519 18 H 0.088 0.912 19 C -0.174 4.174 20 N -0.439 5.439 21 Si 0.805 3.195 22 H -0.191 1.191 23 H -0.180 1.180 24 H -0.187 1.187 25 C -0.198 4.198 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.240 0.760 36 H 0.257 0.743 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.105 0.895 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.166 8.225 13.324 15.807 hybrid contribution 0.075 -0.117 -1.281 1.289 sum -2.090 8.108 12.042 14.667 Atomic orbital electron populations 1.21953 0.94690 1.02015 1.02505 1.20999 0.96356 0.96120 0.97078 1.21841 1.01028 0.95349 1.02245 1.22311 1.02436 0.92117 1.00691 1.21952 1.00130 0.91873 0.81478 0.84149 1.86542 1.25946 1.81417 1.41238 1.22564 0.81663 0.82920 0.86403 1.90699 1.33786 1.32391 1.86844 1.43490 1.37789 1.44354 1.04185 1.17669 0.92454 0.98050 0.86300 1.20327 0.94193 1.10652 0.98053 1.20647 0.98907 1.00862 0.92530 1.18208 0.93355 1.12798 0.84394 1.91232 1.88644 1.84802 1.50189 1.17745 0.89843 0.91614 0.93975 1.19685 1.06173 1.16449 1.09604 0.91219 1.26643 0.99912 0.93024 0.97817 1.69780 1.27798 1.10074 1.36200 0.85111 0.77108 0.79316 0.77949 1.19069 1.18043 1.18682 1.20919 0.99171 1.07937 0.91794 0.92106 0.92587 0.91918 0.90606 0.91818 0.92703 0.92585 0.89576 0.90965 0.76008 0.74252 0.86231 0.85526 0.89469 0.85183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.96 71.98 0.65 -1.42 16 2 C -0.09 -1.25 2.86 -10.79 -0.03 -1.28 16 3 C -0.15 -1.91 9.19 71.98 0.66 -1.25 16 4 C -0.14 -2.35 4.33 30.60 0.13 -2.22 16 5 C 0.11 2.36 3.23 29.85 0.10 2.45 16 6 H 0.14 2.62 6.44 -2.39 -0.02 2.61 16 7 O -0.55 -12.68 12.36 -129.99 -1.61 -14.28 16 8 C 0.48 15.15 6.91 87.66 0.61 15.76 16 9 O -0.56 -22.53 13.96 15.94 0.22 -22.30 16 10 N -0.65 -21.90 5.26 -303.60 -1.60 -23.50 16 11 C 0.15 6.60 6.28 38.09 0.24 6.83 16 12 C -0.21 -9.62 8.66 22.57 0.20 -9.43 16 13 C -0.11 -5.20 10.00 22.24 0.22 -4.98 16 14 C -0.07 -3.55 7.31 22.89 0.17 -3.38 16 15 F -0.17 -8.95 16.73 44.97 0.75 -8.20 16 16 C 0.07 3.92 5.57 -21.26 -0.12 3.80 16 17 C -0.49 -26.59 8.77 23.43 0.21 -26.39 16 18 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 19 C 0.04 2.04 5.22 85.25 0.45 2.48 16 20 N -0.81 -38.86 10.83 21.82 0.24 -38.62 16 21 Si 0.98 36.86 29.58 68.60 2.03 38.89 16 22 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 24 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 25 C -0.18 -8.73 8.57 22.84 0.20 -8.53 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.78 6.52 -2.39 -0.02 0.76 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 1.17 7.62 -2.39 -0.02 1.15 16 30 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 1.41 8.00 -2.39 -0.02 1.39 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.39 7.63 8.79 -74.06 -0.65 6.98 16 36 H 0.42 11.34 8.72 -92.71 -0.81 10.54 16 37 H 0.12 5.22 6.36 -2.91 -0.02 5.20 16 38 H 0.13 5.27 8.06 -2.91 -0.02 5.24 16 39 H 0.29 12.38 8.30 -92.71 -0.77 11.61 16 40 H 0.13 6.39 6.15 -2.91 -0.02 6.37 16 Total: -1.00 -64.76 337.44 3.33 -61.43 By element: Atomic # 1 Polarization: 34.51 SS G_CDS: -0.37 Total: 34.14 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 3.66 Total: -27.56 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -1.36 Total: -62.12 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -1.38 Total: -36.59 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 0.75 Total: -8.20 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Total: -64.76 3.33 -61.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144182110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.880 kcal (2) G-P(sol) polarization free energy of solvation -64.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds