Wall clock time and date at job start Tue Mar 31 2020 07:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47242 * 2 1 4 4 C 1.52999 * 109.47242 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47534 * 180.02562 * 4 3 2 6 6 C 1.37098 * 119.99814 * 264.54449 * 5 4 3 7 7 H 1.08000 * 120.00352 * 146.01659 * 6 5 4 8 8 C 1.38954 * 119.99857 * 326.00381 * 6 5 4 9 9 N 1.31406 * 120.00031 * 337.81642 * 8 6 5 10 10 Si 1.86801 * 119.99842 * 157.81246 * 8 6 5 11 11 H 1.48501 * 109.47001 * 90.00268 * 10 8 6 12 12 H 1.48498 * 109.47124 * 210.00440 * 10 8 6 13 13 H 1.48504 * 109.46885 * 330.00420 * 10 8 6 14 14 C 1.34780 * 120.00097 * 84.53605 * 5 4 3 15 15 O 1.21291 * 119.99810 * 0.02562 * 14 5 4 16 16 C 1.50694 * 120.00050 * 180.27677 * 14 5 4 17 17 C 1.50696 * 109.47313 * 179.72517 * 16 14 5 18 18 C 1.38258 * 119.94053 * 269.72765 * 17 16 14 19 19 C 1.38182 * 120.09556 * 179.76650 * 18 17 16 20 20 C 1.38657 * 119.96970 * 0.50723 * 19 18 17 21 21 O 1.35955 * 120.06557 * 179.72498 * 20 19 18 22 22 C 1.38912 * 119.87491 * 359.74329 * 20 19 18 23 23 F 1.35097 * 120.04587 * 179.97438 * 22 20 19 24 24 C 1.38261 * 119.93503 * 90.00393 * 17 16 14 25 25 H 1.09002 * 109.46793 * 59.99680 * 1 2 3 26 26 H 1.09000 * 109.47720 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47231 * 299.99860 * 1 2 3 28 28 H 1.09001 * 109.46588 * 239.99888 * 2 1 3 29 29 H 1.09002 * 109.46793 * 120.00320 * 2 1 3 30 30 H 1.08998 * 109.46937 * 60.00244 * 3 2 1 31 31 H 1.09001 * 109.46974 * 299.99993 * 3 2 1 32 32 H 1.09004 * 109.47118 * 59.99369 * 4 3 2 33 33 H 1.09002 * 109.46793 * 300.00320 * 4 3 2 34 34 H 0.97005 * 120.00038 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47100 * 299.73130 * 16 14 5 36 36 H 1.09003 * 109.46836 * 59.72264 * 16 14 5 37 37 H 1.08001 * 119.95143 * 0.02562 * 18 17 16 38 38 H 1.08001 * 120.01227 * 180.24951 * 19 18 17 39 39 H 0.96701 * 114.00183 * 270.02301 * 21 20 19 40 40 H 1.07999 * 119.98698 * 359.95041 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.3939 3.4325 -1.1804 7 1 4.2244 4.4913 -1.3094 8 6 4.9522 2.6875 -2.2119 9 7 5.5557 1.5503 -1.9489 10 14 4.8446 3.3026 -3.9725 11 1 6.0282 4.1468 -4.2750 12 1 4.8128 2.1438 -4.9005 13 1 3.6072 4.1061 -4.1413 14 6 4.1778 3.4957 1.1634 15 8 3.8813 2.9568 2.2088 16 6 4.6743 4.9185 1.1635 17 6 4.7085 5.4386 2.5774 18 6 3.6004 6.0746 3.1057 19 6 3.6266 6.5485 4.4034 20 6 4.7693 6.3955 5.1738 21 8 4.7991 6.8659 6.4490 22 6 5.8837 5.7609 4.6401 23 9 6.9991 5.6104 5.3874 24 6 5.8500 5.2839 3.3420 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9284 -0.8891 33 1 3.9329 0.9287 0.8909 34 1 5.9458 1.0303 -2.6690 35 1 5.6778 4.9531 0.7391 36 1 4.0053 5.5367 0.5649 37 1 2.7116 6.1975 2.5046 38 1 2.7588 7.0415 4.8161 39 1 5.1092 7.7787 6.5243 40 1 6.7156 4.7900 2.9259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144629028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:00 Heat of formation + Delta-G solvation = -112.704479 kcal Electronic energy + Delta-G solvation = -23600.878472 eV Core-core repulsion = 19908.918922 eV Total energy + Delta-G solvation = -3691.959550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.67758 -39.58670 -38.51921 -36.80448 -35.27207 -33.96864 -31.66407 -31.46231 -30.42067 -28.62984 -26.48004 -24.92495 -23.00327 -22.72160 -21.44351 -20.40451 -19.12658 -18.51329 -17.16024 -16.54946 -16.39741 -15.95247 -15.77394 -14.99956 -14.80629 -14.64409 -14.27981 -14.07723 -13.82005 -13.72475 -13.20974 -13.04238 -12.80630 -12.30715 -12.19845 -12.02604 -11.64243 -11.42975 -11.33069 -11.25494 -11.17512 -10.85408 -10.60619 -10.51755 -10.46373 -10.37052 -10.23518 -9.74100 -9.14142 -8.74559 -8.55437 -8.18239 -7.57673 -6.44799 -4.11542 1.25556 1.37297 3.05233 3.16789 3.19770 3.63437 3.85103 4.04106 4.08228 4.46995 4.72506 4.92954 4.94697 5.11944 5.41389 5.48060 5.48958 5.53393 5.65761 5.84088 5.95766 6.05826 6.14024 6.18287 6.23743 6.24353 6.31623 6.36594 6.39105 6.45392 6.59879 6.72287 6.81356 6.83494 6.91938 7.11498 7.31038 7.45332 7.61281 7.86530 8.30686 9.01027 9.46492 9.90174 10.56188 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.004332 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.306906 B = 6461.342486 C = 7591.249971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.115 3.885 5 N -0.436 5.436 6 C -0.344 4.344 7 H 0.091 0.909 8 C 0.045 3.955 9 N -0.855 5.855 10 Si 0.911 3.089 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.268 1.268 14 C 0.469 3.531 15 O -0.599 6.599 16 C -0.089 4.089 17 C -0.019 4.019 18 C -0.104 4.104 19 C -0.116 4.116 20 C 0.055 3.945 21 O -0.490 6.490 22 C 0.074 3.926 23 F -0.139 7.139 24 C -0.127 4.127 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.270 0.730 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.385 0.615 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.337 7.620 4.438 9.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.166 4.166 4 C -0.008 4.008 5 N -0.154 5.154 6 C -0.472 4.472 7 H 0.108 0.892 8 C -0.161 4.161 9 N -0.491 5.491 10 Si 0.737 3.263 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.258 3.742 15 O -0.485 6.485 16 C -0.129 4.129 17 C -0.020 4.020 18 C -0.122 4.122 19 C -0.135 4.135 20 C 0.010 3.990 21 O -0.299 6.299 22 C 0.054 3.946 23 F -0.117 7.117 24 C -0.146 4.146 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.149 0.851 38 H 0.152 0.848 39 H 0.239 0.761 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.541 6.601 4.991 9.002 hybrid contribution 0.428 0.623 -0.984 1.241 sum -3.113 7.225 4.007 8.829 Atomic orbital electron populations 1.21757 0.96650 1.00675 1.01450 1.21427 0.94964 0.97775 1.01586 1.21901 0.97944 0.95497 1.01287 1.21428 0.91055 0.84800 1.03545 1.43468 1.55072 1.12027 1.04843 1.19420 1.41663 0.95412 0.90670 0.89172 1.25316 0.94139 0.96281 1.00398 1.69943 1.31005 1.14900 1.33253 0.86200 0.78997 0.78631 0.82464 1.20213 1.20688 1.19300 1.20128 0.82064 0.88145 0.83891 1.90568 1.55593 1.70617 1.31703 1.20515 1.04428 0.96074 0.91861 1.19520 0.92247 0.94117 0.96070 1.20962 0.98194 0.98192 0.94853 1.21187 0.97379 1.01240 0.93647 1.18334 0.93028 1.02311 0.85334 1.84894 1.88730 1.33590 1.22713 1.18031 0.82951 1.03463 0.90167 1.91461 1.50186 1.93985 1.76090 1.20974 1.00405 1.01118 0.92130 0.93067 0.93431 0.93083 0.92287 0.92414 0.92840 0.92421 0.87565 0.93110 0.91941 0.88200 0.88870 0.85137 0.84808 0.76061 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.12 -2.00 5.93 -26.73 -0.16 -2.16 16 3 C -0.13 -2.56 5.50 -26.73 -0.15 -2.71 16 4 C 0.12 2.69 4.90 -4.04 -0.02 2.67 16 5 N -0.44 -10.52 2.56 -114.81 -0.29 -10.82 16 6 C -0.34 -8.21 8.71 -14.93 -0.13 -8.34 16 7 H 0.09 2.01 6.97 -52.49 -0.37 1.64 16 8 C 0.05 1.08 4.92 -17.47 -0.09 1.00 16 9 N -0.85 -21.72 11.34 55.50 0.63 -21.09 16 10 Si 0.91 18.48 29.61 -169.99 -5.03 13.44 16 11 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 12 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 14 C 0.47 10.91 7.59 -10.99 -0.08 10.83 16 15 O -0.60 -15.46 15.70 5.55 0.09 -15.37 16 16 C -0.09 -1.65 4.48 -29.04 -0.13 -1.78 16 17 C -0.02 -0.32 4.37 -104.61 -0.46 -0.78 16 18 C -0.10 -1.57 9.69 -39.59 -0.38 -1.96 16 19 C -0.12 -1.61 9.98 -39.45 -0.39 -2.00 16 20 C 0.06 0.82 6.71 -39.18 -0.26 0.56 16 21 O -0.49 -6.40 13.37 -19.60 -0.26 -6.66 16 22 C 0.07 1.21 7.31 -39.30 -0.29 0.93 16 23 F -0.14 -2.31 17.11 2.25 0.04 -2.27 16 24 C -0.13 -2.18 9.67 -39.54 -0.38 -2.56 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.11 2.63 5.36 -51.93 -0.28 2.35 16 33 H 0.05 1.25 7.59 -51.93 -0.39 0.86 16 34 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 35 H 0.10 1.81 8.04 -51.93 -0.42 1.40 16 36 H 0.09 1.55 7.58 -51.93 -0.39 1.15 16 37 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.38 2.93 9.06 45.56 0.41 3.34 16 40 H 0.14 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -29.73 344.77 -6.99 -36.72 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -4.80 Total: 8.88 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -2.55 Total: -8.03 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.34 Total: -31.91 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.17 Total: -22.04 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.73 -6.99 -36.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144629028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.986 kcal (2) G-P(sol) polarization free energy of solvation -29.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds