Wall clock time and date at job start Tue Mar 31 2020 07:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47242 * 2 1 4 4 C 1.52999 * 109.47242 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47534 * 180.02562 * 4 3 2 6 6 C 1.37098 * 119.99814 * 264.54449 * 5 4 3 7 7 H 1.08000 * 120.00352 * 146.01659 * 6 5 4 8 8 C 1.38954 * 119.99857 * 326.00381 * 6 5 4 9 9 N 1.31406 * 120.00031 * 337.81642 * 8 6 5 10 10 Si 1.86801 * 119.99842 * 157.81246 * 8 6 5 11 11 H 1.48501 * 109.47001 * 90.00268 * 10 8 6 12 12 H 1.48498 * 109.47124 * 210.00440 * 10 8 6 13 13 H 1.48504 * 109.46885 * 330.00420 * 10 8 6 14 14 C 1.34780 * 120.00097 * 84.53605 * 5 4 3 15 15 O 1.21291 * 119.99810 * 0.02562 * 14 5 4 16 16 C 1.50694 * 120.00050 * 180.27677 * 14 5 4 17 17 C 1.50696 * 109.47313 * 179.72517 * 16 14 5 18 18 C 1.38258 * 119.94053 * 269.72765 * 17 16 14 19 19 C 1.38182 * 120.09556 * 179.76650 * 18 17 16 20 20 C 1.38657 * 119.96970 * 0.50723 * 19 18 17 21 21 O 1.35955 * 120.06557 * 179.72498 * 20 19 18 22 22 C 1.38912 * 119.87491 * 359.74329 * 20 19 18 23 23 F 1.35097 * 120.04587 * 179.97438 * 22 20 19 24 24 C 1.38261 * 119.93503 * 90.00393 * 17 16 14 25 25 H 1.09002 * 109.46793 * 59.99680 * 1 2 3 26 26 H 1.09000 * 109.47720 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47231 * 299.99860 * 1 2 3 28 28 H 1.09001 * 109.46588 * 239.99888 * 2 1 3 29 29 H 1.09002 * 109.46793 * 120.00320 * 2 1 3 30 30 H 1.08998 * 109.46937 * 60.00244 * 3 2 1 31 31 H 1.09001 * 109.46974 * 299.99993 * 3 2 1 32 32 H 1.09004 * 109.47118 * 59.99369 * 4 3 2 33 33 H 1.09002 * 109.46793 * 300.00320 * 4 3 2 34 34 H 0.97005 * 120.00038 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47100 * 299.73130 * 16 14 5 36 36 H 1.09003 * 109.46836 * 59.72264 * 16 14 5 37 37 H 1.08001 * 119.95143 * 0.02562 * 18 17 16 38 38 H 1.08001 * 120.01227 * 180.24951 * 19 18 17 39 39 H 0.96701 * 114.00183 * 270.02301 * 21 20 19 40 40 H 1.07999 * 119.98698 * 359.95041 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.3939 3.4325 -1.1804 7 1 4.2244 4.4913 -1.3094 8 6 4.9522 2.6875 -2.2119 9 7 5.5557 1.5503 -1.9489 10 14 4.8446 3.3026 -3.9725 11 1 6.0282 4.1468 -4.2750 12 1 4.8128 2.1438 -4.9005 13 1 3.6072 4.1061 -4.1413 14 6 4.1778 3.4957 1.1634 15 8 3.8813 2.9568 2.2088 16 6 4.6743 4.9185 1.1635 17 6 4.7085 5.4386 2.5774 18 6 3.6004 6.0746 3.1057 19 6 3.6266 6.5485 4.4034 20 6 4.7693 6.3955 5.1738 21 8 4.7991 6.8659 6.4490 22 6 5.8837 5.7609 4.6401 23 9 6.9991 5.6104 5.3874 24 6 5.8500 5.2839 3.3420 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9284 -0.8891 33 1 3.9329 0.9287 0.8909 34 1 5.9458 1.0303 -2.6690 35 1 5.6778 4.9531 0.7391 36 1 4.0053 5.5367 0.5649 37 1 2.7116 6.1975 2.5046 38 1 2.7588 7.0415 4.8161 39 1 5.1092 7.7787 6.5243 40 1 6.7156 4.7900 2.9259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144629028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:59 Heat of formation + Delta-G solvation = -129.843771 kcal Electronic energy + Delta-G solvation = -23601.621688 eV Core-core repulsion = 19908.918922 eV Total energy + Delta-G solvation = -3692.702766 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.94875 -40.97127 -40.08121 -38.01652 -36.98309 -35.55762 -33.43410 -32.88821 -31.63679 -30.13562 -27.88389 -26.72756 -24.47594 -23.95131 -22.75257 -21.92842 -20.94497 -19.61308 -18.78264 -17.94711 -17.76466 -17.61032 -17.00775 -16.59598 -16.23286 -16.07751 -15.90793 -15.73940 -15.06789 -14.92059 -14.55120 -14.50452 -14.34224 -13.81920 -13.59169 -13.44669 -13.10806 -13.00119 -12.81649 -12.68436 -12.57077 -12.45010 -12.14766 -12.01799 -11.93707 -11.78587 -11.60240 -11.41556 -10.95967 -10.38859 -9.91022 -9.50551 -9.43185 -8.28126 -6.00951 0.04761 0.16739 1.44284 1.52311 1.62744 2.05913 2.32415 2.44070 2.94413 3.04634 3.18734 3.32064 3.70002 3.84765 4.08078 4.15549 4.24631 4.24958 4.31391 4.45728 4.57142 4.62048 4.72879 4.85605 4.89695 4.90804 4.98142 5.00406 5.05077 5.09821 5.17566 5.19250 5.37285 5.44193 5.48684 5.54259 5.60233 5.77310 6.03540 6.45100 6.73268 7.15563 7.62749 8.06739 8.74245 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.004332 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.306906 B = 6461.342486 C = 7591.249971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.113 4.113 4 C 0.116 3.884 5 N -0.449 5.449 6 C -0.356 4.356 7 H 0.107 0.893 8 C 0.003 3.997 9 N -0.892 5.892 10 Si 0.980 3.020 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.258 1.258 14 C 0.457 3.543 15 O -0.631 6.631 16 C -0.077 4.077 17 C -0.040 4.040 18 C -0.102 4.102 19 C -0.108 4.108 20 C 0.066 3.934 21 O -0.497 6.497 22 C 0.053 3.947 23 F -0.145 7.145 24 C -0.141 4.141 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.023 0.977 34 H 0.271 0.729 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.150 0.850 38 H 0.169 0.831 39 H 0.411 0.589 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.011 9.256 4.080 11.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C -0.152 4.152 4 C -0.008 4.008 5 N -0.167 5.167 6 C -0.483 4.483 7 H 0.124 0.876 8 C -0.200 4.200 9 N -0.529 5.529 10 Si 0.804 3.196 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.182 1.182 14 C 0.247 3.753 15 O -0.520 6.520 16 C -0.116 4.116 17 C -0.041 4.041 18 C -0.120 4.120 19 C -0.126 4.126 20 C 0.020 3.980 21 O -0.309 6.309 22 C 0.033 3.967 23 F -0.124 7.124 24 C -0.160 4.160 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.133 0.867 37 H 0.168 0.832 38 H 0.187 0.813 39 H 0.270 0.730 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.210 8.271 4.637 10.820 hybrid contribution 0.990 0.124 -0.752 1.249 sum -4.220 8.395 3.885 10.168 Atomic orbital electron populations 1.21706 0.94042 1.02320 1.01846 1.21414 0.97208 0.95347 1.01525 1.21753 0.95350 0.97648 1.00454 1.21370 0.93273 0.84763 1.01371 1.43755 1.55231 1.12177 1.05517 1.19838 1.41576 0.96274 0.90625 0.87583 1.26162 0.93461 0.96310 1.04029 1.70056 1.32147 1.16343 1.34391 0.85142 0.79301 0.77896 0.77308 1.19746 1.21121 1.18198 1.20923 0.81338 0.89917 0.83098 1.90529 1.56903 1.71847 1.32688 1.20401 1.04414 0.93251 0.93582 1.19482 0.93281 0.95820 0.95526 1.21231 0.97937 0.97148 0.95696 1.21509 0.97936 1.00351 0.92836 1.18445 0.92567 1.01221 0.85774 1.84825 1.88825 1.35775 1.21525 1.18222 0.83610 1.04709 0.90170 1.91436 1.50629 1.94188 1.76121 1.20999 1.00511 1.01719 0.92820 0.92389 0.91192 0.92972 0.92093 0.92797 0.94134 0.92451 0.88972 0.95799 0.91919 0.88374 0.86682 0.83234 0.81349 0.73025 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.91 71.98 0.71 -3.02 16 2 C -0.12 -3.88 5.93 30.59 0.18 -3.70 16 3 C -0.11 -4.60 5.50 30.59 0.17 -4.43 16 4 C 0.12 5.62 4.90 86.38 0.42 6.04 16 5 N -0.45 -22.10 2.56 -635.54 -1.63 -23.72 16 6 C -0.36 -16.94 8.71 84.04 0.73 -16.21 16 7 H 0.11 4.60 6.97 -2.91 -0.02 4.58 16 8 C 0.00 0.16 4.92 84.93 0.42 0.58 16 9 N -0.89 -46.20 11.34 21.66 0.25 -45.95 16 10 Si 0.98 37.36 29.61 68.60 2.03 39.39 16 11 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 12 H -0.29 -11.00 7.11 99.48 0.71 -10.29 16 13 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 14 C 0.46 21.65 7.59 87.65 0.67 22.31 16 15 O -0.63 -33.50 15.70 -3.06 -0.05 -33.55 16 16 C -0.08 -2.85 4.48 29.10 0.13 -2.72 16 17 C -0.04 -1.37 4.37 -19.86 -0.09 -1.46 16 18 C -0.10 -2.89 9.69 22.26 0.22 -2.68 16 19 C -0.11 -2.69 9.98 22.36 0.22 -2.46 16 20 C 0.07 1.83 6.71 22.53 0.15 1.98 16 21 O -0.50 -11.65 13.37 -93.05 -1.24 -12.90 16 22 C 0.05 1.71 7.31 22.45 0.16 1.88 16 23 F -0.14 -4.84 17.11 44.97 0.77 -4.08 16 24 C -0.14 -4.91 9.67 22.30 0.22 -4.69 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.09 4.73 5.36 -2.38 -0.01 4.72 16 33 H 0.02 1.24 7.59 -2.39 -0.02 1.22 16 34 H 0.27 13.26 8.31 -92.70 -0.77 12.49 16 35 H 0.10 3.61 8.04 -2.39 -0.02 3.59 16 36 H 0.12 3.66 7.58 -2.39 -0.02 3.65 16 37 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 38 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.41 5.00 9.06 -74.06 -0.67 4.33 16 40 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -64.95 344.77 4.83 -60.12 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: 0.38 Total: 29.27 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 4.31 Total: -8.59 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -1.38 Total: -69.67 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -1.29 Total: -46.45 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.77 Total: -4.08 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Total: -64.95 4.83 -60.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144629028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.725 kcal (2) G-P(sol) polarization free energy of solvation -64.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds