Wall clock time and date at job start Tue Mar 31 2020 06:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47397 * 2 1 4 4 O 1.42968 * 109.47536 * 120.00496 * 2 1 3 5 5 C 1.43095 * 113.77024 * 61.19888 * 4 2 1 6 6 C 1.53256 * 108.93859 * 57.97702 * 5 4 2 7 7 N 1.46501 * 109.57409 * 185.53762 * 6 5 4 8 8 C 1.38806 * 120.00141 * 204.74629 * 7 6 5 9 9 C 1.38625 * 120.21389 * 359.72213 * 8 7 6 10 10 C 1.38229 * 120.21544 * 179.69826 * 9 8 7 11 11 C 1.38798 * 120.66013 * 0.60627 * 10 9 8 12 12 C 1.37738 * 120.42612 * 359.67525 * 11 10 9 13 13 F 1.35102 * 120.11429 * 180.02562 * 12 11 10 14 14 C 1.40989 * 119.76711 * 0.02562 * 12 11 10 15 15 C 1.40996 * 120.31766 * 179.97438 * 14 12 11 16 16 H 1.08002 * 120.00000 * 214.55424 * 15 14 12 17 17 C 1.39909 * 120.00326 * 34.55731 * 15 14 12 18 18 N 1.30903 * 120.00655 * 210.10127 * 17 15 14 19 19 Si 1.86803 * 119.99745 * 30.10293 * 17 15 14 20 20 H 1.48500 * 109.47509 * 95.28943 * 19 17 15 21 21 H 1.48508 * 109.47081 * 215.28677 * 19 17 15 22 22 H 1.48505 * 109.47283 * 335.28436 * 19 17 15 23 23 C 1.53258 * 108.95334 * 305.40965 * 6 5 4 24 24 O 1.42971 * 109.47304 * 240.00259 * 2 1 3 25 25 H 1.08998 * 109.46897 * 299.99938 * 1 2 3 26 26 H 1.08992 * 109.47232 * 59.99649 * 1 2 3 27 27 H 1.09003 * 109.47005 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47339 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47216 * 300.00360 * 3 2 1 30 30 H 1.09004 * 109.46709 * 59.99892 * 3 2 1 31 31 H 1.09000 * 109.56151 * 298.13724 * 5 4 2 32 32 H 1.08999 * 109.55421 * 177.81296 * 5 4 2 33 33 H 1.08998 * 109.57890 * 65.28442 * 6 5 4 34 34 H 0.97005 * 119.99972 * 24.74226 * 7 6 5 35 35 H 1.07996 * 119.89365 * 0.02562 * 9 8 7 36 36 H 1.08004 * 119.67241 * 180.30148 * 10 9 8 37 37 H 1.07999 * 119.78108 * 179.69943 * 11 10 9 38 38 H 0.96994 * 120.00713 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.56059 * 174.42894 * 23 6 5 40 40 H 1.09003 * 109.56025 * 294.75468 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0066 -0.6740 1.1672 5 6 1.6041 -2.0449 1.2464 6 6 2.1043 -2.7830 -0.0001 7 7 1.5886 -4.1542 0.0014 8 6 2.2659 -5.1512 -0.6870 9 6 3.4276 -4.8533 -1.3822 10 6 4.1055 -5.8474 -2.0626 11 6 3.6290 -7.1509 -2.0707 12 6 2.4742 -7.4757 -1.3938 13 9 2.0163 -8.7467 -1.4055 14 6 1.7718 -6.4772 -0.6887 15 6 0.5882 -6.7967 0.0078 16 1 -0.2162 -6.0781 0.0635 17 6 0.4557 -8.0444 0.6267 18 7 -0.7267 -8.5929 0.7477 19 14 1.9663 -8.9277 1.2804 20 1 2.1267 -8.6304 2.7264 21 1 1.8042 -10.3918 1.0911 22 1 3.1690 -8.4635 0.5432 23 6 1.6041 -2.0476 -1.2482 24 8 2.0066 -0.6739 -1.1674 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.5167 -2.1039 1.2937 32 1 2.0349 -2.5007 2.1379 33 1 3.1941 -2.8028 -0.0001 34 1 0.7737 -4.3654 0.4835 35 1 3.8071 -3.8422 -1.3878 36 1 5.0124 -5.6064 -2.5973 37 1 4.1674 -7.9155 -2.6110 38 1 -0.8186 -9.4577 1.1771 39 1 2.0348 -2.5055 -2.1387 40 1 0.5167 -2.1066 -1.2953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168908506.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:26 Heat of formation + Delta-G solvation = -108.077309 kcal Electronic energy + Delta-G solvation = -24573.419763 eV Core-core repulsion = 20881.660862 eV Total energy + Delta-G solvation = -3691.758901 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -47.59322 -40.44504 -38.10068 -35.66559 -35.15263 -33.62283 -32.32848 -30.60684 -29.46339 -27.81338 -27.00268 -25.96888 -24.97505 -22.67561 -21.18839 -20.49103 -19.57246 -17.82356 -17.68517 -16.78361 -16.52661 -15.72618 -15.51930 -15.41624 -14.92034 -14.56254 -14.32255 -14.11686 -13.96662 -13.36185 -13.09793 -12.88329 -12.81973 -12.73114 -12.36183 -12.34311 -12.13077 -11.91280 -11.75673 -11.58101 -11.25853 -11.01376 -10.97151 -10.90589 -10.30686 -10.19042 -10.05749 -9.61937 -9.52552 -9.16016 -8.98236 -7.53188 -6.97351 -6.67102 -4.34388 2.47586 2.64865 3.20735 3.26975 3.35828 3.48905 3.57034 4.08072 4.19589 4.45980 4.58457 4.72416 4.80124 4.88221 5.11832 5.24193 5.29486 5.44395 5.47109 5.49882 5.56413 5.70758 5.74255 5.80597 5.95152 5.97052 6.01645 6.13038 6.19889 6.29701 6.67688 6.77326 7.01296 7.14308 7.18228 7.20011 7.45958 7.63608 7.91844 8.08628 8.26982 8.54069 8.65706 8.78594 10.03433 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022956 B = 0.004631 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.411995 B = 6044.925768 C = 6706.761777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.262 3.738 3 C -0.127 4.127 4 O -0.383 6.383 5 C 0.051 3.949 6 C 0.098 3.902 7 N -0.731 5.731 8 C 0.145 3.855 9 C -0.180 4.180 10 C -0.171 4.171 11 C -0.156 4.156 12 C 0.003 3.997 13 F -0.150 7.150 14 C 0.027 3.973 15 C -0.470 4.470 16 H 0.089 0.911 17 C 0.097 3.903 18 N -0.793 5.793 19 Si 0.914 3.086 20 H -0.292 1.292 21 H -0.281 1.281 22 H -0.245 1.245 23 C 0.039 3.961 24 O -0.387 6.387 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.402 0.598 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.284 0.716 39 H 0.104 0.896 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.784 13.694 0.259 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C 0.185 3.815 3 C -0.184 4.184 4 O -0.303 6.303 5 C -0.026 4.026 6 C -0.010 4.010 7 N -0.367 5.367 8 C 0.045 3.955 9 C -0.203 4.203 10 C -0.191 4.191 11 C -0.176 4.176 12 C -0.019 4.019 13 F -0.130 7.130 14 C 0.021 3.979 15 C -0.497 4.497 16 H 0.107 0.893 17 C -0.124 4.124 18 N -0.416 5.416 19 Si 0.740 3.260 20 H -0.220 1.220 21 H -0.206 1.206 22 H -0.169 1.169 23 C -0.039 4.039 24 O -0.307 6.307 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.239 0.761 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.859 13.828 0.304 14.124 hybrid contribution -0.280 -1.243 0.457 1.354 sum 2.579 12.584 0.762 12.869 Atomic orbital electron populations 1.22845 0.96252 1.03677 1.03695 1.22746 0.91188 0.91129 0.76393 1.21585 1.02944 0.90833 1.03000 1.88141 1.76152 1.23121 1.42883 1.22904 0.99659 0.81284 0.98798 1.21792 1.00557 0.83885 0.94762 1.43800 1.30054 1.04042 1.58838 1.17511 0.92663 0.88574 0.96766 1.20211 0.97366 0.98408 1.04343 1.19965 1.01118 0.92162 1.05842 1.20419 0.96807 0.96971 1.03422 1.17309 0.98780 0.79670 1.06096 1.91016 1.89303 1.37579 1.95063 1.17192 0.94569 0.89567 0.96532 1.18813 0.99766 1.00322 1.30841 0.89335 1.26086 0.97377 0.95900 0.93024 1.69820 1.25943 1.15377 1.30453 0.86218 0.84318 0.78301 0.77138 1.22047 1.20615 1.16862 1.23411 0.99756 0.80472 1.00243 1.88170 1.76093 1.23921 1.42496 0.90658 0.90590 0.91386 0.90917 0.90379 0.90443 0.92253 0.87705 0.89143 0.76150 0.88109 0.88095 0.88073 0.90562 0.87807 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.18 8.11 37.16 0.30 -1.88 16 2 C 0.26 3.23 1.50 -26.73 -0.04 3.19 16 3 C -0.13 -1.22 9.21 37.16 0.34 -0.88 16 4 O -0.38 -5.27 10.35 -59.03 -0.61 -5.88 16 5 C 0.05 0.68 6.07 37.29 0.23 0.91 16 6 C 0.10 1.50 2.53 -67.66 -0.17 1.32 16 7 N -0.73 -13.22 5.16 -51.51 -0.27 -13.49 16 8 C 0.14 3.10 6.66 -83.32 -0.56 2.54 16 9 C -0.18 -3.60 8.88 -39.44 -0.35 -3.95 16 10 C -0.17 -3.44 10.03 -39.38 -0.40 -3.84 16 11 C -0.16 -3.43 9.99 -39.56 -0.40 -3.82 16 12 C 0.00 0.07 5.05 -38.72 -0.20 -0.13 16 13 F -0.15 -3.87 12.82 2.25 0.03 -3.85 16 14 C 0.03 0.67 4.89 -106.57 -0.52 0.15 16 15 C -0.47 -12.16 8.64 -37.91 -0.33 -12.49 16 16 H 0.09 2.32 7.20 -52.49 -0.38 1.94 16 17 C 0.10 2.55 4.70 -17.32 -0.08 2.47 16 18 N -0.79 -21.12 13.93 55.55 0.77 -20.35 16 19 Si 0.91 21.79 25.30 -169.99 -4.30 17.49 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.24 -6.02 5.49 56.52 0.31 -5.71 16 23 C 0.04 0.57 6.14 37.29 0.23 0.80 16 24 O -0.39 -5.55 10.36 -59.03 -0.61 -6.17 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.77 5.12 -51.93 -0.27 0.50 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.74 6.53 -51.93 -0.34 0.40 16 32 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.09 1.47 6.49 -51.93 -0.34 1.13 16 34 H 0.40 7.33 7.00 -40.82 -0.29 7.05 16 35 H 0.10 1.80 6.01 -52.49 -0.32 1.48 16 36 H 0.10 1.75 8.06 -52.48 -0.42 1.32 16 37 H 0.10 2.01 8.06 -52.49 -0.42 1.58 16 38 H 0.28 6.94 8.30 -40.82 -0.34 6.61 16 39 H 0.10 1.59 7.67 -51.93 -0.40 1.20 16 40 H 0.06 0.82 6.54 -51.93 -0.34 0.48 16 LS Contribution 315.87 15.07 4.76 4.76 Total: -1.00 -28.00 315.87 -7.43 -35.43 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.27 Total: 7.65 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -1.93 Total: -15.60 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.51 Total: -33.83 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: -1.22 Total: -12.05 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.03 Total: -3.85 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.30 Total: 17.49 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.00 -7.43 -35.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168908506.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.652 kcal (2) G-P(sol) polarization free energy of solvation -27.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds