Wall clock time and date at job start Tue Mar 31 2020 06:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47397 * 2 1 4 4 O 1.42968 * 109.47536 * 120.00496 * 2 1 3 5 5 C 1.43095 * 113.77024 * 61.19888 * 4 2 1 6 6 C 1.53256 * 108.93859 * 57.97702 * 5 4 2 7 7 N 1.46501 * 109.57409 * 185.53762 * 6 5 4 8 8 C 1.38806 * 120.00141 * 204.74629 * 7 6 5 9 9 C 1.38625 * 120.21389 * 359.72213 * 8 7 6 10 10 C 1.38229 * 120.21544 * 179.69826 * 9 8 7 11 11 C 1.38798 * 120.66013 * 0.60627 * 10 9 8 12 12 C 1.37738 * 120.42612 * 359.67525 * 11 10 9 13 13 F 1.35102 * 120.11429 * 180.02562 * 12 11 10 14 14 C 1.40989 * 119.76711 * 0.02562 * 12 11 10 15 15 C 1.40996 * 120.31766 * 179.97438 * 14 12 11 16 16 H 1.08002 * 120.00000 * 214.55424 * 15 14 12 17 17 C 1.39909 * 120.00326 * 34.55731 * 15 14 12 18 18 N 1.30903 * 120.00655 * 210.10127 * 17 15 14 19 19 Si 1.86803 * 119.99745 * 30.10293 * 17 15 14 20 20 H 1.48500 * 109.47509 * 95.28943 * 19 17 15 21 21 H 1.48508 * 109.47081 * 215.28677 * 19 17 15 22 22 H 1.48505 * 109.47283 * 335.28436 * 19 17 15 23 23 C 1.53258 * 108.95334 * 305.40965 * 6 5 4 24 24 O 1.42971 * 109.47304 * 240.00259 * 2 1 3 25 25 H 1.08998 * 109.46897 * 299.99938 * 1 2 3 26 26 H 1.08992 * 109.47232 * 59.99649 * 1 2 3 27 27 H 1.09003 * 109.47005 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47339 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47216 * 300.00360 * 3 2 1 30 30 H 1.09004 * 109.46709 * 59.99892 * 3 2 1 31 31 H 1.09000 * 109.56151 * 298.13724 * 5 4 2 32 32 H 1.08999 * 109.55421 * 177.81296 * 5 4 2 33 33 H 1.08998 * 109.57890 * 65.28442 * 6 5 4 34 34 H 0.97005 * 119.99972 * 24.74226 * 7 6 5 35 35 H 1.07996 * 119.89365 * 0.02562 * 9 8 7 36 36 H 1.08004 * 119.67241 * 180.30148 * 10 9 8 37 37 H 1.07999 * 119.78108 * 179.69943 * 11 10 9 38 38 H 0.96994 * 120.00713 * 180.02562 * 18 17 15 39 39 H 1.08995 * 109.56059 * 174.42894 * 23 6 5 40 40 H 1.09003 * 109.56025 * 294.75468 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0066 -0.6740 1.1672 5 6 1.6041 -2.0449 1.2464 6 6 2.1043 -2.7830 -0.0001 7 7 1.5886 -4.1542 0.0014 8 6 2.2659 -5.1512 -0.6870 9 6 3.4276 -4.8533 -1.3822 10 6 4.1055 -5.8474 -2.0626 11 6 3.6290 -7.1509 -2.0707 12 6 2.4742 -7.4757 -1.3938 13 9 2.0163 -8.7467 -1.4055 14 6 1.7718 -6.4772 -0.6887 15 6 0.5882 -6.7967 0.0078 16 1 -0.2162 -6.0781 0.0635 17 6 0.4557 -8.0444 0.6267 18 7 -0.7267 -8.5929 0.7477 19 14 1.9663 -8.9277 1.2804 20 1 2.1267 -8.6304 2.7264 21 1 1.8042 -10.3918 1.0911 22 1 3.1690 -8.4635 0.5432 23 6 1.6041 -2.0476 -1.2482 24 8 2.0066 -0.6739 -1.1674 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.5167 -2.1039 1.2937 32 1 2.0349 -2.5007 2.1379 33 1 3.1941 -2.8028 -0.0001 34 1 0.7737 -4.3654 0.4835 35 1 3.8071 -3.8422 -1.3878 36 1 5.0124 -5.6064 -2.5973 37 1 4.1674 -7.9155 -2.6110 38 1 -0.8186 -9.4577 1.1771 39 1 2.0348 -2.5055 -2.1387 40 1 0.5167 -2.1066 -1.2953 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168908506.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:25 Heat of formation + Delta-G solvation = -125.357240 kcal Electronic energy + Delta-G solvation = -24574.169077 eV Core-core repulsion = 20881.660862 eV Total energy + Delta-G solvation = -3692.508215 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.52677 -41.54109 -39.72414 -36.74582 -36.56955 -35.48952 -33.47040 -32.21995 -30.89607 -29.03181 -28.16299 -27.14589 -26.71989 -23.91584 -22.77999 -22.10038 -20.78996 -19.69550 -18.80350 -18.34489 -17.79803 -17.28764 -16.95915 -16.67309 -16.25871 -16.10821 -16.01106 -15.70294 -15.64242 -14.81344 -14.50963 -14.24567 -14.07561 -13.88348 -13.61467 -13.45053 -13.33921 -13.16922 -13.06885 -13.02108 -12.76910 -12.67072 -12.18736 -12.07943 -11.97028 -11.90429 -11.53233 -11.40065 -10.98715 -10.65907 -10.46684 -9.34874 -8.89614 -8.30294 -6.25287 0.68191 0.91633 1.29687 1.38766 1.44187 2.18087 2.34927 2.52403 2.59654 2.92538 3.36751 3.56528 3.71568 3.78149 3.88783 3.95048 4.03250 4.29834 4.34760 4.51915 4.54882 4.57304 4.62016 4.70981 4.74211 4.74913 4.82319 4.89137 4.97756 5.09284 5.22046 5.24517 5.39793 5.51490 5.67341 5.78349 5.91689 6.09613 6.15996 6.33869 6.46969 6.79862 6.92388 7.03892 8.16833 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.022956 B = 0.004631 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.411995 B = 6044.925768 C = 6706.761777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.248 3.752 3 C -0.125 4.125 4 O -0.390 6.390 5 C 0.054 3.946 6 C 0.100 3.900 7 N -0.726 5.726 8 C 0.156 3.844 9 C -0.185 4.185 10 C -0.143 4.143 11 C -0.176 4.176 12 C -0.017 4.017 13 F -0.163 7.163 14 C -0.004 4.004 15 C -0.492 4.492 16 H 0.071 0.929 17 C 0.067 3.933 18 N -0.835 5.835 19 Si 0.952 3.048 20 H -0.284 1.284 21 H -0.279 1.279 22 H -0.255 1.255 23 C 0.045 3.955 24 O -0.396 6.396 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.400 0.600 35 H 0.128 0.872 36 H 0.141 0.859 37 H 0.122 0.878 38 H 0.288 0.712 39 H 0.097 0.903 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.543 15.941 -0.180 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.172 3.828 3 C -0.182 4.182 4 O -0.310 6.310 5 C -0.023 4.023 6 C -0.007 4.007 7 N -0.361 5.361 8 C 0.054 3.946 9 C -0.209 4.209 10 C -0.162 4.162 11 C -0.196 4.196 12 C -0.038 4.038 13 F -0.143 7.143 14 C -0.010 4.010 15 C -0.522 4.522 16 H 0.088 0.912 17 C -0.149 4.149 18 N -0.461 5.461 19 Si 0.777 3.223 20 H -0.212 1.212 21 H -0.205 1.205 22 H -0.179 1.179 23 C -0.033 4.033 24 O -0.316 6.316 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.104 0.896 34 H 0.236 0.764 35 H 0.146 0.854 36 H 0.159 0.841 37 H 0.140 0.860 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.621 16.113 -0.122 16.763 hybrid contribution -0.662 -1.698 0.462 1.880 sum 3.959 14.415 0.340 14.953 Atomic orbital electron populations 1.22832 0.94916 1.03363 1.05043 1.23249 0.92394 0.91901 0.75266 1.21665 1.02654 0.89242 1.04628 1.88147 1.76506 1.22851 1.43542 1.22851 1.00228 0.81324 0.97926 1.21889 1.00141 0.82423 0.96216 1.43909 1.29613 1.04735 1.57807 1.17720 0.92818 0.88066 0.95994 1.20561 0.96684 0.99896 1.03725 1.20519 1.01312 0.91036 1.03332 1.20724 0.96424 0.98598 1.03875 1.17814 0.99884 0.79276 1.06864 1.90976 1.89624 1.38469 1.95203 1.17375 0.94943 0.91170 0.97464 1.18768 1.00344 1.00386 1.32675 0.91153 1.26539 0.98649 0.96509 0.93245 1.69847 1.26940 1.16316 1.32976 0.85651 0.82075 0.77617 0.76920 1.21177 1.20502 1.17944 1.23235 0.99806 0.80926 0.99319 1.88169 1.76462 1.23413 1.43539 0.89162 0.89451 0.92507 0.91456 0.88879 0.88732 0.91352 0.87322 0.89623 0.76379 0.85395 0.84147 0.86018 0.90152 0.88502 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.81 8.11 71.98 0.58 -3.23 16 2 C 0.25 5.51 1.50 30.59 0.05 5.56 16 3 C -0.13 -2.05 9.21 71.98 0.66 -1.39 16 4 O -0.39 -9.89 10.35 -126.22 -1.31 -11.19 16 5 C 0.05 1.36 6.07 72.07 0.44 1.80 16 6 C 0.10 2.88 2.53 45.16 0.11 3.00 16 7 N -0.73 -25.64 5.16 -316.87 -1.64 -27.28 16 8 C 0.16 6.49 6.66 38.93 0.26 6.75 16 9 C -0.19 -6.83 8.88 22.36 0.20 -6.63 16 10 C -0.14 -5.19 10.03 22.40 0.22 -4.96 16 11 C -0.18 -7.33 9.99 22.29 0.22 -7.11 16 12 C -0.02 -0.85 5.05 22.83 0.12 -0.73 16 13 F -0.16 -8.52 12.82 44.97 0.58 -7.94 16 14 C 0.00 -0.19 4.89 -21.13 -0.10 -0.29 16 15 C -0.49 -26.32 8.64 23.35 0.20 -26.12 16 16 H 0.07 3.87 7.20 -2.91 -0.02 3.85 16 17 C 0.07 3.63 4.70 85.24 0.40 4.03 16 18 N -0.83 -46.22 13.93 21.83 0.30 -45.91 16 19 Si 0.95 45.50 25.30 68.60 1.74 47.24 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.26 -12.49 5.49 99.48 0.55 -11.95 16 23 C 0.05 1.24 6.14 72.07 0.44 1.68 16 24 O -0.40 -10.47 10.36 -126.22 -1.31 -11.78 16 25 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.19 5.12 -2.39 -0.01 1.17 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.07 1.61 6.53 -2.39 -0.02 1.60 16 32 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.09 2.57 6.49 -2.39 -0.02 2.56 16 34 H 0.40 14.66 7.00 -92.70 -0.65 14.01 16 35 H 0.13 4.05 6.01 -2.91 -0.02 4.04 16 36 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 37 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 39 H 0.10 2.78 7.67 -2.39 -0.02 2.76 16 40 H 0.06 1.62 6.54 -2.39 -0.02 1.60 16 Total: -1.00 -60.56 315.87 2.44 -58.12 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.26 Total: 26.41 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 3.81 Total: -27.67 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -1.33 Total: -73.19 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -2.61 Total: -22.97 kcal Atomic # 9 Polarization: -8.52 SS G_CDS: 0.58 Total: -7.94 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.74 Total: 47.24 kcal Total: -60.56 2.44 -58.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168908506.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.236 kcal (2) G-P(sol) polarization free energy of solvation -60.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds