Wall clock time and date at job start Tue Mar 31 2020 06:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.50901 * 2 1 4 4 O 1.43364 * 109.63527 * 120.32153 * 2 1 3 5 5 C 1.44189 * 107.29322 * 120.54103 * 4 2 1 6 6 C 1.54913 * 103.07461 * 21.44114 * 5 4 2 7 7 H 1.08995 * 110.98371 * 82.58228 * 6 5 4 8 8 C 1.53000 * 110.97791 * 206.32762 * 6 5 4 9 9 N 1.46498 * 109.47212 * 184.99489 * 8 6 5 10 10 C 1.38803 * 120.00292 * 179.97438 * 9 8 6 11 11 C 1.38631 * 120.21566 * 0.02562 * 10 9 8 12 12 C 1.38228 * 120.21651 * 179.97438 * 11 10 9 13 13 C 1.38783 * 120.66574 * 359.97438 * 12 11 10 14 14 C 1.37742 * 120.42833 * 0.02562 * 13 12 11 15 15 F 1.35095 * 120.11742 * 179.97438 * 14 13 12 16 16 C 1.40998 * 119.76268 * 359.76509 * 14 13 12 17 17 C 1.41000 * 120.31762 * 180.24824 * 16 14 13 18 18 H 1.07998 * 119.99750 * 216.78102 * 17 16 14 19 19 C 1.39911 * 119.99837 * 36.78799 * 17 16 14 20 20 N 1.30909 * 119.99773 * 19.59673 * 19 17 16 21 21 Si 1.86796 * 119.99686 * 199.59140 * 19 17 16 22 22 H 1.48493 * 109.47323 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47032 * 120.00294 * 21 19 17 24 24 H 1.48504 * 109.47060 * 239.99895 * 21 19 17 25 25 O 1.43755 * 109.62986 * 239.68328 * 2 1 3 26 26 H 1.09006 * 109.46831 * 301.13855 * 1 2 3 27 27 H 1.09001 * 109.46911 * 61.13334 * 1 2 3 28 28 H 1.08994 * 109.47176 * 181.13927 * 1 2 3 29 29 H 1.09005 * 109.47051 * 178.86769 * 3 2 1 30 30 H 1.09002 * 109.47526 * 298.86759 * 3 2 1 31 31 H 1.08995 * 109.47393 * 58.86525 * 3 2 1 32 32 H 1.09000 * 110.69547 * 139.83137 * 5 4 2 33 33 H 1.09001 * 110.69881 * 262.87342 * 5 4 2 34 34 H 1.08996 * 109.47317 * 304.99796 * 8 6 5 35 35 H 1.09003 * 109.47142 * 64.99942 * 8 6 5 36 36 H 0.97002 * 120.00304 * 0.02562 * 9 8 6 37 37 H 1.07998 * 119.89002 * 359.97275 * 11 10 9 38 38 H 1.08004 * 119.66232 * 179.97438 * 12 11 10 39 39 H 1.07994 * 119.78663 * 179.97438 * 13 12 11 40 40 H 0.97000 * 119.99379 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 8 2.0118 -0.6817 1.1656 5 6 2.8147 -1.7903 0.7125 6 6 3.2065 -1.3740 -0.7273 7 1 4.0656 -0.7033 -0.7195 8 6 3.4820 -2.6023 -1.5968 9 7 3.9634 -2.1717 -2.9118 10 6 4.2820 -3.1162 -3.8777 11 6 4.1458 -4.4682 -3.6032 12 6 4.4625 -5.4088 -4.5653 13 6 4.9192 -5.0163 -5.8156 14 6 5.0647 -3.6802 -6.1174 15 9 5.5103 -3.3051 -7.3363 16 6 4.7426 -2.7053 -5.1510 17 6 4.8821 -1.3343 -5.4491 18 1 5.2212 -0.6478 -4.6874 19 6 4.5811 -0.8631 -6.7317 20 7 3.8255 -1.5745 -7.5296 21 14 5.2573 0.7810 -7.3052 22 1 6.0764 1.3840 -6.2233 23 1 6.1011 0.5761 -8.5099 24 1 4.1314 1.6902 -7.6383 25 8 2.0129 -0.6835 -1.1688 26 1 -0.3633 0.5315 0.8797 27 1 -0.3633 0.4961 -0.9000 28 1 -0.3633 -1.0274 0.0204 29 1 3.1308 1.4415 0.0203 30 1 1.6947 1.9504 -0.9000 31 1 1.6615 1.9621 0.8796 32 1 3.7019 -1.9034 1.3356 33 1 2.2311 -2.7109 0.7047 34 1 4.2389 -3.2238 -1.1184 35 1 2.5631 -3.1763 -1.7165 36 1 4.0603 -1.2265 -3.1072 37 1 3.7911 -4.7876 -2.6344 38 1 4.3534 -6.4598 -4.3416 39 1 5.1630 -5.7632 -6.5566 40 1 3.6172 -1.2480 -8.4190 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169911986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:32 Heat of formation + Delta-G solvation = -111.167718 kcal Electronic energy + Delta-G solvation = -24080.844804 eV Core-core repulsion = 20388.951893 eV Total energy + Delta-G solvation = -3691.892911 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.81687 -40.68538 -37.88138 -35.39253 -34.51357 -33.47924 -32.80638 -30.17577 -29.22750 -27.60737 -27.49275 -25.35897 -24.58916 -22.13040 -21.23810 -20.74295 -20.07227 -17.55797 -17.31570 -16.69159 -16.21708 -15.69648 -15.13658 -14.90439 -14.78334 -14.17246 -13.99413 -13.77756 -13.69060 -13.63090 -13.36845 -12.91053 -12.64417 -12.55290 -12.43203 -12.27665 -12.14899 -11.79978 -11.64225 -11.31565 -11.22966 -11.16473 -11.10335 -10.73102 -10.56327 -10.21259 -10.05340 -9.72871 -9.47836 -8.97748 -8.88549 -7.11603 -6.69023 -6.36560 -4.19313 2.78730 2.93711 3.15601 3.19918 3.20254 3.26198 3.83962 4.04690 4.06778 4.67618 4.70660 4.72773 4.79430 4.91007 4.98012 5.19643 5.40781 5.42224 5.45537 5.52014 5.58114 5.59488 5.78583 5.84709 5.96707 6.05272 6.09255 6.11598 6.15388 6.44264 6.52961 7.00892 7.05991 7.25055 7.37419 7.37743 7.65294 7.86187 8.11850 8.36318 8.56043 8.73892 8.94275 9.03067 10.36462 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.004833 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.298124 B = 5791.670450 C = 7184.019250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.247 3.753 3 C -0.171 4.171 4 O -0.382 6.382 5 C 0.030 3.970 6 C 0.038 3.962 7 H 0.089 0.911 8 C 0.146 3.854 9 N -0.740 5.740 10 C 0.149 3.851 11 C -0.194 4.194 12 C -0.163 4.163 13 C -0.180 4.180 14 C 0.061 3.939 15 F -0.143 7.143 16 C 0.042 3.958 17 C -0.475 4.475 18 H 0.075 0.925 19 C 0.081 3.919 20 N -0.786 5.786 21 Si 0.902 3.098 22 H -0.263 1.263 23 H -0.273 1.273 24 H -0.278 1.278 25 O -0.356 6.356 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.401 0.599 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 2.346 13.569 14.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.170 3.830 3 C -0.228 4.228 4 O -0.303 6.303 5 C -0.047 4.047 6 C -0.020 4.020 7 H 0.107 0.893 8 C 0.020 3.980 9 N -0.375 5.375 10 C 0.049 3.951 11 C -0.217 4.217 12 C -0.183 4.183 13 C -0.201 4.201 14 C 0.039 3.961 15 F -0.122 7.122 16 C 0.036 3.964 17 C -0.506 4.506 18 H 0.093 0.907 19 C -0.137 4.137 20 N -0.411 5.411 21 Si 0.727 3.273 22 H -0.187 1.187 23 H -0.198 1.198 24 H -0.203 1.203 25 O -0.277 6.277 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.237 0.763 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.417 2.336 13.437 14.061 hybrid contribution 0.371 1.069 -0.734 1.349 sum -3.046 3.406 12.703 13.500 Atomic orbital electron populations 1.22056 0.92431 1.03523 1.03034 1.23385 0.93973 0.90544 0.75091 1.22373 1.02296 0.94960 1.03191 1.88858 1.68625 1.42996 1.29855 1.24119 0.95701 0.90647 0.94234 1.24201 0.89469 0.95050 0.93250 0.89335 1.21010 0.99082 0.93202 0.84738 1.43848 1.75211 1.07756 1.10649 1.17603 0.99405 0.87935 0.90170 1.20048 1.11062 0.91448 0.99155 1.19923 1.07654 0.96981 0.93694 1.20429 1.07930 0.93952 0.97760 1.17450 1.05221 0.91390 0.82055 1.91314 1.86635 1.92431 1.41785 1.17075 0.96095 0.93669 0.89547 1.18911 1.42086 0.92759 0.96798 0.90659 1.25654 0.93056 0.98815 0.96215 1.69807 1.25453 1.37834 1.08012 0.86363 0.79511 0.81932 0.79482 1.18702 1.19841 1.20343 1.89411 1.40883 1.66260 1.31135 0.90784 0.90567 0.91476 0.91831 0.90423 0.91017 0.88128 0.90274 0.91599 0.92195 0.76317 0.88809 0.88571 0.88512 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.24 37.16 0.34 -1.33 16 2 C 0.25 3.11 1.47 -26.73 -0.04 3.07 16 3 C -0.17 -1.87 9.19 37.16 0.34 -1.53 16 4 O -0.38 -4.80 10.87 -59.04 -0.64 -5.44 16 5 C 0.03 0.33 7.54 38.17 0.29 0.61 16 6 C 0.04 0.50 3.53 -25.72 -0.09 0.41 16 7 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 8 C 0.15 2.20 4.67 -4.04 -0.02 2.18 16 9 N -0.74 -14.60 5.63 -58.23 -0.33 -14.92 16 10 C 0.15 3.47 6.68 -83.32 -0.56 2.91 16 11 C -0.19 -4.16 9.29 -39.44 -0.37 -4.52 16 12 C -0.16 -3.53 10.03 -39.38 -0.40 -3.92 16 13 C -0.18 -4.29 9.99 -39.56 -0.40 -4.69 16 14 C 0.06 1.63 6.67 -38.72 -0.26 1.37 16 15 F -0.14 -4.01 14.27 2.25 0.03 -3.98 16 16 C 0.04 1.10 5.41 -106.56 -0.58 0.52 16 17 C -0.48 -12.60 8.13 -37.91 -0.31 -12.91 16 18 H 0.08 1.89 7.14 -52.49 -0.37 1.52 16 19 C 0.08 2.13 4.52 -17.32 -0.08 2.05 16 20 N -0.79 -21.68 11.11 55.55 0.62 -21.06 16 21 Si 0.90 19.72 29.60 -169.99 -5.03 14.69 16 22 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 25 O -0.36 -5.41 10.73 -59.04 -0.63 -6.04 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 34 H 0.07 0.88 7.94 -51.93 -0.41 0.47 16 35 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 36 H 0.40 8.14 6.91 -40.82 -0.28 7.86 16 37 H 0.09 1.73 6.71 -52.49 -0.35 1.38 16 38 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 39 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 40 H 0.28 7.10 8.30 -40.82 -0.34 6.76 16 LS Contribution 334.11 15.07 5.03 5.03 Total: -1.00 -30.17 334.11 -8.67 -38.84 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.61 Total: 8.65 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -2.11 Total: -15.76 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.29 Total: -35.99 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -1.27 Total: -11.49 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.03 Total: -3.98 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.17 -8.67 -38.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169911986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.328 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds