Wall clock time and date at job start Tue Mar 31 2020 06:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.50901 * 2 1 4 4 O 1.43364 * 109.63527 * 120.32153 * 2 1 3 5 5 C 1.44189 * 107.29322 * 120.54103 * 4 2 1 6 6 C 1.54913 * 103.07461 * 21.44114 * 5 4 2 7 7 H 1.08995 * 110.98371 * 82.58228 * 6 5 4 8 8 C 1.53000 * 110.97791 * 206.32762 * 6 5 4 9 9 N 1.46498 * 109.47212 * 184.99489 * 8 6 5 10 10 C 1.38803 * 120.00292 * 179.97438 * 9 8 6 11 11 C 1.38631 * 120.21566 * 0.02562 * 10 9 8 12 12 C 1.38228 * 120.21651 * 179.97438 * 11 10 9 13 13 C 1.38783 * 120.66574 * 359.97438 * 12 11 10 14 14 C 1.37742 * 120.42833 * 0.02562 * 13 12 11 15 15 F 1.35095 * 120.11742 * 179.97438 * 14 13 12 16 16 C 1.40998 * 119.76268 * 359.76509 * 14 13 12 17 17 C 1.41000 * 120.31762 * 180.24824 * 16 14 13 18 18 H 1.07998 * 119.99750 * 216.78102 * 17 16 14 19 19 C 1.39911 * 119.99837 * 36.78799 * 17 16 14 20 20 N 1.30909 * 119.99773 * 19.59673 * 19 17 16 21 21 Si 1.86796 * 119.99686 * 199.59140 * 19 17 16 22 22 H 1.48493 * 109.47323 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47032 * 120.00294 * 21 19 17 24 24 H 1.48504 * 109.47060 * 239.99895 * 21 19 17 25 25 O 1.43755 * 109.62986 * 239.68328 * 2 1 3 26 26 H 1.09006 * 109.46831 * 301.13855 * 1 2 3 27 27 H 1.09001 * 109.46911 * 61.13334 * 1 2 3 28 28 H 1.08994 * 109.47176 * 181.13927 * 1 2 3 29 29 H 1.09005 * 109.47051 * 178.86769 * 3 2 1 30 30 H 1.09002 * 109.47526 * 298.86759 * 3 2 1 31 31 H 1.08995 * 109.47393 * 58.86525 * 3 2 1 32 32 H 1.09000 * 110.69547 * 139.83137 * 5 4 2 33 33 H 1.09001 * 110.69881 * 262.87342 * 5 4 2 34 34 H 1.08996 * 109.47317 * 304.99796 * 8 6 5 35 35 H 1.09003 * 109.47142 * 64.99942 * 8 6 5 36 36 H 0.97002 * 120.00304 * 0.02562 * 9 8 6 37 37 H 1.07998 * 119.89002 * 359.97275 * 11 10 9 38 38 H 1.08004 * 119.66232 * 179.97438 * 12 11 10 39 39 H 1.07994 * 119.78663 * 179.97438 * 13 12 11 40 40 H 0.97000 * 119.99379 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 8 2.0118 -0.6817 1.1656 5 6 2.8147 -1.7903 0.7125 6 6 3.2065 -1.3740 -0.7273 7 1 4.0656 -0.7033 -0.7195 8 6 3.4820 -2.6023 -1.5968 9 7 3.9634 -2.1717 -2.9118 10 6 4.2820 -3.1162 -3.8777 11 6 4.1458 -4.4682 -3.6032 12 6 4.4625 -5.4088 -4.5653 13 6 4.9192 -5.0163 -5.8156 14 6 5.0647 -3.6802 -6.1174 15 9 5.5103 -3.3051 -7.3363 16 6 4.7426 -2.7053 -5.1510 17 6 4.8821 -1.3343 -5.4491 18 1 5.2212 -0.6478 -4.6874 19 6 4.5811 -0.8631 -6.7317 20 7 3.8255 -1.5745 -7.5296 21 14 5.2573 0.7810 -7.3052 22 1 6.0764 1.3840 -6.2233 23 1 6.1011 0.5761 -8.5099 24 1 4.1314 1.6902 -7.6383 25 8 2.0129 -0.6835 -1.1688 26 1 -0.3633 0.5315 0.8797 27 1 -0.3633 0.4961 -0.9000 28 1 -0.3633 -1.0274 0.0204 29 1 3.1308 1.4415 0.0203 30 1 1.6947 1.9504 -0.9000 31 1 1.6615 1.9621 0.8796 32 1 3.7019 -1.9034 1.3356 33 1 2.2311 -2.7109 0.7047 34 1 4.2389 -3.2238 -1.1184 35 1 2.5631 -3.1763 -1.7165 36 1 4.0603 -1.2265 -3.1072 37 1 3.7911 -4.7876 -2.6344 38 1 4.3534 -6.4598 -4.3416 39 1 5.1630 -5.7632 -6.5566 40 1 3.6172 -1.2480 -8.4190 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169911986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:31 Heat of formation + Delta-G solvation = -129.452269 kcal Electronic energy + Delta-G solvation = -24081.637682 eV Core-core repulsion = 20388.951893 eV Total energy + Delta-G solvation = -3692.685789 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.86732 -41.65998 -39.60336 -36.63548 -35.70888 -35.37713 -33.92266 -31.76626 -30.73720 -29.08037 -28.39008 -27.05199 -25.98470 -23.43859 -22.47001 -22.11793 -21.77861 -19.24352 -18.58665 -18.18236 -17.47817 -17.12197 -16.77314 -16.20241 -15.95648 -15.89930 -15.61186 -15.43711 -15.33325 -14.77618 -14.61813 -14.46410 -13.98819 -13.64975 -13.44511 -13.39225 -13.15284 -13.11513 -13.08463 -13.01582 -12.90692 -12.67569 -12.46826 -12.25612 -12.18732 -11.84008 -11.34192 -11.15889 -10.85877 -10.66443 -10.57473 -9.03439 -8.59984 -8.09745 -6.15356 0.96011 1.09137 1.35891 1.45273 1.49347 2.24150 2.32297 2.71349 2.85234 2.92941 3.58782 3.60251 3.75453 3.83514 3.96444 4.00828 4.28644 4.31307 4.44046 4.50305 4.56614 4.64316 4.65146 4.69403 4.75411 4.78401 4.81420 4.86981 5.03587 5.13292 5.18210 5.21302 5.34381 5.57327 5.64952 5.80665 6.03658 6.12072 6.24360 6.51378 6.75525 6.93377 7.12532 7.19226 8.46912 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.004833 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.298124 B = 5791.670450 C = 7184.019250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.238 3.762 3 C -0.169 4.169 4 O -0.390 6.390 5 C 0.034 3.966 6 C 0.038 3.962 7 H 0.091 0.909 8 C 0.143 3.857 9 N -0.740 5.740 10 C 0.152 3.848 11 C -0.199 4.199 12 C -0.143 4.143 13 C -0.201 4.201 14 C 0.025 3.975 15 F -0.161 7.161 16 C 0.000 4.000 17 C -0.500 4.500 18 H 0.077 0.923 19 C 0.036 3.964 20 N -0.831 5.831 21 Si 0.968 3.032 22 H -0.254 1.254 23 H -0.275 1.275 24 H -0.269 1.269 25 O -0.387 6.387 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.395 0.605 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.111 0.889 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.295 1.991 16.080 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.162 3.838 3 C -0.226 4.226 4 O -0.312 6.312 5 C -0.043 4.043 6 C -0.019 4.019 7 H 0.109 0.891 8 C 0.019 3.981 9 N -0.372 5.372 10 C 0.050 3.950 11 C -0.222 4.222 12 C -0.162 4.162 13 C -0.221 4.221 14 C 0.003 3.997 15 F -0.140 7.140 16 C -0.005 4.005 17 C -0.530 4.530 18 H 0.095 0.905 19 C -0.178 4.178 20 N -0.458 5.458 21 Si 0.790 3.210 22 H -0.178 1.178 23 H -0.201 1.201 24 H -0.194 1.194 25 O -0.308 6.308 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.146 0.854 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.230 0.770 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.129 0.871 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.615 1.984 15.999 16.522 hybrid contribution 0.389 1.033 -1.350 1.743 sum -3.226 3.016 14.649 15.301 Atomic orbital electron populations 1.22079 0.91509 1.03486 1.03884 1.23629 0.94795 0.90943 0.74443 1.22369 1.02071 0.94282 1.03919 1.88843 1.68935 1.43570 1.29810 1.24251 0.96717 0.90437 0.92857 1.24210 0.89207 0.94268 0.94214 0.89131 1.21250 0.99439 0.94511 0.82885 1.44053 1.74395 1.07036 1.11738 1.17868 0.97953 0.89516 0.89688 1.20466 1.10462 0.90514 1.00795 1.20450 1.04317 0.99142 0.92341 1.20699 1.08941 0.93093 0.99403 1.17980 1.06851 0.92986 0.81840 1.91248 1.87074 1.92764 1.42912 1.17457 0.97833 0.93961 0.91278 1.19112 1.43200 0.93256 0.97480 0.90546 1.26466 0.92882 1.02227 0.96218 1.69885 1.27439 1.39978 1.08486 0.85369 0.78940 0.77867 0.78840 1.17769 1.20082 1.19444 1.89390 1.41643 1.66930 1.32846 0.88914 0.90705 0.91997 0.92211 0.90654 0.89283 0.85383 0.89271 0.88989 0.92425 0.77050 0.85077 0.84582 0.87134 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.24 71.98 0.66 -2.43 16 2 C 0.24 5.62 1.47 30.59 0.04 5.67 16 3 C -0.17 -3.46 9.19 71.98 0.66 -2.80 16 4 O -0.39 -8.84 10.87 -126.22 -1.37 -10.22 16 5 C 0.03 0.63 7.54 72.64 0.55 1.18 16 6 C 0.04 0.93 3.53 31.25 0.11 1.04 16 7 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 8 C 0.14 3.98 4.67 86.38 0.40 4.38 16 9 N -0.74 -28.49 5.63 -338.14 -1.90 -30.40 16 10 C 0.15 6.97 6.68 38.94 0.26 7.23 16 11 C -0.20 -8.00 9.29 22.36 0.21 -7.79 16 12 C -0.14 -5.81 10.03 22.40 0.22 -5.59 16 13 C -0.20 -9.48 9.99 22.28 0.22 -9.25 16 14 C 0.03 1.39 6.67 22.83 0.15 1.54 16 15 F -0.16 -9.43 14.27 44.97 0.64 -8.78 16 16 C 0.00 0.01 5.41 -21.12 -0.11 -0.11 16 17 C -0.50 -27.28 8.13 23.35 0.19 -27.09 16 18 H 0.08 3.96 7.14 -2.91 -0.02 3.94 16 19 C 0.04 1.94 4.52 85.24 0.39 2.32 16 20 N -0.83 -47.66 11.11 21.83 0.24 -47.42 16 21 Si 0.97 41.58 29.60 68.60 2.03 43.61 16 22 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 25 O -0.39 -11.33 10.73 -126.22 -1.35 -12.69 16 26 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 1.49 8.04 -2.39 -0.02 1.47 16 34 H 0.09 2.11 7.94 -2.39 -0.02 2.09 16 35 H 0.06 1.66 7.94 -2.39 -0.02 1.64 16 36 H 0.39 16.09 6.91 -92.71 -0.64 15.45 16 37 H 0.13 4.25 6.71 -2.91 -0.02 4.23 16 38 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 39 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 40 H 0.28 14.88 8.30 -92.71 -0.77 14.11 16 Total: -1.00 -67.06 334.11 2.66 -64.40 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 0.41 Total: 33.18 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: 3.96 Total: -31.69 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -1.66 Total: -77.81 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -2.73 Total: -22.91 kcal Atomic # 9 Polarization: -9.43 SS G_CDS: 0.64 Total: -8.78 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -67.06 2.66 -64.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169911986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.050 kcal (2) G-P(sol) polarization free energy of solvation -67.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds