Wall clock time and date at job start Tue Mar 31 2020 06:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.50677 * 2 1 4 4 O 1.43367 * 109.63375 * 120.32300 * 2 1 3 5 5 C 1.44187 * 107.28843 * 120.54621 * 4 2 1 6 6 C 1.54914 * 103.07893 * 21.43521 * 5 4 2 7 7 H 1.09001 * 110.97536 * 82.58632 * 6 5 4 8 8 C 1.53007 * 110.97712 * 206.33219 * 6 5 4 9 9 N 1.46498 * 109.46916 * 184.99820 * 8 6 5 10 10 C 1.39679 * 119.99845 * 179.97438 * 9 8 6 11 11 C 1.39294 * 119.93921 * 359.97438 * 10 9 8 12 12 C 1.38702 * 120.39982 * 179.97438 * 11 10 9 13 13 F 1.35097 * 119.86384 * 180.02562 * 12 11 10 14 14 C 1.37920 * 120.27127 * 0.02562 * 12 11 10 15 15 C 1.40705 * 119.87204 * 359.97438 * 14 12 11 16 16 C 1.41416 * 120.19646 * 179.97438 * 15 14 12 17 17 H 1.07993 * 119.99889 * 24.35953 * 16 15 14 18 18 C 1.39928 * 119.99940 * 204.35365 * 16 15 14 19 19 N 1.30835 * 119.99678 * 17.74239 * 18 16 15 20 20 Si 1.86794 * 119.99984 * 197.73498 * 18 16 15 21 21 H 1.48499 * 109.46899 * 90.00329 * 20 18 16 22 22 H 1.48491 * 109.47172 * 210.00480 * 20 18 16 23 23 H 1.48510 * 109.47322 * 330.00493 * 20 18 16 24 24 C 1.38293 * 119.93630 * 179.73109 * 10 9 8 25 25 O 1.43753 * 109.62470 * 239.68615 * 2 1 3 26 26 H 1.09005 * 109.46722 * 301.12928 * 1 2 3 27 27 H 1.08996 * 109.47367 * 61.12991 * 1 2 3 28 28 H 1.09001 * 109.47411 * 181.13887 * 1 2 3 29 29 H 1.09000 * 109.46760 * 178.86706 * 3 2 1 30 30 H 1.09004 * 109.47277 * 298.86588 * 3 2 1 31 31 H 1.08994 * 109.47277 * 58.87057 * 3 2 1 32 32 H 1.09007 * 110.69458 * 139.83504 * 5 4 2 33 33 H 1.09003 * 110.69748 * 263.03724 * 5 4 2 34 34 H 1.09003 * 109.46822 * 304.99645 * 8 6 5 35 35 H 1.09002 * 109.46969 * 64.99632 * 8 6 5 36 36 H 0.97000 * 119.99976 * 0.02562 * 9 8 6 37 37 H 1.08001 * 119.79964 * 0.02562 * 11 10 9 38 38 H 1.07998 * 120.06109 * 179.97438 * 14 12 11 39 39 H 0.96998 * 119.99358 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.14372 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 8 2.0117 -0.6817 1.1656 5 6 2.8147 -1.7903 0.7124 6 6 3.2065 -1.3739 -0.7274 7 1 4.0657 -0.7032 -0.7195 8 6 3.4820 -2.6023 -1.5970 9 7 3.9634 -2.1716 -2.9119 10 6 4.2839 -3.1221 -3.8840 11 6 4.1458 -4.4791 -3.6016 12 6 4.4608 -5.4310 -4.5599 13 9 4.3224 -6.7442 -4.2745 14 6 4.9148 -5.0425 -5.8029 15 6 5.0586 -3.6748 -6.1004 16 6 5.5240 -3.2687 -7.3725 17 1 5.4011 -3.9195 -8.2255 18 6 6.1438 -2.0236 -7.5261 19 7 6.6059 -1.3894 -6.4791 20 14 6.3115 -1.2670 -9.2257 21 1 5.1189 -0.4309 -9.5151 22 1 7.5318 -0.4222 -9.2732 23 1 6.4171 -2.3467 -10.2400 24 6 4.7329 -2.7139 -5.1267 25 8 2.0128 -0.6834 -1.1689 26 1 -0.3633 0.5313 0.8797 27 1 -0.3634 0.4962 -0.8999 28 1 -0.3634 -1.0275 0.0204 29 1 3.1307 1.4415 0.0203 30 1 1.6946 1.9503 -0.9000 31 1 1.6615 1.9620 0.8796 32 1 3.7019 -1.9034 1.3356 33 1 2.2304 -2.7103 0.7018 34 1 4.2390 -3.2237 -1.1186 35 1 2.5631 -3.1763 -1.7166 36 1 4.0603 -1.2264 -3.1072 37 1 3.7905 -4.7918 -2.6308 38 1 5.1595 -5.7866 -6.5464 39 1 7.0359 -0.5265 -6.5857 40 1 4.8360 -1.6618 -5.3474 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169912146.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:34 Heat of formation + Delta-G solvation = -122.753236 kcal Electronic energy + Delta-G solvation = -23481.679061 eV Core-core repulsion = 19789.283764 eV Total energy + Delta-G solvation = -3692.395297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.70157 -40.77352 -37.84725 -35.63615 -34.81354 -33.56963 -32.71063 -30.05054 -29.26834 -27.69173 -27.52212 -25.52039 -24.73422 -22.12764 -21.33685 -20.85781 -20.32224 -17.79144 -17.42603 -16.68469 -16.14120 -15.42469 -15.23745 -15.00079 -14.94937 -14.56683 -14.37815 -14.09440 -13.93577 -13.78729 -13.55126 -13.01732 -12.90971 -12.62607 -12.51429 -12.36861 -12.24157 -11.92361 -11.83368 -11.60831 -11.28337 -11.15548 -10.99473 -10.56850 -10.50783 -10.28089 -10.09098 -9.81482 -9.66485 -9.36346 -8.73331 -7.37723 -6.85951 -6.33357 -4.47067 2.73334 2.95727 3.05488 3.09122 3.16935 3.21366 3.74561 3.89357 3.92075 4.55921 4.58572 4.63400 4.65423 4.80725 4.88784 5.11339 5.34550 5.36630 5.37700 5.50122 5.50683 5.60203 5.70340 5.73519 5.80386 5.87991 5.97178 6.02538 6.33348 6.63365 6.76932 6.96671 6.99536 7.16381 7.27327 7.51502 7.69754 7.93072 8.02682 8.30757 8.54375 8.67590 8.85447 8.92565 10.12531 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.003918 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.136343 B = 7144.396782 C = 8590.793531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.247 3.753 3 C -0.171 4.171 4 O -0.381 6.381 5 C 0.030 3.970 6 C 0.037 3.963 7 H 0.089 0.911 8 C 0.145 3.855 9 N -0.753 5.753 10 C 0.240 3.760 11 C -0.335 4.335 12 C 0.142 3.858 13 F -0.169 7.169 14 C -0.289 4.289 15 C 0.158 3.842 16 C -0.457 4.457 17 H 0.081 0.919 18 C 0.078 3.922 19 N -0.785 5.785 20 Si 0.909 3.091 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.261 1.261 24 C -0.238 4.238 25 O -0.359 6.359 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.396 0.604 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.280 0.720 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.488 5.627 11.701 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.170 3.830 3 C -0.228 4.228 4 O -0.302 6.302 5 C -0.047 4.047 6 C -0.020 4.020 7 H 0.107 0.893 8 C 0.019 3.981 9 N -0.387 5.387 10 C 0.141 3.859 11 C -0.358 4.358 12 C 0.123 3.877 13 F -0.148 7.148 14 C -0.310 4.310 15 C 0.154 3.846 16 C -0.486 4.486 17 H 0.099 0.901 18 C -0.140 4.140 19 N -0.410 5.410 20 Si 0.733 3.267 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.185 1.185 24 C -0.262 4.262 25 O -0.280 6.280 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.230 0.770 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.561 5.733 11.934 14.776 hybrid contribution 0.335 0.498 -0.668 0.898 sum -6.226 6.231 11.266 14.301 Atomic orbital electron populations 1.22061 0.92386 1.03573 1.03050 1.23388 0.93989 0.90520 0.75074 1.22374 1.02306 0.94927 1.03212 1.88867 1.68619 1.43008 1.29750 1.24129 0.95772 0.90658 0.94153 1.24223 0.89379 0.95001 0.93431 0.89271 1.21046 0.99339 0.93231 0.84476 1.44240 1.75769 1.07185 1.11459 1.17253 0.92927 0.87329 0.88435 1.19685 1.24588 0.91327 1.00214 1.17219 1.00105 0.75691 0.94691 1.91323 1.94110 1.34886 1.94439 1.20837 1.17418 0.96895 0.95839 1.17062 0.85947 0.89146 0.92404 1.19586 1.33094 1.00922 0.95019 0.90113 1.25919 0.92912 0.96521 0.98698 1.69858 1.26057 1.13599 1.31455 0.86296 0.78445 0.79578 0.82339 1.19206 1.20309 1.18513 1.20758 1.12595 1.00247 0.92637 1.89374 1.40972 1.66318 1.31363 0.90708 0.90612 0.91438 0.91820 0.90488 0.90926 0.87989 0.90193 0.91260 0.91892 0.77015 0.88407 0.88052 0.90882 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.24 37.16 0.34 -1.19 16 2 C 0.25 2.89 1.47 -26.73 -0.04 2.85 16 3 C -0.17 -1.70 9.19 37.16 0.34 -1.36 16 4 O -0.38 -4.60 10.87 -59.04 -0.64 -5.24 16 5 C 0.03 0.31 7.54 38.17 0.29 0.60 16 6 C 0.04 0.46 3.53 -25.72 -0.09 0.37 16 7 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 8 C 0.14 2.13 4.67 -4.04 -0.02 2.11 16 9 N -0.75 -13.91 5.73 -58.69 -0.34 -14.24 16 10 C 0.24 5.46 6.64 -83.87 -0.56 4.91 16 11 C -0.33 -7.65 9.30 -39.02 -0.36 -8.01 16 12 C 0.14 3.45 7.28 -39.53 -0.29 3.16 16 13 F -0.17 -3.85 17.26 2.25 0.04 -3.82 16 14 C -0.29 -7.35 9.76 -38.77 -0.38 -7.73 16 15 C 0.16 4.20 5.57 -106.86 -0.60 3.60 16 16 C -0.46 -11.95 9.05 -37.74 -0.34 -12.29 16 17 H 0.08 2.03 7.91 -52.49 -0.41 1.62 16 18 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 19 N -0.79 -19.64 10.95 55.55 0.61 -19.03 16 20 Si 0.91 18.25 29.59 -169.99 -5.03 13.21 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 24 C -0.24 -6.04 8.53 -38.66 -0.33 -6.37 16 25 O -0.36 -5.00 10.73 -59.04 -0.63 -5.63 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.86 8.14 -51.92 -0.42 0.44 16 33 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 34 H 0.07 0.96 7.94 -51.93 -0.41 0.55 16 35 H 0.06 0.97 7.94 -51.93 -0.41 0.56 16 36 H 0.40 7.07 8.48 -40.82 -0.35 6.72 16 37 H 0.10 2.01 6.70 -52.49 -0.35 1.66 16 38 H 0.10 2.47 8.06 -52.49 -0.42 2.05 16 39 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 40 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 LS Contribution 338.02 15.07 5.09 5.09 Total: -1.00 -28.32 338.02 -8.64 -36.95 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -5.62 Total: 10.21 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -2.12 Total: -17.51 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.27 Total: -33.28 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -1.27 Total: -10.87 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.04 Total: -3.82 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.32 -8.64 -36.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169912146.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.799 kcal (2) G-P(sol) polarization free energy of solvation -28.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds