Wall clock time and date at job start Tue Mar 31 2020 06:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.50677 * 2 1 4 4 O 1.43367 * 109.63375 * 120.32300 * 2 1 3 5 5 C 1.44187 * 107.28843 * 120.54621 * 4 2 1 6 6 C 1.54914 * 103.07893 * 21.43521 * 5 4 2 7 7 H 1.09001 * 110.97536 * 82.58632 * 6 5 4 8 8 C 1.53007 * 110.97712 * 206.33219 * 6 5 4 9 9 N 1.46498 * 109.46916 * 184.99820 * 8 6 5 10 10 C 1.39679 * 119.99845 * 179.97438 * 9 8 6 11 11 C 1.39294 * 119.93921 * 359.97438 * 10 9 8 12 12 C 1.38702 * 120.39982 * 179.97438 * 11 10 9 13 13 F 1.35097 * 119.86384 * 180.02562 * 12 11 10 14 14 C 1.37920 * 120.27127 * 0.02562 * 12 11 10 15 15 C 1.40705 * 119.87204 * 359.97438 * 14 12 11 16 16 C 1.41416 * 120.19646 * 179.97438 * 15 14 12 17 17 H 1.07993 * 119.99889 * 24.35953 * 16 15 14 18 18 C 1.39928 * 119.99940 * 204.35365 * 16 15 14 19 19 N 1.30835 * 119.99678 * 17.74239 * 18 16 15 20 20 Si 1.86794 * 119.99984 * 197.73498 * 18 16 15 21 21 H 1.48499 * 109.46899 * 90.00329 * 20 18 16 22 22 H 1.48491 * 109.47172 * 210.00480 * 20 18 16 23 23 H 1.48510 * 109.47322 * 330.00493 * 20 18 16 24 24 C 1.38293 * 119.93630 * 179.73109 * 10 9 8 25 25 O 1.43753 * 109.62470 * 239.68615 * 2 1 3 26 26 H 1.09005 * 109.46722 * 301.12928 * 1 2 3 27 27 H 1.08996 * 109.47367 * 61.12991 * 1 2 3 28 28 H 1.09001 * 109.47411 * 181.13887 * 1 2 3 29 29 H 1.09000 * 109.46760 * 178.86706 * 3 2 1 30 30 H 1.09004 * 109.47277 * 298.86588 * 3 2 1 31 31 H 1.08994 * 109.47277 * 58.87057 * 3 2 1 32 32 H 1.09007 * 110.69458 * 139.83504 * 5 4 2 33 33 H 1.09003 * 110.69748 * 263.03724 * 5 4 2 34 34 H 1.09003 * 109.46822 * 304.99645 * 8 6 5 35 35 H 1.09002 * 109.46969 * 64.99632 * 8 6 5 36 36 H 0.97000 * 119.99976 * 0.02562 * 9 8 6 37 37 H 1.08001 * 119.79964 * 0.02562 * 11 10 9 38 38 H 1.07998 * 120.06109 * 179.97438 * 14 12 11 39 39 H 0.96998 * 119.99358 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.14372 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 8 2.0117 -0.6817 1.1656 5 6 2.8147 -1.7903 0.7124 6 6 3.2065 -1.3739 -0.7274 7 1 4.0657 -0.7032 -0.7195 8 6 3.4820 -2.6023 -1.5970 9 7 3.9634 -2.1716 -2.9119 10 6 4.2839 -3.1221 -3.8840 11 6 4.1458 -4.4791 -3.6016 12 6 4.4608 -5.4310 -4.5599 13 9 4.3224 -6.7442 -4.2745 14 6 4.9148 -5.0425 -5.8029 15 6 5.0586 -3.6748 -6.1004 16 6 5.5240 -3.2687 -7.3725 17 1 5.4011 -3.9195 -8.2255 18 6 6.1438 -2.0236 -7.5261 19 7 6.6059 -1.3894 -6.4791 20 14 6.3115 -1.2670 -9.2257 21 1 5.1189 -0.4309 -9.5151 22 1 7.5318 -0.4222 -9.2732 23 1 6.4171 -2.3467 -10.2400 24 6 4.7329 -2.7139 -5.1267 25 8 2.0128 -0.6834 -1.1689 26 1 -0.3633 0.5313 0.8797 27 1 -0.3634 0.4962 -0.8999 28 1 -0.3634 -1.0275 0.0204 29 1 3.1307 1.4415 0.0203 30 1 1.6946 1.9503 -0.9000 31 1 1.6615 1.9620 0.8796 32 1 3.7019 -1.9034 1.3356 33 1 2.2304 -2.7103 0.7018 34 1 4.2390 -3.2237 -1.1186 35 1 2.5631 -3.1763 -1.7166 36 1 4.0603 -1.2264 -3.1072 37 1 3.7905 -4.7918 -2.6308 38 1 5.1595 -5.7866 -6.5464 39 1 7.0359 -0.5265 -6.5857 40 1 4.8360 -1.6618 -5.3474 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169912146.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:34 Heat of formation + Delta-G solvation = -138.895024 kcal Electronic energy + Delta-G solvation = -23482.379021 eV Core-core repulsion = 19789.283764 eV Total energy + Delta-G solvation = -3693.095257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.57973 -41.69516 -39.61524 -37.03055 -35.96254 -35.14995 -33.92031 -31.42305 -31.04017 -29.03210 -28.39298 -27.39420 -25.98010 -23.47596 -22.56715 -22.16649 -22.04662 -19.47568 -18.52171 -18.10104 -17.31295 -17.01353 -16.85582 -16.52814 -16.25604 -16.18628 -15.94794 -15.50347 -15.48914 -14.83122 -14.68284 -14.60615 -14.08536 -13.76932 -13.61389 -13.43157 -13.33696 -13.16036 -13.06040 -12.81575 -12.75594 -12.68505 -12.40712 -12.26545 -12.15429 -11.94614 -11.50748 -11.19663 -11.14887 -10.68422 -10.49485 -9.29713 -8.69852 -8.07732 -6.43628 0.89958 1.07225 1.41077 1.53815 1.54798 2.21867 2.27126 2.55845 2.70028 2.89510 3.50434 3.66174 3.69680 3.79342 3.87368 3.94763 3.97029 4.27083 4.44533 4.49147 4.54930 4.61983 4.63975 4.72151 4.74610 4.75998 4.84696 4.92637 4.99069 5.11333 5.12483 5.20433 5.24873 5.45282 5.67092 5.81156 6.08029 6.08205 6.09670 6.43086 6.80108 6.88455 6.92922 7.08159 8.30638 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.003918 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.136343 B = 7144.396782 C = 8590.793531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.237 3.763 3 C -0.168 4.168 4 O -0.390 6.390 5 C 0.032 3.968 6 C 0.041 3.959 7 H 0.095 0.905 8 C 0.142 3.858 9 N -0.745 5.745 10 C 0.250 3.750 11 C -0.335 4.335 12 C 0.140 3.860 13 F -0.161 7.161 14 C -0.315 4.315 15 C 0.134 3.866 16 C -0.493 4.493 17 H 0.077 0.923 18 C 0.041 3.959 19 N -0.810 5.810 20 Si 0.983 3.017 21 H -0.262 1.262 22 H -0.266 1.266 23 H -0.260 1.260 24 C -0.262 4.262 25 O -0.384 6.384 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.127 0.873 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.398 0.602 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.290 0.710 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.768 6.615 12.802 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.161 3.839 3 C -0.226 4.226 4 O -0.312 6.312 5 C -0.044 4.044 6 C -0.016 4.016 7 H 0.113 0.887 8 C 0.018 3.982 9 N -0.377 5.377 10 C 0.147 3.853 11 C -0.358 4.358 12 C 0.120 3.880 13 F -0.140 7.140 14 C -0.337 4.337 15 C 0.130 3.870 16 C -0.522 4.522 17 H 0.095 0.905 18 C -0.175 4.175 19 N -0.435 5.435 20 Si 0.803 3.197 21 H -0.186 1.186 22 H -0.190 1.190 23 H -0.183 1.183 24 C -0.287 4.287 25 O -0.305 6.305 26 H 0.110 0.890 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.145 0.855 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.233 0.767 37 H 0.142 0.858 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.855 6.725 13.084 16.230 hybrid contribution 0.387 0.177 -0.890 0.986 sum -6.468 6.902 12.195 15.433 Atomic orbital electron populations 1.22088 0.91425 1.03461 1.04029 1.23666 0.94849 0.90994 0.74365 1.22370 1.02081 0.94080 1.04065 1.88855 1.68901 1.43498 1.29938 1.24245 0.96678 0.90456 0.93071 1.24171 0.89395 0.94075 0.93981 0.88705 1.21233 0.99383 0.94675 0.82926 1.44344 1.74652 1.06681 1.12070 1.17288 0.91359 0.88195 0.88439 1.19926 1.23950 0.91003 1.00958 1.17338 0.99751 0.76305 0.94598 1.91332 1.94003 1.34360 1.94325 1.20919 1.19233 0.96762 0.96760 1.17390 0.86490 0.89869 0.93215 1.19841 1.34792 1.02481 0.95066 0.90453 1.26730 0.91862 0.96187 1.02768 1.69890 1.25977 1.14115 1.33518 0.85191 0.78822 0.78589 0.77059 1.18638 1.19037 1.18337 1.20709 1.14567 0.99474 0.93923 1.89353 1.41494 1.66860 1.32818 0.89022 0.90331 0.92128 0.92191 0.90268 0.89418 0.85546 0.89528 0.89724 0.92252 0.76741 0.85801 0.88221 0.89940 0.87161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.24 71.98 0.66 -2.14 16 2 C 0.24 5.14 1.47 30.59 0.04 5.19 16 3 C -0.17 -3.06 9.19 71.98 0.66 -2.39 16 4 O -0.39 -8.53 10.87 -126.22 -1.37 -9.90 16 5 C 0.03 0.59 7.54 72.64 0.55 1.14 16 6 C 0.04 0.94 3.53 31.25 0.11 1.05 16 7 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 8 C 0.14 3.91 4.67 86.38 0.40 4.31 16 9 N -0.75 -26.81 5.73 -339.60 -1.95 -28.76 16 10 C 0.25 11.29 6.64 38.16 0.25 11.54 16 11 C -0.33 -14.99 9.30 22.63 0.21 -14.78 16 12 C 0.14 6.76 7.28 22.31 0.16 6.92 16 13 F -0.16 -7.27 17.26 44.97 0.78 -6.49 16 14 C -0.32 -16.49 9.76 22.80 0.22 -16.27 16 15 C 0.13 7.33 5.57 -21.31 -0.12 7.21 16 16 C -0.49 -26.55 9.05 23.46 0.21 -26.34 16 17 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 18 C 0.04 2.04 5.14 85.25 0.44 2.48 16 19 N -0.81 -40.95 10.95 21.82 0.24 -40.71 16 20 Si 0.98 37.33 29.59 68.60 2.03 39.36 16 21 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 22 H -0.27 -9.51 7.11 99.48 0.71 -8.81 16 23 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 24 C -0.26 -13.57 8.53 22.86 0.20 -13.37 16 25 O -0.38 -10.15 10.73 -126.22 -1.35 -11.51 16 26 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.13 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.09 1.49 8.04 -2.39 -0.02 1.47 16 34 H 0.08 2.11 7.94 -2.39 -0.02 2.10 16 35 H 0.06 1.71 7.94 -2.39 -0.02 1.69 16 36 H 0.40 13.99 8.48 -92.71 -0.79 13.20 16 37 H 0.12 4.82 6.70 -2.91 -0.02 4.80 16 38 H 0.10 5.05 8.06 -2.91 -0.02 5.03 16 39 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 40 H 0.11 5.88 6.16 -2.91 -0.02 5.86 16 Total: -1.00 -61.03 338.02 2.65 -58.38 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: 0.27 Total: 35.08 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 4.01 Total: -35.45 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -1.71 Total: -69.47 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -2.73 Total: -21.41 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 0.78 Total: -6.49 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Total: -61.03 2.65 -58.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169912146.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.519 kcal (2) G-P(sol) polarization free energy of solvation -61.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds