Wall clock time and date at job start Tue Mar 31 2020 07:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47163 * 2 1 4 4 C 1.53006 * 109.47163 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46880 * 180.02562 * 4 3 2 6 6 C 1.37100 * 119.99857 * 269.99904 * 5 4 3 7 7 H 1.07995 * 119.99942 * 140.69950 * 6 5 4 8 8 C 1.38946 * 120.00114 * 320.69694 * 6 5 4 9 9 N 1.31412 * 120.00575 * 159.03779 * 8 6 5 10 10 Si 1.86805 * 120.00182 * 339.03973 * 8 6 5 11 11 H 1.48500 * 109.47325 * 95.81282 * 10 8 6 12 12 H 1.48495 * 109.47390 * 215.81750 * 10 8 6 13 13 H 1.48506 * 109.46825 * 335.81754 * 10 8 6 14 14 C 1.34773 * 120.00331 * 90.00251 * 5 4 3 15 15 O 1.21296 * 119.99704 * 5.00789 * 14 5 4 16 16 C 1.50700 * 120.00388 * 185.01155 * 14 5 4 17 17 C 1.52994 * 109.47066 * 185.43202 * 16 14 5 18 18 C 1.50703 * 109.47013 * 179.13130 * 17 16 14 19 19 C 1.33391 * 125.20664 * 89.99893 * 18 17 16 20 20 C 1.38424 * 114.92169 * 179.97438 * 19 18 17 21 21 C 1.33394 * 114.91957 * 359.97438 * 20 19 18 22 22 C 1.50699 * 125.19946 * 180.02562 * 21 20 19 23 23 S 1.75881 * 109.59553 * 359.75718 * 21 20 19 24 24 H 1.08999 * 109.46994 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46857 * 299.99623 * 1 2 3 26 26 H 1.08992 * 109.47140 * 59.99992 * 1 2 3 27 27 H 1.09000 * 109.47195 * 239.99951 * 2 1 3 28 28 H 1.09001 * 109.47319 * 120.00142 * 2 1 3 29 29 H 1.09000 * 109.47105 * 59.99896 * 3 2 1 30 30 H 1.09001 * 109.47119 * 300.00265 * 3 2 1 31 31 H 1.08999 * 109.46857 * 60.00377 * 4 3 2 32 32 H 1.08997 * 109.46749 * 299.99716 * 4 3 2 33 33 H 0.96993 * 120.00758 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47300 * 65.42583 * 16 14 5 35 35 H 1.09005 * 109.46556 * 305.42830 * 16 14 5 36 36 H 1.09001 * 109.47180 * 299.12765 * 17 16 14 37 37 H 1.08999 * 109.47834 * 59.12859 * 17 16 14 38 38 H 1.07998 * 122.53436 * 359.95733 * 19 18 17 39 39 H 1.07993 * 122.54120 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.47501 * 90.00106 * 22 21 20 41 41 H 1.08999 * 109.46795 * 209.99492 * 22 21 20 42 42 H 1.08995 * 109.47414 * 330.00232 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2874 3.4703 -1.1858 7 1 4.0278 4.5133 -1.2914 8 6 4.8535 2.7838 -2.2530 9 7 4.7048 3.2355 -3.4780 10 14 5.8260 1.2186 -1.9464 11 1 4.9423 0.0409 -2.1397 12 1 6.9620 1.1469 -2.8999 13 1 6.3466 1.2238 -0.5556 14 6 4.2826 3.4587 1.1687 15 8 4.1676 2.8593 2.2169 16 6 4.6759 4.9135 1.1718 17 6 5.0001 5.3510 2.6015 18 6 5.4140 6.8001 2.6017 19 6 4.5865 7.8362 2.7465 20 6 5.1962 9.0786 2.7144 21 6 6.5189 9.0513 2.5441 22 6 7.4111 10.2638 2.4753 23 16 7.0634 7.3835 2.4198 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9338 0.9285 -0.8891 32 1 3.9330 0.9288 0.8909 33 1 5.0996 2.7561 -4.2230 34 1 3.8517 5.5135 0.7861 35 1 5.5538 5.0537 0.5410 36 1 4.1177 5.2252 3.2289 37 1 5.8140 4.7406 2.9927 38 1 3.5215 7.7150 2.8785 39 1 4.6430 10.0000 2.8201 40 1 7.7567 10.5181 3.4773 41 1 8.2694 10.0477 1.8391 42 1 6.8528 11.1027 2.0599 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175603425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:05 Heat of formation + Delta-G solvation = -25.298114 kcal Electronic energy + Delta-G solvation = -21301.350490 eV Core-core repulsion = 18179.394340 eV Total energy + Delta-G solvation = -3121.956150 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.01161 -37.88558 -35.70001 -34.00652 -33.63969 -31.89213 -30.83758 -28.75681 -26.57016 -24.82831 -23.93249 -22.87892 -21.80129 -20.69170 -18.94621 -18.60205 -16.93313 -16.69323 -16.09445 -15.39654 -14.97446 -14.73411 -14.61208 -14.07610 -13.83742 -13.59384 -13.17722 -13.01080 -12.86701 -12.66966 -12.49053 -12.29761 -12.11209 -11.84467 -11.63598 -11.45632 -11.30959 -11.22525 -11.01772 -10.69576 -10.63808 -10.57617 -10.38166 -10.30816 -10.04267 -9.77273 -9.18419 -8.64269 -8.30068 -8.20594 -7.77679 -6.50115 -4.10885 1.14982 1.76448 2.17608 2.89179 3.03926 3.20447 3.29416 3.71912 4.11287 4.36410 4.87910 4.91668 5.14086 5.22901 5.35867 5.39798 5.42578 5.48719 5.52716 5.63320 5.72732 5.76877 5.81562 5.88451 6.07933 6.11756 6.15809 6.20898 6.23711 6.25746 6.32727 6.42285 6.45905 6.49989 6.54664 6.67271 6.74573 6.78402 6.92459 7.38343 8.07058 8.23333 8.93587 9.33721 9.68192 10.60546 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.017104 B = 0.003972 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.658839 B = 7047.084171 C = 7958.238749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.102 3.898 5 N -0.465 5.465 6 C -0.345 4.345 7 H 0.104 0.896 8 C 0.070 3.930 9 N -0.859 5.859 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.288 1.288 13 H -0.262 1.262 14 C 0.481 3.519 15 O -0.601 6.601 16 C -0.113 4.113 17 C -0.035 4.035 18 C -0.154 4.154 19 C -0.147 4.147 20 C -0.135 4.135 21 C -0.195 4.195 22 C -0.079 4.079 23 S 0.094 5.906 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.275 0.725 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.494 6.689 8.366 10.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.163 4.163 4 C -0.021 4.021 5 N -0.185 5.185 6 C -0.472 4.472 7 H 0.121 0.879 8 C -0.138 4.138 9 N -0.494 5.494 10 Si 0.701 3.299 11 H -0.201 1.201 12 H -0.215 1.215 13 H -0.186 1.186 14 C 0.271 3.729 15 O -0.487 6.487 16 C -0.153 4.153 17 C -0.074 4.074 18 C -0.272 4.272 19 C -0.176 4.176 20 C -0.165 4.165 21 C -0.312 4.312 22 C -0.137 4.137 23 S 0.358 5.642 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.886 5.692 8.444 10.357 hybrid contribution -0.897 -0.094 -0.151 0.915 sum 0.989 5.598 8.293 10.054 Atomic orbital electron populations 1.21740 0.96169 1.00873 1.01740 1.21484 0.95578 0.97510 1.01595 1.21844 0.96073 0.95941 1.02478 1.21603 0.93915 0.85522 1.01026 1.43736 1.57245 1.11748 1.05776 1.19049 1.42404 0.98184 0.87593 0.87872 1.25319 0.95743 0.97999 0.94692 1.69755 1.40783 1.40532 0.98345 0.86972 0.80370 0.83237 0.79292 1.20074 1.21464 1.18569 1.20415 0.79538 0.89402 0.83521 1.90534 1.57425 1.68756 1.31977 1.21363 1.03658 0.94301 0.95984 1.19955 1.02354 0.87325 0.97812 1.24636 0.95240 1.00079 1.07231 1.20059 1.00925 0.91219 1.05401 1.20014 0.93392 0.98677 1.04456 1.24418 0.98011 0.98032 1.10754 1.20278 0.97922 0.93280 1.02243 1.84290 1.09020 0.98367 1.72569 0.93288 0.92942 0.92755 0.92279 0.92306 0.92187 0.91175 0.91917 0.91379 0.91492 0.89685 0.89002 0.89602 0.90571 0.84457 0.84823 0.91157 0.91481 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.97 5.93 -26.73 -0.16 -2.13 16 3 C -0.12 -2.41 5.54 -26.73 -0.15 -2.56 16 4 C 0.10 2.27 4.24 -4.04 -0.02 2.25 16 5 N -0.47 -11.13 2.14 -114.81 -0.25 -11.37 16 6 C -0.35 -8.86 8.93 -14.93 -0.13 -8.99 16 7 H 0.10 2.76 7.44 -52.49 -0.39 2.37 16 8 C 0.07 1.83 5.32 -17.47 -0.09 1.74 16 9 N -0.86 -23.49 13.96 55.50 0.77 -22.71 16 10 Si 0.87 20.54 25.01 -169.99 -4.25 16.29 16 11 H -0.27 -6.18 6.71 56.52 0.38 -5.80 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.26 -6.31 7.11 56.52 0.40 -5.90 16 14 C 0.48 11.04 7.62 -10.99 -0.08 10.96 16 15 O -0.60 -14.70 15.55 5.54 0.09 -14.62 16 16 C -0.11 -2.18 4.33 -27.89 -0.12 -2.31 16 17 C -0.03 -0.59 5.01 -27.88 -0.14 -0.73 16 18 C -0.15 -2.36 5.76 -36.00 -0.21 -2.56 16 19 C -0.15 -2.04 10.05 -41.21 -0.41 -2.45 16 20 C -0.13 -1.70 10.05 -41.21 -0.41 -2.11 16 21 C -0.19 -2.43 6.51 -36.00 -0.23 -2.67 16 22 C -0.08 -0.72 10.38 36.01 0.37 -0.35 16 23 S 0.09 1.32 23.31 -107.50 -2.51 -1.19 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.06 1.43 3.41 -51.93 -0.18 1.25 16 32 H 0.07 1.51 7.36 -51.93 -0.38 1.13 16 33 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.08 1.60 8.04 -51.93 -0.42 1.18 16 35 H 0.09 1.84 7.86 -51.93 -0.41 1.43 16 36 H 0.09 1.43 8.06 -51.93 -0.42 1.01 16 37 H 0.08 1.33 8.13 -51.93 -0.42 0.90 16 38 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 356.64 15.07 5.37 5.37 Total: -1.00 -28.60 356.64 -9.04 -37.64 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.85 Total: 4.12 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -1.42 Total: -13.53 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.53 Total: -34.09 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.09 Total: -14.62 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.25 Total: 16.29 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.51 Total: -1.19 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.60 -9.04 -37.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175603425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.341 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds