Wall clock time and date at job start Tue Mar 31 2020 07:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47511 * 2 1 4 4 C 1.52995 * 109.47236 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46780 * 179.97438 * 4 3 2 6 6 C 1.37085 * 120.00408 * 265.56041 * 5 4 3 7 7 H 1.08001 * 120.00203 * 145.67111 * 6 5 4 8 8 C 1.38959 * 120.00218 * 325.67230 * 6 5 4 9 9 N 1.31416 * 119.99675 * 338.41524 * 8 6 5 10 10 Si 1.86801 * 120.00064 * 158.40775 * 8 6 5 11 11 H 1.48493 * 109.47002 * 90.00376 * 10 8 6 12 12 H 1.48498 * 109.47110 * 210.00399 * 10 8 6 13 13 H 1.48500 * 109.47170 * 330.00074 * 10 8 6 14 14 C 1.34776 * 119.99599 * 85.56631 * 5 4 3 15 15 O 1.21297 * 119.99974 * 359.97438 * 14 5 4 16 16 C 1.50693 * 120.00121 * 179.97438 * 14 5 4 17 17 C 1.52999 * 109.47665 * 179.97438 * 16 14 5 18 18 C 1.50693 * 109.47665 * 179.97438 * 17 16 14 19 19 C 1.33395 * 125.20462 * 89.99723 * 18 17 16 20 20 C 1.38424 * 114.92155 * 179.75431 * 19 18 17 21 21 C 1.50697 * 122.54192 * 180.27435 * 20 19 18 22 22 C 1.33395 * 114.92075 * 0.42808 * 20 19 18 23 23 S 1.75884 * 109.59203 * 359.59855 * 22 20 19 24 24 H 1.09006 * 109.46446 * 60.00170 * 1 2 3 25 25 H 1.08998 * 109.46874 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47324 * 299.99970 * 1 2 3 27 27 H 1.09007 * 109.47309 * 239.99909 * 2 1 3 28 28 H 1.08999 * 109.47152 * 120.00276 * 2 1 3 29 29 H 1.09001 * 109.46308 * 60.00031 * 3 2 1 30 30 H 1.09006 * 109.46832 * 300.00137 * 3 2 1 31 31 H 1.09000 * 109.47033 * 60.00346 * 4 3 2 32 32 H 1.08999 * 109.47404 * 300.00262 * 4 3 2 33 33 H 0.97003 * 119.99445 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.47356 * 59.99653 * 16 14 5 35 35 H 1.09000 * 109.47349 * 300.00091 * 16 14 5 36 36 H 1.09003 * 109.47202 * 59.99663 * 17 16 14 37 37 H 1.09007 * 109.47083 * 300.00176 * 17 16 14 38 38 H 1.07998 * 122.53812 * 359.97438 * 19 18 17 39 39 H 1.09003 * 109.47071 * 270.19455 * 21 20 19 40 40 H 1.08999 * 109.47013 * 30.19124 * 21 20 19 41 41 H 1.08995 * 109.47659 * 150.19206 * 21 20 19 42 42 H 1.07991 * 125.20012 * 179.85908 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.3740 3.4387 -1.1838 7 1 4.1972 4.4970 -1.3065 8 6 4.9215 2.7004 -2.2260 9 7 5.5242 1.5594 -1.9771 10 14 4.8005 3.3296 -3.9807 11 1 5.9837 4.1730 -4.2867 12 1 4.7577 2.1783 -4.9175 13 1 3.5639 4.1376 -4.1326 14 6 4.1974 3.4897 1.1634 15 8 3.9178 2.9457 2.2109 16 6 4.7003 4.9103 1.1630 17 6 4.7638 5.4294 2.6008 18 6 5.2672 6.8498 2.6004 19 6 4.5000 7.9376 2.5143 20 6 5.1868 9.1392 2.5388 21 6 4.4899 10.4729 2.4584 22 6 6.5124 9.0270 2.6357 23 16 6.9563 7.3269 2.7138 24 1 -0.3632 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9287 0.8908 33 1 5.9067 1.0442 -2.7046 34 1 4.0229 5.5353 0.5811 35 1 5.6957 4.9433 0.7201 36 1 5.4409 4.8045 3.1832 37 1 3.7681 5.3966 3.0433 38 1 3.4242 7.8849 2.4353 39 1 4.3944 10.7706 1.4142 40 1 3.4991 10.3927 2.9054 41 1 5.0722 11.2202 2.9974 42 1 7.2065 9.8537 2.6662 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176182922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:08 Heat of formation + Delta-G solvation = -31.730978 kcal Electronic energy + Delta-G solvation = -21297.303749 eV Core-core repulsion = 18175.068649 eV Total energy + Delta-G solvation = -3122.235100 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.76766 -38.10125 -35.46965 -33.92586 -33.45573 -31.49259 -29.80588 -28.37992 -27.25978 -24.99063 -24.58114 -22.43723 -20.90349 -20.31054 -19.01546 -18.78546 -16.99664 -16.64596 -15.81882 -15.07526 -14.73708 -14.50015 -14.34496 -14.23252 -13.86678 -13.47321 -13.07710 -12.94217 -12.62500 -12.43250 -12.20335 -12.12085 -11.96015 -11.67553 -11.51608 -11.30693 -11.25870 -11.16018 -10.85619 -10.66817 -10.55939 -10.46844 -10.35303 -10.27708 -10.14403 -9.70246 -9.09254 -8.54296 -8.29881 -8.13346 -7.51671 -6.38969 -4.05847 1.18040 1.83245 2.20688 2.83979 3.09326 3.19870 3.23614 3.91765 4.09998 4.69482 4.94436 5.05140 5.09467 5.35709 5.46892 5.50025 5.56156 5.58191 5.66109 5.68671 5.72408 5.80462 5.91379 6.08924 6.18386 6.24890 6.26064 6.33368 6.41692 6.48402 6.53482 6.57030 6.65021 6.71692 6.75309 6.77238 6.86356 7.15365 7.36726 7.51128 7.93177 8.37231 9.06748 9.52875 9.96264 10.61996 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013928 B = 0.004097 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.812541 B = 6832.445865 C = 7847.454428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.113 3.887 5 N -0.437 5.437 6 C -0.339 4.339 7 H 0.090 0.910 8 C 0.044 3.956 9 N -0.857 5.857 10 Si 0.910 3.090 11 H -0.276 1.276 12 H -0.281 1.281 13 H -0.269 1.269 14 C 0.467 3.533 15 O -0.609 6.609 16 C -0.111 4.111 17 C -0.035 4.035 18 C -0.147 4.147 19 C -0.150 4.150 20 C -0.098 4.098 21 C -0.092 4.092 22 C -0.233 4.233 23 S 0.091 5.909 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.050 0.950 33 H 0.269 0.731 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.138 0.862 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 9.702 4.294 10.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.010 4.010 5 N -0.154 5.154 6 C -0.467 4.467 7 H 0.107 0.893 8 C -0.162 4.162 9 N -0.494 5.494 10 Si 0.737 3.263 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.256 3.744 15 O -0.496 6.496 16 C -0.152 4.152 17 C -0.075 4.075 18 C -0.264 4.264 19 C -0.179 4.179 20 C -0.111 4.111 21 C -0.152 4.152 22 C -0.369 4.369 23 S 0.356 5.644 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.156 0.844 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.576 8.470 4.794 9.750 hybrid contribution -1.196 1.083 -1.255 2.043 sum -1.771 9.553 3.539 10.340 Atomic orbital electron populations 1.21757 0.96676 1.00649 1.01456 1.21431 0.94936 0.97805 1.01577 1.21901 0.98011 0.95433 1.01257 1.21440 0.91034 0.85014 1.03560 1.43478 1.55105 1.12009 1.04826 1.19418 1.41816 0.95390 0.90064 0.89268 1.25313 0.94250 0.96298 1.00337 1.69934 1.31609 1.14934 1.32901 0.86205 0.79020 0.78629 0.82492 1.20219 1.20673 1.19336 1.20359 0.81529 0.88785 0.83763 1.90517 1.56682 1.70688 1.31740 1.21339 1.03249 0.95156 0.95432 1.19962 1.02029 0.87547 0.97922 1.24708 0.95374 1.00013 1.06316 1.19976 1.01077 0.90677 1.06207 1.18887 0.92994 0.96301 1.02921 1.20491 0.99891 0.92693 1.02093 1.25325 0.98717 0.99405 1.13406 1.84324 1.07767 0.99461 1.72811 0.93069 0.93440 0.93089 0.92283 0.92422 0.92920 0.92433 0.87509 0.93115 0.92027 0.90239 0.89540 0.90418 0.89720 0.84444 0.91360 0.91600 0.91919 0.82459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -2.04 5.93 -26.73 -0.16 -2.20 16 3 C -0.13 -2.62 5.51 -26.73 -0.15 -2.77 16 4 C 0.11 2.71 4.92 -4.04 -0.02 2.69 16 5 N -0.44 -10.96 2.55 -114.81 -0.29 -11.26 16 6 C -0.34 -8.50 8.70 -14.94 -0.13 -8.63 16 7 H 0.09 2.14 6.98 -52.49 -0.37 1.78 16 8 C 0.04 1.10 4.94 -17.46 -0.09 1.01 16 9 N -0.86 -22.41 11.31 55.50 0.63 -21.79 16 10 Si 0.91 19.27 29.60 -169.99 -5.03 14.23 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 12 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 14 C 0.47 11.29 7.61 -10.99 -0.08 11.21 16 15 O -0.61 -15.89 15.64 5.54 0.09 -15.80 16 16 C -0.11 -2.23 4.34 -27.89 -0.12 -2.35 16 17 C -0.03 -0.61 5.00 -27.89 -0.14 -0.75 16 18 C -0.15 -2.27 5.76 -36.00 -0.21 -2.48 16 19 C -0.15 -2.11 9.85 -41.21 -0.41 -2.52 16 20 C -0.10 -1.24 5.80 -106.25 -0.62 -1.86 16 21 C -0.09 -0.87 10.14 36.00 0.36 -0.51 16 22 C -0.23 -2.90 10.98 29.04 0.32 -2.59 16 23 S 0.09 1.29 23.33 -107.50 -2.51 -1.22 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.11 2.70 5.34 -51.93 -0.28 2.43 16 32 H 0.05 1.27 7.56 -51.93 -0.39 0.88 16 33 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.08 1.52 7.65 -51.93 -0.40 1.12 16 35 H 0.09 1.78 8.10 -51.93 -0.42 1.36 16 36 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 37 H 0.08 1.48 8.10 -51.92 -0.42 1.06 16 38 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 41 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 42 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -28.25 360.76 -9.65 -37.90 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.90 Total: 5.98 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -1.06 Total: -13.49 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.33 Total: -33.04 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.09 Total: -15.80 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.23 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.51 Total: -1.22 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.25 -9.65 -37.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176182922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.169 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds