Wall clock time and date at job start Tue Mar 31 2020 07:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47511 * 2 1 4 4 C 1.52995 * 109.47236 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46780 * 179.97438 * 4 3 2 6 6 C 1.37085 * 120.00408 * 265.56041 * 5 4 3 7 7 H 1.08001 * 120.00203 * 145.67111 * 6 5 4 8 8 C 1.38959 * 120.00218 * 325.67230 * 6 5 4 9 9 N 1.31416 * 119.99675 * 338.41524 * 8 6 5 10 10 Si 1.86801 * 120.00064 * 158.40775 * 8 6 5 11 11 H 1.48493 * 109.47002 * 90.00376 * 10 8 6 12 12 H 1.48498 * 109.47110 * 210.00399 * 10 8 6 13 13 H 1.48500 * 109.47170 * 330.00074 * 10 8 6 14 14 C 1.34776 * 119.99599 * 85.56631 * 5 4 3 15 15 O 1.21297 * 119.99974 * 359.97438 * 14 5 4 16 16 C 1.50693 * 120.00121 * 179.97438 * 14 5 4 17 17 C 1.52999 * 109.47665 * 179.97438 * 16 14 5 18 18 C 1.50693 * 109.47665 * 179.97438 * 17 16 14 19 19 C 1.33395 * 125.20462 * 89.99723 * 18 17 16 20 20 C 1.38424 * 114.92155 * 179.75431 * 19 18 17 21 21 C 1.50697 * 122.54192 * 180.27435 * 20 19 18 22 22 C 1.33395 * 114.92075 * 0.42808 * 20 19 18 23 23 S 1.75884 * 109.59203 * 359.59855 * 22 20 19 24 24 H 1.09006 * 109.46446 * 60.00170 * 1 2 3 25 25 H 1.08998 * 109.46874 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47324 * 299.99970 * 1 2 3 27 27 H 1.09007 * 109.47309 * 239.99909 * 2 1 3 28 28 H 1.08999 * 109.47152 * 120.00276 * 2 1 3 29 29 H 1.09001 * 109.46308 * 60.00031 * 3 2 1 30 30 H 1.09006 * 109.46832 * 300.00137 * 3 2 1 31 31 H 1.09000 * 109.47033 * 60.00346 * 4 3 2 32 32 H 1.08999 * 109.47404 * 300.00262 * 4 3 2 33 33 H 0.97003 * 119.99445 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.47356 * 59.99653 * 16 14 5 35 35 H 1.09000 * 109.47349 * 300.00091 * 16 14 5 36 36 H 1.09003 * 109.47202 * 59.99663 * 17 16 14 37 37 H 1.09007 * 109.47083 * 300.00176 * 17 16 14 38 38 H 1.07998 * 122.53812 * 359.97438 * 19 18 17 39 39 H 1.09003 * 109.47071 * 270.19455 * 21 20 19 40 40 H 1.08999 * 109.47013 * 30.19124 * 21 20 19 41 41 H 1.08995 * 109.47659 * 150.19206 * 21 20 19 42 42 H 1.07991 * 125.20012 * 179.85908 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.3740 3.4387 -1.1838 7 1 4.1972 4.4970 -1.3065 8 6 4.9215 2.7004 -2.2260 9 7 5.5242 1.5594 -1.9771 10 14 4.8005 3.3296 -3.9807 11 1 5.9837 4.1730 -4.2867 12 1 4.7577 2.1783 -4.9175 13 1 3.5639 4.1376 -4.1326 14 6 4.1974 3.4897 1.1634 15 8 3.9178 2.9457 2.2109 16 6 4.7003 4.9103 1.1630 17 6 4.7638 5.4294 2.6008 18 6 5.2672 6.8498 2.6004 19 6 4.5000 7.9376 2.5143 20 6 5.1868 9.1392 2.5388 21 6 4.4899 10.4729 2.4584 22 6 6.5124 9.0270 2.6357 23 16 6.9563 7.3269 2.7138 24 1 -0.3632 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9287 0.8908 33 1 5.9067 1.0442 -2.7046 34 1 4.0229 5.5353 0.5811 35 1 5.6957 4.9433 0.7201 36 1 5.4409 4.8045 3.1832 37 1 3.7681 5.3966 3.0433 38 1 3.4242 7.8849 2.4353 39 1 4.3944 10.7706 1.4142 40 1 3.4991 10.3927 2.9054 41 1 5.0722 11.2202 2.9974 42 1 7.2065 9.8537 2.6662 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176182922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:07 Heat of formation + Delta-G solvation = -44.051844 kcal Electronic energy + Delta-G solvation = -21297.838022 eV Core-core repulsion = 18175.068649 eV Total energy + Delta-G solvation = -3122.769372 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.60121 -39.23182 -37.26395 -35.58287 -34.84114 -33.42391 -31.08075 -29.80497 -28.27762 -26.87281 -26.02666 -23.94988 -22.16837 -21.86189 -20.93332 -19.81780 -18.64913 -18.14192 -17.51599 -16.73565 -16.22576 -16.22046 -15.99333 -15.65698 -14.98955 -14.82753 -14.47016 -14.17370 -13.84700 -13.82119 -13.72394 -13.44168 -13.27046 -13.08888 -12.96865 -12.92972 -12.68310 -12.46182 -12.37792 -12.16778 -12.06545 -11.95603 -11.92103 -11.79091 -11.53531 -11.43217 -10.98960 -10.37555 -9.51550 -9.48207 -9.21086 -8.30965 -6.04748 0.09891 0.74054 1.15630 1.40592 1.47737 1.58814 1.79767 2.01837 2.31536 2.95225 3.08615 3.80722 4.07128 4.11745 4.15397 4.22771 4.23359 4.30541 4.40432 4.51197 4.55096 4.66446 4.78263 4.81376 4.84028 4.87233 4.89896 4.91285 4.99658 5.08446 5.14492 5.16792 5.18018 5.32740 5.36193 5.42901 5.45813 5.55126 5.58369 5.68989 6.00807 6.42382 7.11605 7.58780 8.02627 8.71146 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.013928 B = 0.004097 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.812541 B = 6832.445865 C = 7847.454428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.114 4.114 4 C 0.114 3.886 5 N -0.449 5.449 6 C -0.356 4.356 7 H 0.098 0.902 8 C 0.004 3.996 9 N -0.890 5.890 10 Si 0.979 3.021 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.260 1.260 14 C 0.451 3.549 15 O -0.636 6.636 16 C -0.098 4.098 17 C -0.021 4.021 18 C -0.176 4.176 19 C -0.142 4.142 20 C -0.109 4.109 21 C -0.090 4.090 22 C -0.220 4.220 23 S 0.070 5.930 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.054 0.946 31 H 0.094 0.906 32 H 0.027 0.973 33 H 0.272 0.728 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.147 0.853 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.745 11.753 3.320 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.153 4.153 4 C -0.010 4.010 5 N -0.166 5.166 6 C -0.483 4.483 7 H 0.116 0.884 8 C -0.199 4.199 9 N -0.527 5.527 10 Si 0.802 3.198 11 H -0.197 1.197 12 H -0.205 1.205 13 H -0.185 1.185 14 C 0.242 3.758 15 O -0.525 6.525 16 C -0.138 4.138 17 C -0.060 4.060 18 C -0.293 4.293 19 C -0.172 4.172 20 C -0.121 4.121 21 C -0.149 4.149 22 C -0.355 4.355 23 S 0.335 5.665 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.165 0.835 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.379 10.526 3.821 11.283 hybrid contribution -0.897 0.457 -0.903 1.353 sum -2.277 10.984 2.918 11.591 Atomic orbital electron populations 1.21708 0.94048 1.02376 1.01804 1.21415 0.97198 0.95143 1.01666 1.21762 0.95380 0.97804 1.00324 1.21413 0.93298 0.84667 1.01616 1.43770 1.55164 1.12326 1.05349 1.19742 1.42274 0.96016 0.90258 0.88432 1.26157 0.93417 0.96344 1.03953 1.70035 1.32339 1.16200 1.34173 0.85157 0.79233 0.78072 0.77314 1.19749 1.20503 1.18451 1.21104 0.81141 0.90370 0.83201 1.90481 1.57788 1.71699 1.32513 1.21236 1.02522 0.92631 0.97402 1.19691 1.01608 0.88925 0.95823 1.24454 0.96372 0.99058 1.09418 1.20271 1.01675 0.90928 1.04316 1.19218 0.93166 0.97136 1.02580 1.20557 1.00245 0.91109 1.02998 1.25698 0.99251 0.98686 1.11861 1.84375 1.07262 1.01563 1.73305 0.92531 0.91041 0.92955 0.92044 0.92535 0.94221 0.92708 0.88821 0.95407 0.91779 0.89178 0.90308 0.92033 0.90071 0.83493 0.90557 0.90819 0.90173 0.79641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.91 71.98 0.71 -3.10 16 2 C -0.12 -3.92 5.93 30.60 0.18 -3.74 16 3 C -0.11 -4.77 5.51 30.59 0.17 -4.60 16 4 C 0.11 5.65 4.92 86.38 0.42 6.08 16 5 N -0.45 -23.20 2.55 -635.54 -1.62 -24.82 16 6 C -0.36 -17.99 8.70 84.04 0.73 -17.26 16 7 H 0.10 4.67 6.98 -2.91 -0.02 4.65 16 8 C 0.00 0.22 4.94 84.93 0.42 0.64 16 9 N -0.89 -47.25 11.31 21.67 0.24 -47.01 16 10 Si 0.98 39.02 29.60 68.60 2.03 41.05 16 11 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 12 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 13 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 14 C 0.45 22.61 7.61 87.65 0.67 23.28 16 15 O -0.64 -34.53 15.64 -3.08 -0.05 -34.58 16 16 C -0.10 -3.99 4.34 29.85 0.13 -3.87 16 17 C -0.02 -0.75 5.00 29.85 0.15 -0.60 16 18 C -0.18 -5.41 5.76 24.59 0.14 -5.26 16 19 C -0.14 -3.79 9.85 21.22 0.21 -3.58 16 20 C -0.11 -2.47 5.80 -20.92 -0.12 -2.59 16 21 C -0.09 -1.40 10.14 71.23 0.72 -0.68 16 22 C -0.22 -4.93 10.98 66.72 0.73 -4.20 16 23 S 0.07 1.94 23.33 -56.49 -1.32 0.62 16 24 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 27 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.09 4.91 5.34 -2.39 -0.01 4.90 16 32 H 0.03 1.46 7.56 -2.39 -0.02 1.44 16 33 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 34 H 0.09 3.45 7.65 -2.39 -0.02 3.43 16 35 H 0.08 3.33 8.10 -2.39 -0.02 3.31 16 36 H 0.06 2.36 8.10 -2.39 -0.02 2.34 16 37 H 0.08 2.91 8.10 -2.38 -0.02 2.89 16 38 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 39 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 41 H 0.08 0.98 8.12 -2.39 -0.02 0.96 16 42 H 0.19 3.03 8.06 -2.92 -0.02 3.01 16 Total: -1.00 -61.63 360.76 5.54 -56.09 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.98 Total: 28.13 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: 5.27 Total: -19.49 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -1.38 Total: -71.83 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -0.05 Total: -34.58 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -1.32 Total: 0.62 kcal Total: -61.63 5.54 -56.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176182922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.038 kcal (2) G-P(sol) polarization free energy of solvation -61.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds