Wall clock time and date at job start Tue Mar 31 2020 08:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47220 * 2 1 4 4 H 1.08999 * 109.47266 * 304.89664 * 3 2 1 5 5 C 1.50697 * 109.47293 * 184.89434 * 3 2 1 6 6 H 1.08001 * 120.00613 * 245.44841 * 5 3 2 7 7 C 1.37879 * 119.99772 * 65.45530 * 5 3 2 8 8 N 1.31515 * 120.00084 * 9.46467 * 7 5 3 9 9 Si 1.86802 * 120.00284 * 189.46947 * 7 5 3 10 10 H 1.48501 * 109.47197 * 84.98955 * 9 7 5 11 11 H 1.48494 * 109.47318 * 204.99571 * 9 7 5 12 12 H 1.48506 * 109.46857 * 324.99275 * 9 7 5 13 13 N 1.46501 * 109.47183 * 64.89821 * 3 2 1 14 14 C 1.34775 * 120.00012 * 274.72804 * 13 3 2 15 15 O 1.21282 * 119.99984 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00430 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.47680 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47431 * 180.02562 * 17 16 14 19 19 C 1.52993 * 109.47411 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.47660 * 179.97438 * 19 18 17 21 21 C 1.33390 * 125.20047 * 89.99199 * 20 19 18 22 22 C 1.38431 * 114.91941 * 179.97438 * 21 20 19 23 23 C 1.33390 * 114.91558 * 359.97438 * 22 21 20 24 24 S 1.75875 * 125.20231 * 269.69473 * 20 19 18 25 25 H 1.08994 * 109.46980 * 60.00390 * 1 2 3 26 26 H 1.09005 * 109.47027 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47303 * 300.00296 * 1 2 3 28 28 H 1.09000 * 109.47746 * 239.99442 * 2 1 3 29 29 H 1.09005 * 109.47031 * 120.00120 * 2 1 3 30 30 H 0.96997 * 119.99966 * 179.97438 * 8 7 5 31 31 H 0.96998 * 120.00534 * 94.99581 * 13 3 2 32 32 H 1.09001 * 109.47404 * 299.99927 * 16 14 13 33 33 H 1.09005 * 109.46944 * 59.99598 * 16 14 13 34 34 H 1.09001 * 109.46855 * 300.00524 * 17 16 14 35 35 H 1.09001 * 109.46559 * 60.00021 * 17 16 14 36 36 H 1.09013 * 109.46995 * 300.00151 * 18 17 16 37 37 H 1.08996 * 109.47262 * 59.99650 * 18 17 16 38 38 H 1.09006 * 109.46978 * 300.00206 * 19 18 17 39 39 H 1.08996 * 109.47541 * 59.99396 * 19 18 17 40 40 H 1.07994 * 122.54420 * 359.96340 * 21 20 19 41 41 H 1.07992 * 122.54122 * 180.02562 * 22 21 20 42 42 H 1.08002 * 125.19922 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9810 -0.8429 5 6 3.5421 1.4442 -0.1212 6 1 4.1493 1.8091 0.6940 7 6 4.1413 0.9801 -1.2730 8 7 3.4098 0.7114 -2.3324 9 14 5.9920 0.7327 -1.3287 10 1 6.3291 -0.6067 -0.7832 11 1 6.4620 0.8275 -2.7341 12 1 6.6563 1.7809 -0.5130 13 7 1.6504 2.0982 1.2508 14 6 0.4350 2.6700 1.3617 15 8 -0.3360 2.6421 0.4259 16 6 0.0339 3.3440 2.6484 17 6 -1.3821 3.9069 2.5097 18 6 -1.7890 4.5918 3.8158 19 6 -3.2051 5.1540 3.6773 20 6 -3.6063 5.8281 4.9640 21 6 -3.4012 7.1136 5.2551 22 6 -3.8571 7.5095 6.5007 23 6 -4.4329 6.5456 7.2209 24 16 -4.4230 5.0418 6.3087 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8935 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8314 0.3852 -3.1428 31 1 2.2685 2.1243 1.9978 32 1 0.0588 2.6187 3.4617 33 1 0.7278 4.1564 2.8647 34 1 -1.4066 4.6323 1.6964 35 1 -2.0762 3.0948 2.2932 36 1 -1.7644 3.8665 4.6294 37 1 -1.0948 5.4038 4.0319 38 1 -3.2302 5.8790 2.8637 39 1 -3.8991 4.3417 3.4614 40 1 -2.9160 7.7939 4.5709 41 1 -3.7551 8.5222 6.8617 42 1 -4.8455 6.6704 8.2111 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177493721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:32 Heat of formation + Delta-G solvation = -39.200685 kcal Electronic energy + Delta-G solvation = -20634.211980 eV Core-core repulsion = 17511.652970 eV Total energy + Delta-G solvation = -3122.559010 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.05956 -38.24142 -35.71352 -34.80102 -32.35501 -31.88099 -30.84612 -28.34367 -26.90364 -25.06411 -23.22480 -22.63576 -21.23153 -20.06254 -19.46146 -19.25222 -17.29201 -16.96109 -15.91793 -15.60622 -15.56171 -15.22737 -14.49051 -14.26348 -13.72812 -13.51692 -13.28387 -12.99474 -12.82494 -12.68018 -12.39434 -12.23507 -11.82694 -11.46982 -11.45382 -11.25840 -11.13994 -11.09660 -10.98515 -10.88158 -10.75931 -10.51294 -10.32670 -10.16607 -9.67544 -9.08783 -8.92545 -8.79150 -8.71108 -8.46307 -7.78462 -6.13436 -4.18647 0.77087 1.40632 1.77933 2.51583 3.25336 3.32152 3.33359 3.50276 4.13337 4.38180 4.57923 4.80337 4.87138 4.94804 5.13355 5.19417 5.29596 5.36420 5.40133 5.53564 5.58935 5.72021 5.80644 5.91967 5.96973 6.00641 6.08006 6.25039 6.33865 6.36190 6.40325 6.46940 6.61620 7.00316 7.18841 7.34938 7.47036 7.64009 7.73974 7.87620 8.10321 8.73983 8.82293 9.21790 9.47828 10.94768 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.034982 B = 0.002303 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.218151 B =12153.121530 C =12516.895261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.712 5.712 14 C 0.498 3.502 15 O -0.551 6.551 16 C -0.143 4.143 17 C -0.101 4.101 18 C -0.113 4.113 19 C -0.052 4.052 20 C -0.161 4.161 21 C -0.148 4.148 22 C -0.131 4.131 23 C -0.223 4.223 24 S 0.091 5.909 25 H 0.051 0.949 26 H 0.022 0.978 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.264 0.736 31 H 0.387 0.613 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.988 9.768 17.409 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.166 3.834 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.724 3.276 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.359 5.359 14 C 0.283 3.717 15 O -0.431 6.431 16 C -0.183 4.183 17 C -0.139 4.139 18 C -0.151 4.151 19 C -0.092 4.092 20 C -0.279 4.279 21 C -0.178 4.178 22 C -0.162 4.162 23 C -0.358 4.358 24 S 0.355 5.645 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.219 0.781 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.040 8.209 16.810 23.390 hybrid contribution 1.870 1.279 0.169 2.272 sum -12.170 9.488 16.979 22.944 Atomic orbital electron populations 1.21831 0.98054 0.98072 1.01503 1.21845 0.92968 0.99983 1.01062 1.18762 0.94229 0.88877 0.81579 0.92710 1.21193 0.90701 1.43892 1.01733 0.92161 1.24895 0.98420 0.95206 0.95019 1.69985 1.35720 1.43837 1.02131 0.86542 0.85092 0.78703 0.77241 1.20438 1.21189 1.19938 1.46503 1.15016 1.55997 1.18398 1.20441 0.82624 0.79282 0.89315 1.90659 1.51661 1.60134 1.40614 1.21690 0.98431 1.01039 0.97151 1.21300 0.95356 1.00603 0.96677 1.21639 0.94931 1.00176 0.98388 1.20231 0.97399 0.99871 0.91652 1.24644 1.05274 0.97409 1.00537 1.20157 1.04267 0.95459 0.97919 1.20181 1.00928 1.00451 0.94627 1.25584 1.09389 0.96228 1.04606 1.84357 1.57905 1.12941 1.09342 0.93006 0.95861 0.94009 0.90341 0.94800 0.92583 0.78096 0.89794 0.89683 0.91098 0.91209 0.91851 0.91609 0.89699 0.90568 0.84288 0.84474 0.82137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.52 37.16 0.32 -2.72 16 2 C -0.12 -2.87 5.50 -26.73 -0.15 -3.02 16 3 C 0.27 6.71 2.11 -69.09 -0.15 6.57 16 4 H 0.06 1.62 7.51 -51.93 -0.39 1.23 16 5 C -0.54 -14.19 8.66 -34.44 -0.30 -14.49 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.85 5.16 -17.82 -0.09 1.75 16 8 N -0.88 -25.00 12.16 55.43 0.67 -24.33 16 9 Si 0.90 20.63 29.55 -169.99 -5.02 15.61 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.71 -14.52 5.02 -54.94 -0.28 -14.79 16 14 C 0.50 9.53 6.39 -10.99 -0.07 9.46 16 15 O -0.55 -12.55 13.16 5.56 0.07 -12.48 16 16 C -0.14 -1.92 5.70 -27.88 -0.16 -2.08 16 17 C -0.10 -1.26 4.50 -26.73 -0.12 -1.38 16 18 C -0.11 -1.11 5.20 -26.74 -0.14 -1.25 16 19 C -0.05 -0.48 5.71 -27.89 -0.16 -0.64 16 20 C -0.16 -1.53 5.76 -36.00 -0.21 -1.73 16 21 C -0.15 -1.33 10.05 -41.20 -0.41 -1.74 16 22 C -0.13 -1.07 10.18 -41.20 -0.42 -1.49 16 23 C -0.22 -1.79 11.23 29.04 0.33 -1.46 16 24 S 0.09 0.82 23.33 -107.50 -2.51 -1.69 16 25 H 0.05 1.23 7.85 -51.93 -0.41 0.82 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.04 0.89 5.67 -51.93 -0.29 0.60 16 28 H 0.08 2.08 6.80 -51.93 -0.35 1.72 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.39 6.84 8.53 -40.82 -0.35 6.50 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -30.31 357.11 -10.23 -40.54 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.83 Total: 5.98 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -1.73 Total: -14.22 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.40 Total: -39.12 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.07 Total: -12.48 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.69 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.31 -10.23 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177493721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.344 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds