Wall clock time and date at job start Tue Mar 31 2020 08:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47220 * 2 1 4 4 H 1.08999 * 109.47266 * 304.89664 * 3 2 1 5 5 C 1.50697 * 109.47293 * 184.89434 * 3 2 1 6 6 H 1.08001 * 120.00613 * 245.44841 * 5 3 2 7 7 C 1.37879 * 119.99772 * 65.45530 * 5 3 2 8 8 N 1.31515 * 120.00084 * 9.46467 * 7 5 3 9 9 Si 1.86802 * 120.00284 * 189.46947 * 7 5 3 10 10 H 1.48501 * 109.47197 * 84.98955 * 9 7 5 11 11 H 1.48494 * 109.47318 * 204.99571 * 9 7 5 12 12 H 1.48506 * 109.46857 * 324.99275 * 9 7 5 13 13 N 1.46501 * 109.47183 * 64.89821 * 3 2 1 14 14 C 1.34775 * 120.00012 * 274.72804 * 13 3 2 15 15 O 1.21282 * 119.99984 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00430 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.47680 * 179.97438 * 16 14 13 18 18 C 1.52994 * 109.47431 * 180.02562 * 17 16 14 19 19 C 1.52993 * 109.47411 * 180.02562 * 18 17 16 20 20 C 1.50699 * 109.47660 * 179.97438 * 19 18 17 21 21 C 1.33390 * 125.20047 * 89.99199 * 20 19 18 22 22 C 1.38431 * 114.91941 * 179.97438 * 21 20 19 23 23 C 1.33390 * 114.91558 * 359.97438 * 22 21 20 24 24 S 1.75875 * 125.20231 * 269.69473 * 20 19 18 25 25 H 1.08994 * 109.46980 * 60.00390 * 1 2 3 26 26 H 1.09005 * 109.47027 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47303 * 300.00296 * 1 2 3 28 28 H 1.09000 * 109.47746 * 239.99442 * 2 1 3 29 29 H 1.09005 * 109.47031 * 120.00120 * 2 1 3 30 30 H 0.96997 * 119.99966 * 179.97438 * 8 7 5 31 31 H 0.96998 * 120.00534 * 94.99581 * 13 3 2 32 32 H 1.09001 * 109.47404 * 299.99927 * 16 14 13 33 33 H 1.09005 * 109.46944 * 59.99598 * 16 14 13 34 34 H 1.09001 * 109.46855 * 300.00524 * 17 16 14 35 35 H 1.09001 * 109.46559 * 60.00021 * 17 16 14 36 36 H 1.09013 * 109.46995 * 300.00151 * 18 17 16 37 37 H 1.08996 * 109.47262 * 59.99650 * 18 17 16 38 38 H 1.09006 * 109.46978 * 300.00206 * 19 18 17 39 39 H 1.08996 * 109.47541 * 59.99396 * 19 18 17 40 40 H 1.07994 * 122.54420 * 359.96340 * 21 20 19 41 41 H 1.07992 * 122.54122 * 180.02562 * 22 21 20 42 42 H 1.08002 * 125.19922 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9810 -0.8429 5 6 3.5421 1.4442 -0.1212 6 1 4.1493 1.8091 0.6940 7 6 4.1413 0.9801 -1.2730 8 7 3.4098 0.7114 -2.3324 9 14 5.9920 0.7327 -1.3287 10 1 6.3291 -0.6067 -0.7832 11 1 6.4620 0.8275 -2.7341 12 1 6.6563 1.7809 -0.5130 13 7 1.6504 2.0982 1.2508 14 6 0.4350 2.6700 1.3617 15 8 -0.3360 2.6421 0.4259 16 6 0.0339 3.3440 2.6484 17 6 -1.3821 3.9069 2.5097 18 6 -1.7890 4.5918 3.8158 19 6 -3.2051 5.1540 3.6773 20 6 -3.6063 5.8281 4.9640 21 6 -3.4012 7.1136 5.2551 22 6 -3.8571 7.5095 6.5007 23 6 -4.4329 6.5456 7.2209 24 16 -4.4230 5.0418 6.3087 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8935 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8314 0.3852 -3.1428 31 1 2.2685 2.1243 1.9978 32 1 0.0588 2.6187 3.4617 33 1 0.7278 4.1564 2.8647 34 1 -1.4066 4.6323 1.6964 35 1 -2.0762 3.0948 2.2932 36 1 -1.7644 3.8665 4.6294 37 1 -1.0948 5.4038 4.0319 38 1 -3.2302 5.8790 2.8637 39 1 -3.8991 4.3417 3.4614 40 1 -2.9160 7.7939 4.5709 41 1 -3.7551 8.5222 6.8617 42 1 -4.8455 6.6704 8.2111 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177493721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:31 Heat of formation + Delta-G solvation = -55.803925 kcal Electronic energy + Delta-G solvation = -20634.931951 eV Core-core repulsion = 17511.652970 eV Total energy + Delta-G solvation = -3123.278981 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.65037 -38.90840 -37.11613 -36.15331 -34.25199 -33.18716 -32.33340 -29.46282 -28.55223 -26.05292 -24.88006 -23.66660 -22.28414 -21.64430 -20.97164 -20.08512 -18.80996 -17.90940 -17.30762 -17.15037 -16.84997 -16.35591 -16.03244 -15.72506 -14.92122 -14.63888 -14.50554 -14.17632 -14.08752 -13.72042 -13.47193 -13.35318 -13.28918 -13.08148 -12.92449 -12.84607 -12.60351 -12.30984 -12.18195 -12.05974 -12.00826 -11.98679 -11.63009 -11.58126 -11.38975 -11.08058 -10.56828 -10.45785 -9.57033 -9.49963 -9.36855 -8.18854 -6.31800 0.13004 0.76618 1.14910 1.44257 1.45429 1.54830 1.88827 1.97857 2.38209 2.76150 3.12603 3.77164 3.98242 4.05426 4.16563 4.29085 4.36640 4.46884 4.53273 4.54498 4.65396 4.70796 4.74089 4.81696 4.85106 4.92536 4.95276 5.07510 5.15742 5.24400 5.25925 5.38606 5.43167 5.45601 5.50380 5.55701 5.65202 5.65660 5.76468 5.97481 6.10127 6.78355 7.08832 7.35317 7.69854 8.89811 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.034982 B = 0.002303 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.218151 B =12153.121530 C =12516.895261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 C 0.275 3.725 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.918 5.918 9 Si 0.967 3.033 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.710 5.710 14 C 0.491 3.509 15 O -0.593 6.593 16 C -0.130 4.130 17 C -0.096 4.096 18 C -0.101 4.101 19 C -0.051 4.051 20 C -0.177 4.177 21 C -0.153 4.153 22 C -0.141 4.141 23 C -0.221 4.221 24 S 0.074 5.926 25 H 0.023 0.977 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.264 0.736 31 H 0.403 0.597 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.149 0.851 41 H 0.158 0.842 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.329 10.446 20.063 25.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.152 4.152 3 C 0.171 3.829 4 H 0.018 0.982 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.792 3.208 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.359 5.359 14 C 0.279 3.721 15 O -0.474 6.474 16 C -0.170 4.170 17 C -0.134 4.134 18 C -0.139 4.139 19 C -0.090 4.090 20 C -0.294 4.294 21 C -0.183 4.183 22 C -0.171 4.171 23 C -0.356 4.356 24 S 0.337 5.663 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.238 0.762 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.167 0.833 41 H 0.175 0.825 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -13.377 8.900 19.513 25.277 hybrid contribution 1.598 1.125 -0.654 2.061 sum -11.779 10.026 18.859 24.391 Atomic orbital electron populations 1.21667 0.96645 0.99268 1.00468 1.21699 0.94133 0.99150 1.00202 1.18331 0.93576 0.89039 0.81982 0.98240 1.21571 0.91526 1.43541 1.02062 0.91003 1.25797 1.03196 0.94886 0.94626 1.70139 1.37781 1.44896 1.02773 0.85437 0.79266 0.79038 0.77077 1.19588 1.21468 1.18759 1.46309 1.16123 1.56136 1.17352 1.21471 0.81439 0.78350 0.90798 1.90648 1.52683 1.61409 1.42708 1.21700 0.99211 1.01860 0.94193 1.21239 0.94568 0.99901 0.97740 1.21510 0.95361 1.00281 0.96723 1.20176 0.97041 0.99853 0.91916 1.24669 1.06244 0.97806 1.00668 1.20419 1.03924 0.95442 0.98480 1.20451 1.00770 1.01523 0.94362 1.25901 1.08925 0.95432 1.05344 1.84398 1.58229 1.13971 1.09740 0.95731 0.93423 0.93289 0.93291 0.93319 0.92689 0.76215 0.87009 0.87240 0.92664 0.92653 0.91205 0.90716 0.89542 0.90908 0.83338 0.82475 0.80068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.52 71.98 0.61 -4.88 16 2 C -0.11 -5.49 5.50 30.59 0.17 -5.32 16 3 C 0.27 14.07 2.11 44.24 0.09 14.16 16 4 H 0.00 -0.02 7.51 -2.39 -0.02 -0.04 16 5 C -0.55 -29.07 8.66 25.60 0.22 -28.85 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.02 0.83 5.16 84.65 0.44 1.26 16 8 N -0.92 -53.67 12.16 21.45 0.26 -53.40 16 9 Si 0.97 42.20 29.55 68.60 2.03 44.22 16 10 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 11 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 13 N -0.71 -28.62 5.02 -446.11 -2.24 -30.86 16 14 C 0.49 18.58 6.39 87.66 0.56 19.14 16 15 O -0.59 -27.66 13.16 -3.04 -0.04 -27.70 16 16 C -0.13 -3.20 5.70 29.85 0.17 -3.03 16 17 C -0.10 -2.28 4.50 30.59 0.14 -2.15 16 18 C -0.10 -1.77 5.20 30.59 0.16 -1.61 16 19 C -0.05 -0.88 5.71 29.85 0.17 -0.71 16 20 C -0.18 -3.10 5.76 24.59 0.14 -2.96 16 21 C -0.15 -2.46 10.05 21.22 0.21 -2.24 16 22 C -0.14 -1.99 10.18 21.22 0.22 -1.77 16 23 C -0.22 -3.09 11.23 66.72 0.75 -2.34 16 24 S 0.07 1.22 23.33 -56.49 -1.32 -0.10 16 25 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 26 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.05 2.08 5.67 -2.39 -0.01 2.07 16 28 H 0.05 2.66 6.80 -2.39 -0.02 2.65 16 29 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.40 13.55 8.53 -92.71 -0.79 12.76 16 32 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 34 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 35 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 36 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -67.48 357.11 2.95 -64.53 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.21 Total: 24.61 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 4.05 Total: -21.30 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -1.98 Total: -84.26 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.04 Total: -27.70 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -1.32 Total: -0.10 kcal Total: -67.48 2.95 -64.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177493721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.727 kcal (2) G-P(sol) polarization free energy of solvation -67.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds