Wall clock time and date at job start Tue Mar 31 2020 08:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46989 * 2 1 4 4 C 1.53001 * 109.46744 * 240.00237 * 2 1 3 5 5 O 1.42900 * 109.47269 * 120.00238 * 2 1 3 6 6 C 1.42904 * 113.99860 * 59.99800 * 5 2 1 7 7 C 1.50701 * 109.46779 * 179.97438 * 6 5 2 8 8 O 1.21290 * 120.00210 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99953 * 179.97438 * 7 6 5 10 10 C 1.40001 * 120.00042 * 175.45042 * 9 7 6 11 11 C 1.39367 * 119.91516 * 325.90179 * 10 9 7 12 12 C 1.38357 * 120.47584 * 180.02562 * 11 10 9 13 13 C 1.38010 * 120.28647 * 359.97438 * 12 11 10 14 14 F 1.35099 * 120.09821 * 179.97438 * 13 12 11 15 15 C 1.41011 * 119.81066 * 359.97438 * 13 12 11 16 16 C 1.41291 * 120.22941 * 179.97438 * 15 13 12 17 17 H 1.08009 * 119.99922 * 334.90038 * 16 15 13 18 18 C 1.39921 * 120.00408 * 155.18081 * 16 15 13 19 19 N 1.30853 * 120.00418 * 160.46749 * 18 16 15 20 20 Si 1.86797 * 119.99919 * 340.46717 * 18 16 15 21 21 H 1.48498 * 109.47238 * 95.24783 * 20 18 16 22 22 H 1.48497 * 109.47270 * 215.25143 * 20 18 16 23 23 H 1.48502 * 109.46895 * 335.25308 * 20 18 16 24 24 C 1.38152 * 119.91057 * 146.13332 * 10 9 7 25 25 H 1.09004 * 109.46912 * 299.99704 * 1 2 3 26 26 H 1.09001 * 109.47424 * 59.99844 * 1 2 3 27 27 H 1.08999 * 109.47285 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46881 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47164 * 300.00314 * 3 2 1 30 30 H 1.08996 * 109.47290 * 60.00470 * 3 2 1 31 31 H 1.09000 * 109.47187 * 299.99506 * 4 2 1 32 32 H 1.09001 * 109.47227 * 59.99798 * 4 2 1 33 33 H 1.09006 * 109.47007 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.47210 * 60.00260 * 6 5 2 35 35 H 1.08999 * 109.47218 * 299.99920 * 6 5 2 36 36 H 0.97000 * 119.99856 * 355.45321 * 9 7 6 37 37 H 1.07999 * 119.75863 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.86240 * 179.97438 * 12 11 10 39 39 H 0.96999 * 120.00156 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.13857 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1667 6 6 1.5847 -2.0356 1.2644 7 6 2.1421 -2.6448 2.5250 8 8 2.8322 -1.9782 3.2671 9 7 1.8730 -3.9301 2.8285 10 6 2.4673 -4.5242 3.9483 11 6 3.7598 -4.1623 4.3233 12 6 4.3585 -4.7425 5.4275 13 6 3.6804 -5.6870 6.1710 14 9 4.2688 -6.2514 7.2482 15 6 2.3716 -6.0614 5.8030 16 6 1.6695 -7.0279 6.5575 17 1 2.2129 -7.7618 7.1343 18 6 0.2704 -7.0379 6.5529 19 7 -0.3774 -8.1161 6.9136 20 14 -0.6729 -5.5122 6.0317 21 1 -1.0258 -5.6158 4.5929 22 1 -1.9141 -5.3978 6.8388 23 1 0.1715 -4.3100 6.2489 24 6 1.7726 -5.4712 4.6758 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6765 -0.2074 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 1.9491 -2.5916 0.4007 35 1 0.4958 -2.0778 1.2907 36 1 1.2676 -4.4435 2.2710 37 1 4.2983 -3.4244 3.7473 38 1 5.3607 -4.4549 5.7090 39 1 -1.3474 -8.1232 6.9100 40 1 0.7726 -5.7542 4.3822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180323435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:12 Heat of formation + Delta-G solvation = -112.407644 kcal Electronic energy + Delta-G solvation = -23538.447868 eV Core-core repulsion = 19846.501189 eV Total energy + Delta-G solvation = -3691.946678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.35284 -40.12370 -38.93690 -37.25619 -34.41259 -33.62983 -33.46298 -30.63471 -29.42741 -27.91038 -27.72542 -26.67922 -25.27572 -22.07492 -21.61154 -20.17905 -19.85326 -17.68869 -17.53299 -16.80409 -16.47392 -16.05936 -15.73989 -15.24265 -14.84977 -14.74778 -14.45060 -14.14228 -13.72369 -13.59913 -13.38145 -13.20766 -12.80780 -12.51224 -12.31427 -12.26051 -12.09122 -12.02572 -11.96048 -11.82675 -11.56946 -11.39517 -10.92830 -10.87027 -10.67798 -10.26487 -9.86022 -9.79760 -9.56010 -9.25490 -9.17826 -7.87322 -7.14353 -7.11058 -4.61126 2.14579 2.46512 2.85127 2.88489 3.00004 3.15046 3.24947 3.85633 3.92659 4.33248 4.49345 4.53458 4.70697 4.83295 4.95000 5.04682 5.18753 5.21177 5.26079 5.41197 5.42939 5.54932 5.56111 5.70826 5.72794 5.85866 5.95856 5.98130 6.25939 6.37316 6.43825 6.56852 6.92579 6.95899 7.22969 7.33875 7.46533 7.48059 7.80964 7.96753 8.20185 8.39284 8.53730 8.60775 9.89973 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.020546 B = 0.003961 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.500639 B = 7066.383681 C = 8043.217081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.349 6.349 6 C 0.040 3.960 7 C 0.507 3.493 8 O -0.498 6.498 9 N -0.670 5.670 10 C 0.174 3.826 11 C -0.215 4.215 12 C -0.097 4.097 13 C -0.019 4.019 14 F -0.157 7.157 15 C 0.081 3.919 16 C -0.431 4.431 17 H 0.098 0.902 18 C 0.085 3.915 19 N -0.794 5.794 20 Si 0.914 3.086 21 H -0.271 1.271 22 H -0.289 1.289 23 H -0.241 1.241 24 C -0.252 4.252 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.404 0.596 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.288 0.712 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.870 11.883 -15.992 20.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.064 3.936 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.267 6.267 6 C -0.040 4.040 7 C 0.293 3.707 8 O -0.371 6.371 9 N -0.316 5.316 10 C 0.082 3.918 11 C -0.236 4.236 12 C -0.117 4.117 13 C -0.040 4.040 14 F -0.136 7.136 15 C 0.077 3.923 16 C -0.459 4.459 17 H 0.116 0.884 18 C -0.136 4.136 19 N -0.417 5.417 20 Si 0.740 3.260 21 H -0.198 1.198 22 H -0.217 1.217 23 H -0.164 1.164 24 C -0.273 4.273 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.238 0.762 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.443 12.298 -15.228 19.627 hybrid contribution -1.063 -0.094 -0.548 1.200 sum -2.506 12.204 -15.776 20.103 Atomic orbital electron populations 1.22468 0.95656 1.02646 1.03088 1.21593 0.93223 0.93496 0.85263 1.21737 1.02208 0.92956 1.02479 1.22462 1.02524 1.00966 0.97835 1.88119 1.73959 1.21810 1.42846 1.22216 0.99824 0.85419 0.96501 1.20260 0.81689 0.81702 0.87081 1.90748 1.36412 1.60247 1.49657 1.43396 1.47845 1.11826 1.28569 1.17378 0.92023 0.94843 0.87601 1.20125 0.94477 1.06983 1.02007 1.20474 0.98894 0.96675 0.95640 1.17715 0.94965 1.01693 0.89590 1.91306 1.83887 1.84557 1.53838 1.17402 0.90940 0.92122 0.91867 1.19441 0.91306 1.11124 1.24009 0.88437 1.26194 0.98223 0.97333 0.91822 1.69698 1.10609 1.27533 1.33866 0.86295 0.78246 0.83464 0.77973 1.19766 1.21656 1.16391 1.20478 1.00630 1.07062 0.99148 0.91435 0.91350 0.92126 0.91601 0.91108 0.91598 0.92125 0.91365 0.91444 0.90018 0.90193 0.76200 0.86577 0.87118 0.90098 0.87211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 8.25 37.16 0.31 -1.13 16 2 C 0.10 0.98 1.14 -90.62 -0.10 0.88 16 3 C -0.14 -1.16 8.84 37.16 0.33 -0.83 16 4 C -0.18 -1.39 8.25 37.16 0.31 -1.08 16 5 O -0.35 -4.73 9.52 -55.14 -0.52 -5.25 16 6 C 0.04 0.49 5.62 36.01 0.20 0.69 16 7 C 0.51 8.61 7.65 -10.98 -0.08 8.53 16 8 O -0.50 -10.69 14.20 -14.36 -0.20 -10.90 16 9 N -0.67 -11.39 5.34 -9.89 -0.05 -11.44 16 10 C 0.17 3.74 6.26 -83.74 -0.52 3.21 16 11 C -0.21 -4.75 8.66 -39.12 -0.34 -5.09 16 12 C -0.10 -2.18 10.00 -39.62 -0.40 -2.58 16 13 C -0.02 -0.48 7.31 -38.61 -0.28 -0.76 16 14 F -0.16 -3.92 16.71 2.25 0.04 -3.88 16 15 C 0.08 2.08 5.22 -106.78 -0.56 1.52 16 16 C -0.43 -11.69 9.30 -37.79 -0.35 -12.04 16 17 H 0.10 2.81 7.89 -52.48 -0.41 2.40 16 18 C 0.09 2.18 5.41 -17.34 -0.09 2.09 16 19 N -0.79 -20.56 13.93 55.55 0.77 -19.79 16 20 Si 0.91 20.31 24.43 -169.99 -4.15 16.16 16 21 H -0.27 -5.57 6.64 56.52 0.38 -5.19 16 22 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.24 -5.70 6.80 56.52 0.38 -5.31 16 24 C -0.25 -5.86 7.08 -38.71 -0.27 -6.14 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.43 6.54 -51.93 -0.34 0.09 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.77 6.42 -51.93 -0.33 0.44 16 35 H 0.08 0.78 6.42 -51.93 -0.33 0.45 16 36 H 0.40 5.29 8.82 -40.82 -0.36 4.93 16 37 H 0.12 2.52 6.43 -52.49 -0.34 2.18 16 38 H 0.11 2.20 8.06 -52.49 -0.42 1.77 16 39 H 0.29 6.69 8.30 -40.82 -0.34 6.35 16 40 H 0.11 2.46 4.19 -52.49 -0.22 2.24 16 LS Contribution 330.24 15.07 4.98 4.98 Total: -1.00 -31.34 330.24 -6.24 -37.58 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.24 Total: 5.28 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -1.86 Total: -12.73 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.72 Total: -31.23 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.73 Total: -16.15 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.04 Total: -3.88 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.15 Total: 16.16 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.34 -6.24 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180323435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.826 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds