Wall clock time and date at job start Tue Mar 31 2020 08:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46989 * 2 1 4 4 C 1.53001 * 109.46744 * 240.00237 * 2 1 3 5 5 O 1.42900 * 109.47269 * 120.00238 * 2 1 3 6 6 C 1.42904 * 113.99860 * 59.99800 * 5 2 1 7 7 C 1.50701 * 109.46779 * 179.97438 * 6 5 2 8 8 O 1.21290 * 120.00210 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99953 * 179.97438 * 7 6 5 10 10 C 1.40001 * 120.00042 * 175.45042 * 9 7 6 11 11 C 1.39367 * 119.91516 * 325.90179 * 10 9 7 12 12 C 1.38357 * 120.47584 * 180.02562 * 11 10 9 13 13 C 1.38010 * 120.28647 * 359.97438 * 12 11 10 14 14 F 1.35099 * 120.09821 * 179.97438 * 13 12 11 15 15 C 1.41011 * 119.81066 * 359.97438 * 13 12 11 16 16 C 1.41291 * 120.22941 * 179.97438 * 15 13 12 17 17 H 1.08009 * 119.99922 * 334.90038 * 16 15 13 18 18 C 1.39921 * 120.00408 * 155.18081 * 16 15 13 19 19 N 1.30853 * 120.00418 * 160.46749 * 18 16 15 20 20 Si 1.86797 * 119.99919 * 340.46717 * 18 16 15 21 21 H 1.48498 * 109.47238 * 95.24783 * 20 18 16 22 22 H 1.48497 * 109.47270 * 215.25143 * 20 18 16 23 23 H 1.48502 * 109.46895 * 335.25308 * 20 18 16 24 24 C 1.38152 * 119.91057 * 146.13332 * 10 9 7 25 25 H 1.09004 * 109.46912 * 299.99704 * 1 2 3 26 26 H 1.09001 * 109.47424 * 59.99844 * 1 2 3 27 27 H 1.08999 * 109.47285 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46881 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47164 * 300.00314 * 3 2 1 30 30 H 1.08996 * 109.47290 * 60.00470 * 3 2 1 31 31 H 1.09000 * 109.47187 * 299.99506 * 4 2 1 32 32 H 1.09001 * 109.47227 * 59.99798 * 4 2 1 33 33 H 1.09006 * 109.47007 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.47210 * 60.00260 * 6 5 2 35 35 H 1.08999 * 109.47218 * 299.99920 * 6 5 2 36 36 H 0.97000 * 119.99856 * 355.45321 * 9 7 6 37 37 H 1.07999 * 119.75863 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.86240 * 179.97438 * 12 11 10 39 39 H 0.96999 * 120.00156 * 180.02562 * 19 18 16 40 40 H 1.07999 * 120.13857 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1667 6 6 1.5847 -2.0356 1.2644 7 6 2.1421 -2.6448 2.5250 8 8 2.8322 -1.9782 3.2671 9 7 1.8730 -3.9301 2.8285 10 6 2.4673 -4.5242 3.9483 11 6 3.7598 -4.1623 4.3233 12 6 4.3585 -4.7425 5.4275 13 6 3.6804 -5.6870 6.1710 14 9 4.2688 -6.2514 7.2482 15 6 2.3716 -6.0614 5.8030 16 6 1.6695 -7.0279 6.5575 17 1 2.2129 -7.7618 7.1343 18 6 0.2704 -7.0379 6.5529 19 7 -0.3774 -8.1161 6.9136 20 14 -0.6729 -5.5122 6.0317 21 1 -1.0258 -5.6158 4.5929 22 1 -1.9141 -5.3978 6.8388 23 1 0.1715 -4.3100 6.2489 24 6 1.7726 -5.4712 4.6758 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6765 -0.2074 -2.1393 33 1 3.1300 -0.7208 -1.2496 34 1 1.9491 -2.5916 0.4007 35 1 0.4958 -2.0778 1.2907 36 1 1.2676 -4.4435 2.2710 37 1 4.2983 -3.4244 3.7473 38 1 5.3607 -4.4549 5.7090 39 1 -1.3474 -8.1232 6.9100 40 1 0.7726 -5.7542 4.3822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180323435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:11 Heat of formation + Delta-G solvation = -132.482222 kcal Electronic energy + Delta-G solvation = -23539.318367 eV Core-core repulsion = 19846.501189 eV Total energy + Delta-G solvation = -3692.817177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.30036 -41.46972 -39.96250 -38.89037 -36.09998 -35.25012 -34.39711 -32.52424 -30.84379 -28.89570 -28.27175 -27.70794 -27.17351 -23.90040 -23.12163 -21.47043 -20.92219 -19.49385 -18.91513 -18.29437 -17.92201 -17.16860 -17.07629 -16.88467 -16.35315 -16.08060 -15.99330 -15.55391 -15.25001 -14.69667 -14.55782 -14.45347 -14.18647 -14.02961 -13.85216 -13.58710 -13.25906 -13.11445 -12.84944 -12.74907 -12.74109 -12.63850 -12.51494 -12.20431 -12.12692 -11.71245 -11.56776 -11.08212 -11.06118 -10.74948 -10.57644 -9.74836 -9.02994 -8.90157 -6.62413 0.39705 0.61254 1.17475 1.33301 1.45423 1.56807 1.73694 2.05331 2.47516 2.96333 3.26398 3.62098 3.84814 3.91379 3.96112 4.07873 4.10413 4.14912 4.24766 4.45352 4.56284 4.68227 4.68924 4.76055 4.82107 4.83496 4.83595 4.96274 4.96446 5.12538 5.18545 5.35381 5.39139 5.43873 5.56323 5.57184 5.67526 5.97998 6.13764 6.23807 6.51290 6.53732 6.62746 7.14758 8.05008 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.020546 B = 0.003961 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.500639 B = 7066.383681 C = 8043.217081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.095 3.905 3 C -0.139 4.139 4 C -0.178 4.178 5 O -0.385 6.385 6 C 0.049 3.951 7 C 0.505 3.495 8 O -0.548 6.548 9 N -0.660 5.660 10 C 0.181 3.819 11 C -0.211 4.211 12 C -0.091 4.091 13 C -0.053 4.053 14 F -0.166 7.166 15 C 0.066 3.934 16 C -0.471 4.471 17 H 0.057 0.943 18 C 0.054 3.946 19 N -0.828 5.828 20 Si 0.964 3.036 21 H -0.234 1.234 22 H -0.274 1.274 23 H -0.264 1.264 24 C -0.252 4.252 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.425 0.575 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.301 0.699 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.404 13.719 -19.357 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.056 3.944 3 C -0.196 4.196 4 C -0.235 4.235 5 O -0.305 6.305 6 C -0.030 4.030 7 C 0.294 3.706 8 O -0.424 6.424 9 N -0.308 5.308 10 C 0.087 3.913 11 C -0.232 4.232 12 C -0.110 4.110 13 C -0.073 4.073 14 F -0.145 7.145 15 C 0.062 3.938 16 C -0.499 4.499 17 H 0.076 0.924 18 C -0.164 4.164 19 N -0.453 5.453 20 Si 0.787 3.213 21 H -0.159 1.159 22 H -0.201 1.201 23 H -0.189 1.189 24 C -0.273 4.273 25 H 0.073 0.927 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.264 0.736 37 H 0.143 0.857 38 H 0.154 0.846 39 H 0.112 0.888 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.006 14.109 -18.644 23.573 hybrid contribution -0.456 -0.561 0.427 0.840 sum -3.462 13.548 -18.217 22.965 Atomic orbital electron populations 1.22463 0.94320 1.03397 1.03509 1.21878 0.94329 0.93478 0.84690 1.21799 1.01593 0.93014 1.03158 1.22450 1.01896 1.01579 0.97622 1.88081 1.74921 1.22467 1.45027 1.22255 1.01154 0.85260 0.94352 1.21235 0.80433 0.80970 0.87987 1.90728 1.38706 1.61356 1.51587 1.43351 1.47826 1.12286 1.27351 1.17421 0.91686 0.93760 0.88396 1.20386 0.94881 1.06369 1.01598 1.20750 0.99876 0.95309 0.95075 1.18033 0.95553 1.03260 0.90463 1.91269 1.83981 1.84912 1.54384 1.17597 0.91444 0.92195 0.92520 1.19358 0.92437 1.12107 1.25983 0.92435 1.26850 0.98170 0.99732 0.91641 1.69702 1.11647 1.28951 1.34971 0.85535 0.77039 0.78685 0.80033 1.15870 1.20071 1.18893 1.20576 1.01172 1.07120 0.98442 0.92693 0.89321 0.91176 0.92655 0.88514 0.92835 0.91143 0.89372 0.92484 0.86741 0.87230 0.73624 0.85725 0.84609 0.88833 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 8.25 71.98 0.59 -1.59 16 2 C 0.09 1.51 1.14 -10.79 -0.01 1.50 16 3 C -0.14 -2.08 8.84 71.98 0.64 -1.44 16 4 C -0.18 -2.07 8.25 71.98 0.59 -1.48 16 5 O -0.39 -9.47 9.52 -129.94 -1.24 -10.71 16 6 C 0.05 0.99 5.62 71.24 0.40 1.39 16 7 C 0.51 15.70 7.65 87.66 0.67 16.37 16 8 O -0.55 -22.67 14.20 15.98 0.23 -22.44 16 9 N -0.66 -20.25 5.34 -303.60 -1.62 -21.87 16 10 C 0.18 7.43 6.26 38.09 0.24 7.67 16 11 C -0.21 -9.03 8.66 22.57 0.20 -8.84 16 12 C -0.09 -4.02 10.00 22.24 0.22 -3.80 16 13 C -0.05 -2.68 7.31 22.90 0.17 -2.51 16 14 F -0.17 -8.66 16.71 44.97 0.75 -7.91 16 15 C 0.07 3.48 5.22 -21.26 -0.11 3.37 16 16 C -0.47 -26.68 9.30 23.43 0.22 -26.46 16 17 H 0.06 3.59 7.89 -2.91 -0.02 3.56 16 18 C 0.05 2.79 5.41 85.25 0.46 3.25 16 19 N -0.83 -43.69 13.93 21.82 0.30 -43.38 16 20 Si 0.96 40.72 24.43 68.60 1.68 42.40 16 21 H -0.23 -8.47 6.64 99.48 0.66 -7.81 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.26 -12.14 6.80 99.48 0.68 -11.47 16 24 C -0.25 -11.43 7.08 22.83 0.16 -11.27 16 25 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.71 6.54 -2.39 -0.02 0.69 16 28 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.67 6.54 -2.39 -0.02 0.66 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.12 1.59 6.42 -2.39 -0.02 1.57 16 35 H 0.11 1.60 6.42 -2.39 -0.02 1.58 16 36 H 0.43 9.28 8.82 -92.71 -0.82 8.47 16 37 H 0.12 5.18 6.43 -2.91 -0.02 5.16 16 38 H 0.14 5.22 8.06 -2.91 -0.02 5.20 16 39 H 0.30 13.95 8.30 -92.71 -0.77 13.18 16 40 H 0.12 5.16 4.19 -2.91 -0.01 5.15 16 Total: -1.00 -71.09 330.24 4.72 -66.37 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.18 Total: 21.39 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: 4.44 Total: -23.84 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: -1.32 Total: -65.26 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.01 Total: -33.15 kcal Atomic # 9 Polarization: -8.66 SS G_CDS: 0.75 Total: -7.91 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.68 Total: 42.40 kcal Total: -71.09 4.72 -66.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180323435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.109 kcal (2) G-P(sol) polarization free energy of solvation -71.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds