Wall clock time and date at job start Tue Mar 31 2020 08:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46935 * 2 1 4 4 H 1.08997 * 109.47020 * 305.00080 * 3 2 1 5 5 C 1.50703 * 109.46982 * 185.00147 * 3 2 1 6 6 H 1.08004 * 120.00057 * 239.99552 * 5 3 2 7 7 C 1.37875 * 120.00036 * 60.00468 * 5 3 2 8 8 N 1.31508 * 119.99914 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99800 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47461 * 59.99278 * 9 7 5 11 11 H 1.48504 * 109.47089 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46923 * 299.99597 * 9 7 5 13 13 N 1.46496 * 109.47031 * 64.99997 * 3 2 1 14 14 C 1.34772 * 120.00214 * 275.00116 * 13 3 2 15 15 O 1.21281 * 119.99940 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00069 * 180.02562 * 14 13 3 17 17 C 1.50706 * 109.47001 * 179.97438 * 16 14 13 18 18 C 1.38259 * 119.95236 * 269.72490 * 17 16 14 19 19 C 1.38265 * 120.12272 * 179.76686 * 18 17 16 20 20 C 1.38338 * 120.02739 * 0.50839 * 19 18 17 21 21 F 1.35099 * 120.04584 * 179.72028 * 20 19 18 22 22 C 1.38907 * 119.90645 * 359.74773 * 20 19 18 23 23 O 1.35954 * 120.06495 * 180.02562 * 22 20 19 24 24 C 1.42893 * 117.00236 * 179.97438 * 23 22 20 25 25 C 1.38185 * 119.94743 * 89.99784 * 17 16 14 26 26 H 1.08996 * 109.47596 * 60.00334 * 1 2 3 27 27 H 1.09004 * 109.46522 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47299 * 299.99619 * 1 2 3 29 29 H 1.09002 * 109.47299 * 240.00381 * 2 1 3 30 30 H 1.09001 * 109.47292 * 119.99996 * 2 1 3 31 31 H 0.97006 * 119.99592 * 180.02562 * 8 7 5 32 32 H 0.97000 * 119.99972 * 95.00117 * 13 3 2 33 33 H 1.09000 * 109.46978 * 60.00374 * 16 14 13 34 34 H 1.09000 * 109.46976 * 299.99619 * 16 14 13 35 35 H 1.07996 * 119.94084 * 0.02562 * 18 17 16 36 36 H 1.07996 * 119.98557 * 180.23120 * 19 18 17 37 37 H 1.09005 * 109.47055 * 179.97438 * 24 23 22 38 38 H 1.08997 * 109.47346 * 299.99868 * 24 23 22 39 39 H 1.08999 * 109.47154 * 59.99649 * 24 23 22 40 40 H 1.07997 * 120.01968 * 359.96323 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8890 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3368 -2.1729 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1454 -0.2344 11 1 6.3978 0.2159 -2.6499 12 1 6.5003 2.2801 -1.3808 13 7 1.6523 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3394 2.6326 0.4341 16 6 0.0366 3.3385 2.6545 17 6 -1.3610 3.8868 2.5228 18 6 -1.5562 5.1760 2.0630 19 6 -2.8371 5.6809 1.9362 20 6 -3.9262 4.9001 2.2795 21 9 -5.1777 5.3951 2.1612 22 6 -3.7312 3.6065 2.7467 23 8 -4.7992 2.8361 3.0846 24 6 -4.5234 1.5160 3.5569 25 6 -2.4451 3.1022 2.8672 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0616 -2.9496 32 1 2.2718 2.1231 1.9977 33 1 0.7279 4.1541 2.8666 34 1 0.0680 2.6144 3.4686 35 1 -0.7069 5.7883 1.7983 36 1 -2.9873 6.6869 1.5732 37 1 -5.4604 1.0107 3.7909 38 1 -3.9919 0.9579 2.7860 39 1 -3.9074 1.5725 4.4543 40 1 -2.2909 2.0968 3.2299 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180428686.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:08 Heat of formation + Delta-G solvation = -123.953367 kcal Electronic energy + Delta-G solvation = -23692.261226 eV Core-core repulsion = 19999.813887 eV Total energy + Delta-G solvation = -3692.447339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.82850 -41.27233 -40.41731 -38.53532 -36.83427 -34.26272 -33.61320 -32.55219 -31.29849 -29.46083 -28.59178 -27.49791 -24.96578 -23.57341 -23.14816 -21.84194 -20.99940 -19.23730 -18.74121 -18.11808 -17.84850 -17.40572 -17.14056 -17.04968 -16.27441 -16.08483 -16.05473 -15.55093 -15.24814 -15.10856 -14.72024 -14.54308 -14.31505 -13.76501 -13.48619 -13.25750 -13.10956 -13.05918 -12.88461 -12.72989 -12.62155 -12.36892 -12.16993 -12.16203 -12.02667 -11.97178 -11.55335 -11.02515 -10.63352 -10.46786 -9.83096 -9.54655 -9.17291 -8.13316 -6.30533 0.07529 0.27927 1.46858 1.48037 1.55749 1.96750 2.18606 2.35325 2.47468 2.93017 3.16481 3.23109 3.58837 3.75170 4.05603 4.22101 4.25409 4.31416 4.34740 4.47983 4.51621 4.59631 4.61550 4.66230 4.70449 4.78978 4.97095 4.99765 5.09876 5.18678 5.29345 5.46802 5.50019 5.59769 5.65868 5.69897 5.84048 5.98683 6.21309 6.26799 6.79056 7.09296 7.37738 7.70331 8.91483 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.027251 B = 0.003406 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.231142 B = 8219.242243 C = 8678.626024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.290 1.290 12 H -0.271 1.271 13 N -0.706 5.706 14 C 0.498 3.502 15 O -0.584 6.584 16 C -0.095 4.095 17 C -0.034 4.034 18 C -0.120 4.120 19 C -0.112 4.112 20 C 0.034 3.966 21 F -0.147 7.147 22 C 0.083 3.917 23 O -0.333 6.333 24 C 0.018 3.982 25 C -0.171 4.171 26 H 0.020 0.980 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.405 0.595 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.152 0.848 36 H 0.163 0.837 37 H 0.123 0.877 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.825 5.454 15.023 18.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.013 0.987 5 C -0.585 4.585 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.215 1.215 12 H -0.196 1.196 13 N -0.356 5.356 14 C 0.285 3.715 15 O -0.465 6.465 16 C -0.135 4.135 17 C -0.035 4.035 18 C -0.138 4.138 19 C -0.131 4.131 20 C 0.015 3.985 21 F -0.126 7.126 22 C 0.037 3.963 23 O -0.247 6.247 24 C -0.076 4.076 25 C -0.190 4.190 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.240 0.760 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.169 0.831 36 H 0.180 0.820 37 H 0.141 0.859 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.599 5.377 14.177 17.945 hybrid contribution 0.895 -0.311 -0.439 1.044 sum -8.704 5.065 13.738 17.034 Atomic orbital electron populations 1.21660 0.97019 0.98904 1.00271 1.21779 0.93667 0.99370 1.01181 1.18297 0.93397 0.89068 0.81719 0.98664 1.21594 0.91633 1.38725 1.06588 0.90843 1.25755 1.03103 0.94507 0.95135 1.70050 1.37063 1.38453 1.09895 0.85470 0.79406 0.78436 0.77451 1.18881 1.21541 1.19629 1.46237 1.15722 1.56201 1.17425 1.21063 0.81638 0.78613 0.90136 1.90704 1.52387 1.60846 1.42562 1.20773 0.94013 1.03016 0.95652 1.19418 0.94402 0.93673 0.96029 1.21093 0.97080 0.95780 0.99891 1.21207 0.90692 1.01117 1.00082 1.17314 0.80388 0.91846 1.08977 1.91436 1.39040 1.87618 1.94476 1.19109 0.87896 0.90604 0.98694 1.86076 1.30655 1.27798 1.80157 1.23394 1.05129 0.79621 0.99483 1.21155 0.90123 1.01651 1.06076 0.96040 0.93903 0.93270 0.91424 0.93917 0.92754 0.75983 0.84865 0.85135 0.83069 0.81991 0.85875 0.92566 0.90729 0.83164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 8.51 71.98 0.61 -4.66 16 2 C -0.12 -5.76 5.45 30.59 0.17 -5.59 16 3 C 0.28 13.66 2.24 44.25 0.10 13.76 16 4 H 0.00 -0.27 7.58 -2.39 -0.02 -0.29 16 5 C -0.55 -27.85 8.73 25.60 0.22 -27.63 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.79 5.29 84.66 0.45 1.24 16 8 N -0.92 -51.75 11.29 21.45 0.24 -51.51 16 9 Si 0.97 41.04 29.54 68.60 2.03 43.06 16 10 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 13 N -0.71 -26.21 5.02 -446.11 -2.24 -28.45 16 14 C 0.50 17.24 6.39 87.66 0.56 17.80 16 15 O -0.58 -25.86 13.17 -3.03 -0.04 -25.90 16 16 C -0.10 -2.08 5.83 29.10 0.17 -1.91 16 17 C -0.03 -0.85 4.37 -19.87 -0.09 -0.94 16 18 C -0.12 -2.84 9.69 22.28 0.22 -2.63 16 19 C -0.11 -2.70 10.02 22.30 0.22 -2.48 16 20 C 0.03 0.98 7.31 22.45 0.16 1.14 16 21 F -0.15 -4.40 17.11 44.97 0.77 -3.63 16 22 C 0.08 2.31 6.69 22.53 0.15 2.46 16 23 O -0.33 -8.78 10.36 -93.03 -0.96 -9.74 16 24 C 0.02 0.30 9.81 113.37 1.11 1.42 16 25 C -0.17 -4.29 8.69 22.36 0.19 -4.10 16 26 H 0.02 1.02 7.85 -2.39 -0.02 1.00 16 27 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.05 2.00 5.65 -2.39 -0.01 1.99 16 29 H 0.07 3.67 5.95 -2.39 -0.01 3.65 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 32 H 0.41 12.20 8.54 -92.71 -0.79 11.41 16 33 H 0.13 2.12 8.08 -2.39 -0.02 2.11 16 34 H 0.13 2.04 8.08 -2.39 -0.02 2.03 16 35 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 36 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 39 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 40 H 0.15 3.14 6.30 -2.91 -0.02 3.12 16 Total: -1.00 -69.98 336.80 4.32 -65.66 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.27 Total: 22.63 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 4.25 Total: -12.11 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -2.00 Total: -79.96 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.00 Total: -35.65 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.77 Total: -3.63 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Total: -69.98 4.32 -65.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180428686.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.297 kcal (2) G-P(sol) polarization free energy of solvation -69.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds