Wall clock time and date at job start Tue Mar 31 2020 08:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46723 * 2 1 4 4 C 1.52997 * 109.47223 * 119.99889 * 2 1 3 5 5 O 1.42897 * 109.47329 * 175.00210 * 4 2 1 6 6 C 1.42892 * 114.00257 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47341 * 180.02562 * 6 5 4 8 8 O 1.21292 * 120.00132 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00387 * 179.97438 * 7 6 5 10 10 C 1.40003 * 120.00490 * 175.68372 * 9 7 6 11 11 C 1.39370 * 119.91468 * 215.20965 * 10 9 7 12 12 C 1.38365 * 120.46952 * 180.02562 * 11 10 9 13 13 C 1.38002 * 120.29012 * 0.02562 * 12 11 10 14 14 F 1.35103 * 120.09621 * 179.97438 * 13 12 11 15 15 C 1.41011 * 119.81251 * 359.97438 * 13 12 11 16 16 C 1.41289 * 120.23067 * 179.97438 * 15 13 12 17 17 H 1.08007 * 119.99819 * 324.96203 * 16 15 13 18 18 C 1.39921 * 120.00441 * 145.24250 * 16 15 13 19 19 N 1.30853 * 119.99805 * 4.44088 * 18 16 15 20 20 Si 1.86797 * 120.00393 * 184.44385 * 18 16 15 21 21 H 1.48504 * 109.46946 * 89.99580 * 20 18 16 22 22 H 1.48494 * 109.47139 * 209.99743 * 20 18 16 23 23 H 1.48497 * 109.47043 * 330.00167 * 20 18 16 24 24 C 1.38148 * 119.91063 * 35.44629 * 10 9 7 25 25 H 1.08995 * 109.47449 * 299.99872 * 1 2 3 26 26 H 1.09001 * 109.47247 * 59.99746 * 1 2 3 27 27 H 1.09000 * 109.47151 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47100 * 240.00535 * 2 1 3 29 29 H 1.09002 * 109.46984 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47466 * 300.00120 * 3 2 1 31 31 H 1.09004 * 109.47228 * 60.00451 * 3 2 1 32 32 H 1.09001 * 109.47208 * 54.99877 * 4 2 1 33 33 H 1.09006 * 109.47219 * 295.00556 * 4 2 1 34 34 H 1.08999 * 109.47101 * 59.99862 * 6 5 4 35 35 H 1.09003 * 109.47406 * 299.99997 * 6 5 4 36 36 H 0.97007 * 120.00011 * 355.68412 * 9 7 6 37 37 H 1.08005 * 119.76241 * 0.02562 * 11 10 9 38 38 H 1.08004 * 119.85022 * 179.97438 * 12 11 10 39 39 H 0.96993 * 120.00123 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.14309 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 3.4642 -0.8237 1.1920 6 6 4.0450 -1.4855 2.3175 7 6 5.5421 -1.5362 2.1529 8 8 6.0607 -1.0535 1.1684 9 7 6.3048 -2.1178 3.0997 10 6 7.6854 -2.2457 2.9055 11 6 8.3541 -3.3693 3.3881 12 6 9.7183 -3.5071 3.2031 13 6 10.4327 -2.5315 2.5380 14 9 11.7648 -2.6699 2.3600 15 6 9.7683 -1.3897 2.0447 16 6 10.4911 -0.3852 1.3630 17 1 11.5015 -0.1491 1.6629 18 6 9.8959 0.3080 0.3033 19 7 8.6424 0.0878 -0.0006 20 14 10.8908 1.5477 -0.6779 21 1 11.5465 0.8628 -1.8208 22 1 9.9900 2.6118 -1.1891 23 1 11.9269 2.1539 0.1963 24 6 8.3821 -1.2554 2.2404 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8901 32 1 1.6054 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.6520 -2.4999 2.3851 35 1 3.7982 -0.9388 3.2277 36 1 5.8972 -2.4479 3.9157 37 1 7.8033 -4.1378 3.9102 38 1 10.2265 -4.3818 3.5816 39 1 8.2298 0.5680 -0.7354 40 1 7.8642 -0.3829 1.8703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180753117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:15 Heat of formation + Delta-G solvation = -114.885345 kcal Electronic energy + Delta-G solvation = -23418.471781 eV Core-core repulsion = 19726.417661 eV Total energy + Delta-G solvation = -3692.054120 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.15500 -39.61054 -38.13983 -36.81674 -34.97059 -34.17985 -33.08700 -29.68974 -29.21707 -27.27519 -27.09146 -25.49216 -25.20994 -21.77392 -20.97401 -20.40994 -19.52728 -17.77737 -16.94033 -16.42470 -16.28964 -15.95673 -15.54687 -15.08785 -14.85266 -14.51772 -14.15589 -13.94109 -13.68950 -13.44891 -12.93325 -12.86360 -12.50580 -12.35826 -12.10604 -12.01051 -11.75838 -11.71225 -11.42721 -11.14087 -11.05798 -11.00071 -10.90640 -10.69145 -10.56684 -10.24256 -9.66621 -9.64568 -9.18818 -9.03191 -8.77452 -7.40580 -6.87534 -6.45268 -4.35689 2.53030 2.82716 3.13477 3.14483 3.17486 3.20434 3.38129 4.04175 4.17519 4.69664 4.72234 4.78241 5.01776 5.09455 5.20212 5.24467 5.30143 5.36012 5.46572 5.50806 5.60921 5.74427 5.81819 5.90910 5.95831 6.13157 6.17810 6.35298 6.40114 6.78771 6.92674 7.01731 7.10826 7.29817 7.47356 7.59520 7.75512 8.07083 8.16275 8.34967 8.56714 8.89602 8.90379 8.92826 10.35460 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.004288 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.287398 B = 6528.216142 C = 8271.031965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.146 4.146 4 C 0.065 3.935 5 O -0.357 6.357 6 C 0.049 3.951 7 C 0.488 3.512 8 O -0.456 6.456 9 N -0.672 5.672 10 C 0.132 3.868 11 C -0.235 4.235 12 C -0.115 4.115 13 C -0.033 4.033 14 F -0.164 7.164 15 C 0.091 3.909 16 C -0.458 4.458 17 H 0.079 0.921 18 C 0.067 3.933 19 N -0.768 5.768 20 Si 0.914 3.086 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.131 4.131 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.396 0.604 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.282 0.718 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.352 -0.686 3.856 15.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.012 4.012 5 O -0.274 6.274 6 C -0.032 4.032 7 C 0.271 3.729 8 O -0.325 6.325 9 N -0.319 5.319 10 C 0.040 3.960 11 C -0.257 4.257 12 C -0.135 4.135 13 C -0.053 4.053 14 F -0.143 7.143 15 C 0.087 3.913 16 C -0.487 4.487 17 H 0.098 0.902 18 C -0.153 4.153 19 N -0.391 5.391 20 Si 0.739 3.261 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.153 4.153 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.229 0.771 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.094 0.906 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.073 -0.149 2.736 15.320 hybrid contribution 0.148 -0.016 0.199 0.249 sum -14.925 -0.165 2.935 15.211 Atomic orbital electron populations 1.21785 0.94492 1.01788 1.02130 1.21080 0.95092 0.97221 0.97987 1.21800 1.02727 0.94752 1.01067 1.22628 0.81313 0.99036 0.98252 1.88049 1.19363 1.78432 1.41602 1.22166 0.92572 0.97942 0.90486 1.20260 0.88017 0.80327 0.84259 1.90979 1.73002 1.40532 1.27991 1.43218 1.06890 1.61225 1.20536 1.17647 0.80703 0.95459 1.02194 1.19885 0.93849 0.98681 1.13280 1.20242 0.94002 0.97945 1.01319 1.18036 0.77403 0.98074 1.11833 1.91267 1.32132 1.96133 1.94748 1.17566 0.92228 0.90786 0.90758 1.19405 1.00541 1.15794 1.12965 0.90245 1.25955 0.95099 0.96573 0.97645 1.69844 1.10533 1.34366 1.24398 0.86214 0.80034 0.79820 0.80054 1.19492 1.20237 1.18686 1.21699 0.93583 0.99382 1.00606 0.92607 0.92053 0.92633 0.90161 0.91182 0.92918 0.93109 0.93457 0.93383 0.90882 0.90910 0.77091 0.88340 0.87858 0.90628 0.82450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.19 37.16 0.34 -0.78 16 2 C -0.10 -1.00 3.16 -90.62 -0.29 -1.29 16 3 C -0.15 -1.64 9.09 37.16 0.34 -1.30 16 4 C 0.06 0.71 5.32 37.16 0.20 0.91 16 5 O -0.36 -5.51 9.41 -55.14 -0.52 -6.03 16 6 C 0.05 0.66 6.42 36.00 0.23 0.89 16 7 C 0.49 9.24 7.74 -10.99 -0.09 9.15 16 8 O -0.46 -11.23 13.89 -14.36 -0.20 -11.43 16 9 N -0.67 -11.99 5.34 -9.90 -0.05 -12.04 16 10 C 0.13 2.99 6.29 -83.74 -0.53 2.47 16 11 C -0.24 -5.00 9.97 -39.11 -0.39 -5.39 16 12 C -0.12 -2.62 10.00 -39.62 -0.40 -3.02 16 13 C -0.03 -0.86 7.31 -38.62 -0.28 -1.14 16 14 F -0.16 -4.24 16.82 2.25 0.04 -4.20 16 15 C 0.09 2.52 5.55 -106.78 -0.59 1.93 16 16 C -0.46 -12.82 8.69 -37.79 -0.33 -13.15 16 17 H 0.08 2.18 7.84 -52.48 -0.41 1.77 16 18 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 19 N -0.77 -21.23 10.55 55.55 0.59 -20.64 16 20 Si 0.91 20.00 29.56 -169.99 -5.03 14.97 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 24 C -0.13 -3.49 7.30 -38.71 -0.28 -3.77 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.98 7.82 -51.93 -0.41 0.58 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.40 5.16 8.82 -40.82 -0.36 4.80 16 37 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 38 H 0.10 2.05 8.06 -52.48 -0.42 1.62 16 39 H 0.28 7.35 8.30 -40.82 -0.34 7.01 16 40 H 0.16 4.49 4.34 -52.48 -0.23 4.26 16 LS Contribution 342.99 15.07 5.17 5.17 Total: -1.00 -32.68 342.99 -7.77 -40.46 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.61 Total: 6.58 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -2.16 Total: -12.83 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.53 Total: -32.69 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.72 Total: -17.46 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.04 Total: -4.20 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.68 -7.77 -40.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180753117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.429 kcal (2) G-P(sol) polarization free energy of solvation -32.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds