Wall clock time and date at job start Tue Mar 31 2020 08:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46723 * 2 1 4 4 C 1.52997 * 109.47223 * 119.99889 * 2 1 3 5 5 O 1.42897 * 109.47329 * 175.00210 * 4 2 1 6 6 C 1.42892 * 114.00257 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47341 * 180.02562 * 6 5 4 8 8 O 1.21292 * 120.00132 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00387 * 179.97438 * 7 6 5 10 10 C 1.40003 * 120.00490 * 175.68372 * 9 7 6 11 11 C 1.39370 * 119.91468 * 215.20965 * 10 9 7 12 12 C 1.38365 * 120.46952 * 180.02562 * 11 10 9 13 13 C 1.38002 * 120.29012 * 0.02562 * 12 11 10 14 14 F 1.35103 * 120.09621 * 179.97438 * 13 12 11 15 15 C 1.41011 * 119.81251 * 359.97438 * 13 12 11 16 16 C 1.41289 * 120.23067 * 179.97438 * 15 13 12 17 17 H 1.08007 * 119.99819 * 324.96203 * 16 15 13 18 18 C 1.39921 * 120.00441 * 145.24250 * 16 15 13 19 19 N 1.30853 * 119.99805 * 4.44088 * 18 16 15 20 20 Si 1.86797 * 120.00393 * 184.44385 * 18 16 15 21 21 H 1.48504 * 109.46946 * 89.99580 * 20 18 16 22 22 H 1.48494 * 109.47139 * 209.99743 * 20 18 16 23 23 H 1.48497 * 109.47043 * 330.00167 * 20 18 16 24 24 C 1.38148 * 119.91063 * 35.44629 * 10 9 7 25 25 H 1.08995 * 109.47449 * 299.99872 * 1 2 3 26 26 H 1.09001 * 109.47247 * 59.99746 * 1 2 3 27 27 H 1.09000 * 109.47151 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47100 * 240.00535 * 2 1 3 29 29 H 1.09002 * 109.46984 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47466 * 300.00120 * 3 2 1 31 31 H 1.09004 * 109.47228 * 60.00451 * 3 2 1 32 32 H 1.09001 * 109.47208 * 54.99877 * 4 2 1 33 33 H 1.09006 * 109.47219 * 295.00556 * 4 2 1 34 34 H 1.08999 * 109.47101 * 59.99862 * 6 5 4 35 35 H 1.09003 * 109.47406 * 299.99997 * 6 5 4 36 36 H 0.97007 * 120.00011 * 355.68412 * 9 7 6 37 37 H 1.08005 * 119.76241 * 0.02562 * 11 10 9 38 38 H 1.08004 * 119.85022 * 179.97438 * 12 11 10 39 39 H 0.96993 * 120.00123 * 180.02562 * 19 18 16 40 40 H 1.08003 * 120.14309 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 8 3.4642 -0.8237 1.1920 6 6 4.0450 -1.4855 2.3175 7 6 5.5421 -1.5362 2.1529 8 8 6.0607 -1.0535 1.1684 9 7 6.3048 -2.1178 3.0997 10 6 7.6854 -2.2457 2.9055 11 6 8.3541 -3.3693 3.3881 12 6 9.7183 -3.5071 3.2031 13 6 10.4327 -2.5315 2.5380 14 9 11.7648 -2.6699 2.3600 15 6 9.7683 -1.3897 2.0447 16 6 10.4911 -0.3852 1.3630 17 1 11.5015 -0.1491 1.6629 18 6 9.8959 0.3080 0.3033 19 7 8.6424 0.0878 -0.0006 20 14 10.8908 1.5477 -0.6779 21 1 11.5465 0.8628 -1.8208 22 1 9.9900 2.6118 -1.1891 23 1 11.9269 2.1539 0.1963 24 6 8.3821 -1.2554 2.2404 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8901 32 1 1.6054 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.6520 -2.4999 2.3851 35 1 3.7982 -0.9388 3.2277 36 1 5.8972 -2.4479 3.9157 37 1 7.8033 -4.1378 3.9102 38 1 10.2265 -4.3818 3.5816 39 1 8.2298 0.5680 -0.7354 40 1 7.8642 -0.3829 1.8703 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180753117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:14 Heat of formation + Delta-G solvation = -135.394507 kcal Electronic energy + Delta-G solvation = -23419.361125 eV Core-core repulsion = 19726.417661 eV Total energy + Delta-G solvation = -3692.943464 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.16519 -41.13695 -39.33572 -38.45193 -36.05251 -35.82075 -34.89209 -31.62906 -30.70649 -28.51139 -28.01115 -27.27392 -26.34951 -23.57879 -22.72532 -21.41889 -20.98641 -19.58803 -18.16644 -17.99776 -17.85604 -17.42419 -17.08297 -16.62279 -16.16115 -16.10698 -15.93150 -15.42483 -14.96317 -14.80173 -14.50685 -14.32576 -13.88830 -13.67589 -13.54151 -13.31987 -13.13900 -13.02837 -12.91365 -12.83536 -12.69424 -12.41511 -12.09783 -11.97844 -11.78969 -11.52567 -11.49836 -11.12910 -10.76055 -10.59898 -10.42098 -9.35498 -8.73254 -8.37861 -6.43641 0.68144 0.94902 1.33256 1.42598 1.48290 1.81088 1.95425 2.20492 2.76075 3.08423 3.48912 3.83126 3.93955 4.03620 4.06198 4.23101 4.24964 4.34108 4.37631 4.52330 4.66408 4.66919 4.75255 4.80584 4.99131 5.02489 5.06148 5.09066 5.17466 5.24163 5.28393 5.39870 5.43974 5.64958 5.80245 5.83243 6.12445 6.21652 6.27770 6.57518 6.76646 6.88348 6.92427 7.49582 8.38663 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.014864 B = 0.004288 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.287398 B = 6528.216142 C = 8271.031965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 C -0.144 4.144 4 C 0.060 3.940 5 O -0.399 6.399 6 C 0.059 3.941 7 C 0.479 3.521 8 O -0.522 6.522 9 N -0.656 5.656 10 C 0.135 3.865 11 C -0.212 4.212 12 C -0.112 4.112 13 C -0.063 4.063 14 F -0.170 7.170 15 C 0.055 3.945 16 C -0.500 4.500 17 H 0.068 0.932 18 C 0.024 3.976 19 N -0.801 5.801 20 Si 0.984 3.016 21 H -0.265 1.265 22 H -0.267 1.267 23 H -0.257 1.257 24 C -0.157 4.157 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.031 0.969 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.423 0.577 37 H 0.151 0.849 38 H 0.140 0.860 39 H 0.281 0.719 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.836 -2.169 5.536 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.118 4.118 3 C -0.202 4.202 4 C -0.016 4.016 5 O -0.319 6.319 6 C -0.020 4.020 7 C 0.265 3.735 8 O -0.395 6.395 9 N -0.305 5.305 10 C 0.041 3.959 11 C -0.232 4.232 12 C -0.132 4.132 13 C -0.084 4.084 14 F -0.150 7.150 15 C 0.052 3.948 16 C -0.531 4.531 17 H 0.087 0.913 18 C -0.191 4.191 19 N -0.426 5.426 20 Si 0.804 3.196 21 H -0.190 1.190 22 H -0.192 1.192 23 H -0.181 1.181 24 C -0.179 4.179 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.262 0.738 37 H 0.169 0.831 38 H 0.157 0.843 39 H 0.091 0.909 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.598 -1.665 4.481 18.236 hybrid contribution 0.809 0.306 -0.194 0.886 sum -16.789 -1.359 4.287 17.381 Atomic orbital electron populations 1.21728 0.91913 1.02813 1.02958 1.21139 0.97132 0.96143 0.97349 1.21772 1.00183 0.96048 1.02153 1.22859 0.79124 1.00604 0.98963 1.88019 1.21945 1.79079 1.42832 1.22204 0.87918 1.00643 0.91228 1.21428 0.90532 0.78420 0.83095 1.90975 1.74677 1.43125 1.30698 1.43108 1.04936 1.60751 1.21698 1.17797 0.82965 0.94713 1.00385 1.20433 0.93456 0.98454 1.10903 1.20685 0.94696 0.97918 0.99861 1.18395 0.77531 0.99032 1.13416 1.91233 1.32576 1.96176 1.94983 1.17932 0.93329 0.91800 0.91746 1.19559 1.00536 1.17988 1.14970 0.91334 1.26789 0.96046 0.98145 0.98109 1.69995 1.11954 1.35692 1.24944 0.85182 0.78568 0.77417 0.78392 1.18990 1.19151 1.18052 1.21574 0.93476 1.00365 1.02487 0.91390 0.91648 0.91502 0.92161 0.95013 0.92090 0.91804 0.91285 0.91477 0.86987 0.87261 0.73801 0.83145 0.84258 0.90865 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.19 71.98 0.66 -1.12 16 2 C -0.10 -1.98 3.16 -10.79 -0.03 -2.01 16 3 C -0.14 -3.24 9.09 71.98 0.65 -2.58 16 4 C 0.06 1.18 5.32 71.98 0.38 1.57 16 5 O -0.40 -11.92 9.41 -129.94 -1.22 -13.15 16 6 C 0.06 1.42 6.42 71.23 0.46 1.88 16 7 C 0.48 17.71 7.74 87.66 0.68 18.39 16 8 O -0.52 -26.65 13.89 15.97 0.22 -26.43 16 9 N -0.66 -21.89 5.34 -303.61 -1.62 -23.51 16 10 C 0.14 5.97 6.29 38.09 0.24 6.21 16 11 C -0.21 -8.26 9.97 22.57 0.22 -8.03 16 12 C -0.11 -4.86 10.00 22.24 0.22 -4.63 16 13 C -0.06 -3.36 7.31 22.89 0.17 -3.19 16 14 F -0.17 -9.05 16.82 44.97 0.76 -8.29 16 15 C 0.06 3.23 5.55 -21.26 -0.12 3.11 16 16 C -0.50 -29.78 8.69 23.43 0.20 -29.57 16 17 H 0.07 4.03 7.84 -2.91 -0.02 4.00 16 18 C 0.02 1.37 5.42 85.25 0.46 1.83 16 19 N -0.80 -47.10 10.55 21.82 0.23 -46.87 16 20 Si 0.98 43.01 29.56 68.60 2.03 45.04 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 24 C -0.16 -8.66 7.30 22.83 0.17 -8.50 16 25 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.03 0.94 7.82 -2.39 -0.02 0.92 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.42 9.23 8.82 -92.70 -0.82 8.41 16 37 H 0.15 4.36 8.06 -2.91 -0.02 4.33 16 38 H 0.14 4.98 8.06 -2.91 -0.02 4.95 16 39 H 0.28 15.59 8.30 -92.71 -0.77 14.82 16 40 H 0.13 8.00 4.34 -2.91 -0.01 7.99 16 Total: -1.00 -78.80 342.99 5.00 -73.80 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.24 Total: 26.06 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 4.37 Total: -26.65 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -1.39 Total: -70.38 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -1.00 Total: -39.58 kcal Atomic # 9 Polarization: -9.05 SS G_CDS: 0.76 Total: -8.29 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -78.80 5.00 -73.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180753117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.597 kcal (2) G-P(sol) polarization free energy of solvation -78.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds