Wall clock time and date at job start Tue Mar 31 2020 08:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00142 * 2 1 4 4 C 1.52998 * 109.47256 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47235 * 60.00118 * 4 3 2 6 6 C 1.53002 * 109.47302 * 300.00020 * 4 3 2 7 7 C 1.50702 * 109.47177 * 179.97438 * 4 3 2 8 8 O 1.21291 * 119.99996 * 0.02562 * 7 4 3 9 9 N 1.34777 * 120.00199 * 179.97438 * 7 4 3 10 10 C 1.40001 * 119.99944 * 175.45087 * 9 7 4 11 11 C 1.39373 * 119.91318 * 325.90023 * 10 9 7 12 12 C 1.38370 * 120.46947 * 180.02562 * 11 10 9 13 13 C 1.38008 * 120.28590 * 359.97438 * 12 11 10 14 14 F 1.35104 * 120.08633 * 179.97438 * 13 12 11 15 15 C 1.41000 * 119.81610 * 359.97438 * 13 12 11 16 16 C 1.41292 * 120.23084 * 179.97438 * 15 13 12 17 17 H 1.08009 * 119.99676 * 334.89861 * 16 15 13 18 18 C 1.39921 * 120.00258 * 155.17668 * 16 15 13 19 19 N 1.30857 * 120.00158 * 160.46775 * 18 16 15 20 20 Si 1.86799 * 120.00112 * 340.47087 * 18 16 15 21 21 H 1.48495 * 109.47291 * 95.24574 * 20 18 16 22 22 H 1.48495 * 109.47026 * 215.25169 * 20 18 16 23 23 H 1.48510 * 109.46742 * 335.24602 * 20 18 16 24 24 C 1.38146 * 119.91068 * 146.13223 * 10 9 7 25 25 H 1.08998 * 109.46960 * 299.99613 * 1 2 3 26 26 H 1.08998 * 109.47265 * 59.99774 * 1 2 3 27 27 H 1.09004 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46719 * 59.99906 * 3 2 1 29 29 H 1.09003 * 109.46961 * 300.00198 * 3 2 1 30 30 H 1.08997 * 109.47236 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.46844 * 300.00338 * 5 4 3 32 32 H 1.08996 * 109.46750 * 59.99942 * 5 4 3 33 33 H 1.09007 * 109.47111 * 300.00399 * 6 4 3 34 34 H 1.09000 * 109.46815 * 59.99639 * 6 4 3 35 35 H 1.08997 * 109.47128 * 180.02562 * 6 4 3 36 36 H 0.97001 * 119.99772 * 355.45547 * 9 7 4 37 37 H 1.07999 * 119.76187 * 0.02562 * 11 10 9 38 38 H 1.08000 * 119.85189 * 179.97438 * 12 11 10 39 39 H 0.96992 * 120.00213 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.14458 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9864 0.4256 -1.2502 6 6 3.9875 0.4251 1.2483 7 6 4.1484 2.5613 -0.0013 8 8 3.4355 3.5426 -0.0008 9 7 5.4888 2.7022 -0.0014 10 6 6.0586 3.9774 -0.0981 11 6 5.4334 4.9620 -0.8611 12 6 5.9867 6.2260 -0.9651 13 6 7.1653 6.5256 -0.3128 14 9 7.7023 7.7609 -0.4175 15 6 7.8075 5.5389 0.4633 16 6 9.0149 5.8360 1.1344 17 1 9.6574 6.6227 0.7671 18 6 9.3810 5.1072 2.2713 19 7 10.6277 5.0975 2.6689 20 14 8.0902 4.1479 3.2216 21 1 8.0830 2.7365 2.7602 22 1 8.4077 4.1932 4.6715 23 1 6.7536 4.7518 2.9885 24 6 7.2416 4.2549 0.5590 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 5.0730 0.3399 -1.2509 31 1 3.5430 -0.5702 -1.2502 32 1 3.6644 0.9667 -2.1399 33 1 3.6661 0.9658 2.1385 34 1 3.5441 -0.5706 1.2483 35 1 5.0741 0.3394 1.2480 36 1 6.0587 1.9201 0.0655 37 1 4.5104 4.7367 -1.3748 38 1 5.4939 6.9813 -1.5594 39 1 10.8816 4.5920 3.4567 40 1 7.7279 3.4904 1.1467 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181943933.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:18 Heat of formation + Delta-G solvation = -117.257145 kcal Electronic energy + Delta-G solvation = -23980.541017 eV Core-core repulsion = 20288.384049 eV Total energy + Delta-G solvation = -3692.156969 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.36573 -40.46566 -38.32587 -37.31137 -34.95162 -34.39515 -33.38101 -30.62959 -28.44864 -27.47400 -27.46833 -25.73530 -25.30027 -23.19632 -22.08631 -20.47626 -19.30836 -17.68680 -17.34727 -16.58997 -16.31418 -16.04901 -15.76096 -15.30463 -15.09864 -14.86556 -14.34679 -14.15215 -14.03959 -13.50329 -13.44570 -13.25513 -12.81771 -12.46634 -12.31259 -12.16734 -12.00164 -11.97246 -11.80791 -11.67097 -11.48469 -11.19087 -10.93367 -10.88193 -10.68242 -10.27558 -9.87451 -9.83342 -9.55645 -9.26227 -9.18332 -7.88637 -7.15386 -7.11939 -4.62178 2.12904 2.45195 2.86674 2.98206 3.08925 3.16165 3.23924 3.83976 3.84718 4.32007 4.48832 4.67485 4.73495 5.02303 5.12843 5.14191 5.19976 5.42193 5.44666 5.45876 5.52714 5.66223 5.69594 5.69875 5.77840 5.84215 6.07238 6.08610 6.24700 6.36167 6.43915 6.57151 6.92132 6.93106 7.19648 7.32607 7.44047 7.46880 7.78484 7.96245 8.18990 8.36116 8.51635 8.59754 9.89068 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.020032 B = 0.004512 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.393498 B = 6203.885745 C = 7141.961952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.086 3.914 4 C -0.079 4.079 5 C -0.136 4.136 6 C -0.139 4.139 7 C 0.521 3.479 8 O -0.521 6.521 9 N -0.665 5.665 10 C 0.172 3.828 11 C -0.215 4.215 12 C -0.098 4.098 13 C -0.020 4.020 14 F -0.157 7.157 15 C 0.081 3.919 16 C -0.431 4.431 17 H 0.098 0.902 18 C 0.085 3.915 19 N -0.794 5.794 20 Si 0.913 3.087 21 H -0.270 1.270 22 H -0.289 1.289 23 H -0.241 1.241 24 C -0.252 4.252 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.404 0.596 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.289 0.711 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.089 -12.194 -3.010 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C 0.009 3.991 4 C -0.083 4.083 5 C -0.194 4.194 6 C -0.197 4.197 7 C 0.307 3.693 8 O -0.396 6.396 9 N -0.309 5.309 10 C 0.080 3.920 11 C -0.236 4.236 12 C -0.117 4.117 13 C -0.040 4.040 14 F -0.136 7.136 15 C 0.077 3.923 16 C -0.458 4.458 17 H 0.116 0.884 18 C -0.136 4.136 19 N -0.416 5.416 20 Si 0.740 3.260 21 H -0.197 1.197 22 H -0.216 1.216 23 H -0.164 1.164 24 C -0.273 4.273 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.239 0.761 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.099 0.901 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.238 -11.670 -2.856 17.877 hybrid contribution -0.143 -0.370 0.566 0.691 sum -13.382 -12.039 -2.290 18.145 Atomic orbital electron populations 1.22714 0.80943 1.02517 1.00149 1.87784 1.19612 1.27874 1.95524 1.22218 0.91099 0.84050 1.01720 1.20711 0.95122 0.93311 0.99137 1.21799 1.01457 1.00868 0.95252 1.21830 1.01410 1.01019 0.95428 1.20331 0.82337 0.90580 0.76027 1.90718 1.60737 1.40235 1.47959 1.43475 1.06582 1.08520 1.72288 1.17415 0.93696 0.84002 0.96892 1.20099 1.03002 0.93248 1.07277 1.20470 0.94764 0.96762 0.99733 1.17710 0.96155 0.80629 1.09513 1.91307 1.86364 1.40452 1.95485 1.17403 0.92579 0.89837 0.92506 1.19445 1.02011 1.16113 1.08278 0.88438 1.26198 0.95898 0.94139 0.97354 1.69696 1.17604 1.32439 1.21888 0.86297 0.83035 0.79596 0.77077 1.19678 1.21645 1.16443 1.20486 1.00196 0.97173 1.09453 0.94063 0.94069 0.89681 0.92336 0.92321 0.91954 0.90498 0.92106 0.92081 0.90388 0.92030 0.76101 0.86667 0.87181 0.90076 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.24 9.35 -35.23 -0.33 -4.57 16 3 C 0.09 1.04 4.09 37.16 0.15 1.19 16 4 C -0.08 -0.98 0.70 -155.66 -0.11 -1.09 16 5 C -0.14 -1.41 8.23 37.16 0.31 -1.11 16 6 C -0.14 -1.52 8.22 37.16 0.31 -1.21 16 7 C 0.52 8.54 6.22 -10.98 -0.07 8.47 16 8 O -0.52 -10.33 13.68 5.55 0.08 -10.25 16 9 N -0.66 -11.34 5.12 -9.89 -0.05 -11.39 16 10 C 0.17 3.67 6.26 -83.74 -0.52 3.14 16 11 C -0.22 -4.67 8.66 -39.11 -0.34 -5.01 16 12 C -0.10 -2.16 10.00 -39.62 -0.40 -2.56 16 13 C -0.02 -0.49 7.31 -38.62 -0.28 -0.77 16 14 F -0.16 -3.90 16.71 2.25 0.04 -3.86 16 15 C 0.08 2.07 5.22 -106.78 -0.56 1.52 16 16 C -0.43 -11.65 9.30 -37.79 -0.35 -12.00 16 17 H 0.10 2.81 7.89 -52.48 -0.41 2.39 16 18 C 0.08 2.18 5.41 -17.34 -0.09 2.08 16 19 N -0.79 -20.52 13.93 55.55 0.77 -19.75 16 20 Si 0.91 20.28 24.43 -169.99 -4.15 16.12 16 21 H -0.27 -5.57 6.64 56.52 0.38 -5.20 16 22 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.24 -5.67 6.80 56.52 0.38 -5.29 16 24 C -0.25 -5.84 7.08 -38.71 -0.27 -6.12 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 29 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 31 H 0.08 0.73 7.68 -51.93 -0.40 0.33 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.76 7.68 -51.93 -0.40 0.36 16 35 H 0.06 0.61 7.47 -51.93 -0.39 0.23 16 36 H 0.40 5.66 7.67 -40.82 -0.31 5.35 16 37 H 0.12 2.42 6.43 -52.49 -0.34 2.08 16 38 H 0.11 2.15 8.06 -52.49 -0.42 1.72 16 39 H 0.29 6.69 8.30 -40.82 -0.34 6.35 16 40 H 0.11 2.46 4.18 -52.49 -0.22 2.24 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -29.58 331.43 -5.20 -34.77 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.42 Total: 5.99 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -1.12 Total: -12.07 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.72 Total: -31.14 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.25 Total: -14.82 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.86 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.15 Total: 16.12 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.58 -5.20 -34.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181943933.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.482 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds