Wall clock time and date at job start Tue Mar 31 2020 08:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00142 * 2 1 4 4 C 1.52998 * 109.47256 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47235 * 60.00118 * 4 3 2 6 6 C 1.53002 * 109.47302 * 300.00020 * 4 3 2 7 7 C 1.50702 * 109.47177 * 179.97438 * 4 3 2 8 8 O 1.21291 * 119.99996 * 0.02562 * 7 4 3 9 9 N 1.34777 * 120.00199 * 179.97438 * 7 4 3 10 10 C 1.40001 * 119.99944 * 175.45087 * 9 7 4 11 11 C 1.39373 * 119.91318 * 325.90023 * 10 9 7 12 12 C 1.38370 * 120.46947 * 180.02562 * 11 10 9 13 13 C 1.38008 * 120.28590 * 359.97438 * 12 11 10 14 14 F 1.35104 * 120.08633 * 179.97438 * 13 12 11 15 15 C 1.41000 * 119.81610 * 359.97438 * 13 12 11 16 16 C 1.41292 * 120.23084 * 179.97438 * 15 13 12 17 17 H 1.08009 * 119.99676 * 334.89861 * 16 15 13 18 18 C 1.39921 * 120.00258 * 155.17668 * 16 15 13 19 19 N 1.30857 * 120.00158 * 160.46775 * 18 16 15 20 20 Si 1.86799 * 120.00112 * 340.47087 * 18 16 15 21 21 H 1.48495 * 109.47291 * 95.24574 * 20 18 16 22 22 H 1.48495 * 109.47026 * 215.25169 * 20 18 16 23 23 H 1.48510 * 109.46742 * 335.24602 * 20 18 16 24 24 C 1.38146 * 119.91068 * 146.13223 * 10 9 7 25 25 H 1.08998 * 109.46960 * 299.99613 * 1 2 3 26 26 H 1.08998 * 109.47265 * 59.99774 * 1 2 3 27 27 H 1.09004 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46719 * 59.99906 * 3 2 1 29 29 H 1.09003 * 109.46961 * 300.00198 * 3 2 1 30 30 H 1.08997 * 109.47236 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.46844 * 300.00338 * 5 4 3 32 32 H 1.08996 * 109.46750 * 59.99942 * 5 4 3 33 33 H 1.09007 * 109.47111 * 300.00399 * 6 4 3 34 34 H 1.09000 * 109.46815 * 59.99639 * 6 4 3 35 35 H 1.08997 * 109.47128 * 180.02562 * 6 4 3 36 36 H 0.97001 * 119.99772 * 355.45547 * 9 7 4 37 37 H 1.07999 * 119.76187 * 0.02562 * 11 10 9 38 38 H 1.08000 * 119.85189 * 179.97438 * 12 11 10 39 39 H 0.96992 * 120.00213 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.14458 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9864 0.4256 -1.2502 6 6 3.9875 0.4251 1.2483 7 6 4.1484 2.5613 -0.0013 8 8 3.4355 3.5426 -0.0008 9 7 5.4888 2.7022 -0.0014 10 6 6.0586 3.9774 -0.0981 11 6 5.4334 4.9620 -0.8611 12 6 5.9867 6.2260 -0.9651 13 6 7.1653 6.5256 -0.3128 14 9 7.7023 7.7609 -0.4175 15 6 7.8075 5.5389 0.4633 16 6 9.0149 5.8360 1.1344 17 1 9.6574 6.6227 0.7671 18 6 9.3810 5.1072 2.2713 19 7 10.6277 5.0975 2.6689 20 14 8.0902 4.1479 3.2216 21 1 8.0830 2.7365 2.7602 22 1 8.4077 4.1932 4.6715 23 1 6.7536 4.7518 2.9885 24 6 7.2416 4.2549 0.5590 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 5.0730 0.3399 -1.2509 31 1 3.5430 -0.5702 -1.2502 32 1 3.6644 0.9667 -2.1399 33 1 3.6661 0.9658 2.1385 34 1 3.5441 -0.5706 1.2483 35 1 5.0741 0.3394 1.2480 36 1 6.0587 1.9201 0.0655 37 1 4.5104 4.7367 -1.3748 38 1 5.4939 6.9813 -1.5594 39 1 10.8816 4.5920 3.4567 40 1 7.7279 3.4904 1.1467 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181943933.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:02:17 Heat of formation + Delta-G solvation = -136.196383 kcal Electronic energy + Delta-G solvation = -23981.362284 eV Core-core repulsion = 20288.384049 eV Total energy + Delta-G solvation = -3692.978236 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.29750 -41.80054 -39.61003 -38.65819 -36.16474 -35.95064 -35.05669 -32.50754 -30.08393 -28.29528 -28.27965 -27.22126 -26.53220 -24.51716 -23.89831 -22.08046 -20.66529 -19.47780 -18.63559 -18.25548 -17.78076 -17.14558 -16.91565 -16.70221 -16.53702 -16.19560 -16.06269 -15.80155 -15.29005 -15.10521 -14.63824 -14.27248 -14.23444 -14.09315 -13.85724 -13.60354 -13.26772 -13.24529 -13.06136 -12.78832 -12.74782 -12.53455 -12.36841 -12.11491 -12.07767 -11.74431 -11.71386 -11.08039 -11.06092 -10.71879 -10.63776 -9.74663 -9.03271 -8.90030 -6.62541 0.39559 0.61402 1.17439 1.32352 1.44523 1.56276 1.89265 2.04463 2.47465 2.88903 3.26174 3.43969 3.76039 3.82656 3.85058 4.04730 4.14256 4.44194 4.45905 4.48460 4.56488 4.61585 4.62254 4.74208 4.75431 4.80346 4.83639 4.88388 4.89549 4.96942 5.12719 5.27264 5.29727 5.43837 5.56661 5.57340 5.67632 5.98183 6.13414 6.17683 6.46560 6.52617 6.62580 7.08813 8.04720 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.020032 B = 0.004512 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.393498 B = 6203.885745 C = 7141.961952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.394 6.394 3 C 0.090 3.910 4 C -0.071 4.071 5 C -0.133 4.133 6 C -0.139 4.139 7 C 0.521 3.479 8 O -0.556 6.556 9 N -0.658 5.658 10 C 0.180 3.820 11 C -0.209 4.209 12 C -0.090 4.090 13 C -0.053 4.053 14 F -0.166 7.166 15 C 0.067 3.933 16 C -0.471 4.471 17 H 0.057 0.943 18 C 0.054 3.946 19 N -0.829 5.829 20 Si 0.964 3.036 21 H -0.237 1.237 22 H -0.274 1.274 23 H -0.263 1.263 24 C -0.253 4.253 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.106 0.894 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.421 0.579 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.300 0.700 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.199 -15.230 -3.054 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.313 6.313 3 C 0.013 3.987 4 C -0.074 4.074 5 C -0.191 4.191 6 C -0.196 4.196 7 C 0.310 3.690 8 O -0.433 6.433 9 N -0.304 5.304 10 C 0.086 3.914 11 C -0.230 4.230 12 C -0.110 4.110 13 C -0.073 4.073 14 F -0.146 7.146 15 C 0.063 3.937 16 C -0.499 4.499 17 H 0.076 0.924 18 C -0.164 4.164 19 N -0.453 5.453 20 Si 0.786 3.214 21 H -0.161 1.161 22 H -0.201 1.201 23 H -0.187 1.187 24 C -0.274 4.274 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.124 0.876 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.259 0.741 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.111 0.889 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.337 -14.751 -2.910 21.477 hybrid contribution 0.348 0.578 0.461 0.817 sum -14.988 -14.174 -2.449 20.774 Atomic orbital electron populations 1.22934 0.79474 1.04055 1.00571 1.87761 1.21176 1.26818 1.95542 1.22081 0.91133 0.84639 1.00864 1.20696 0.94981 0.90757 1.01015 1.21818 1.02377 1.01075 0.93782 1.21868 1.02346 1.01333 0.94049 1.21113 0.81594 0.91946 0.74331 1.90703 1.61398 1.41935 1.49300 1.43457 1.07287 1.07492 1.72135 1.17458 0.92820 0.85763 0.95326 1.20388 1.03000 0.93081 1.06523 1.20760 0.93577 0.97725 0.98895 1.18038 0.97500 0.80579 1.11175 1.91271 1.86691 1.40928 1.95679 1.17590 0.92382 0.91124 0.92641 1.19360 1.03101 1.16890 1.10557 0.92433 1.26844 0.97530 0.94735 0.97282 1.69703 1.18841 1.33780 1.22968 0.85543 0.79226 0.79901 0.76688 1.16132 1.20080 1.18697 1.20575 1.00812 0.96407 1.09617 0.93765 0.93575 0.87615 0.93489 0.93052 0.90694 0.89083 0.92588 0.92962 0.88851 0.90770 0.74066 0.85420 0.84503 0.88863 0.86250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.59 16 2 O -0.39 -7.43 9.35 -148.98 -1.39 -8.83 16 3 C 0.09 1.98 4.09 71.98 0.29 2.27 16 4 C -0.07 -1.53 0.70 -52.93 -0.04 -1.57 16 5 C -0.13 -2.27 8.23 71.98 0.59 -1.68 16 6 C -0.14 -2.52 8.22 71.98 0.59 -1.92 16 7 C 0.52 15.71 6.22 87.66 0.55 16.25 16 8 O -0.56 -20.94 13.68 -3.06 -0.04 -20.98 16 9 N -0.66 -20.46 5.12 -303.60 -1.55 -22.01 16 10 C 0.18 7.30 6.26 38.09 0.24 7.53 16 11 C -0.21 -8.66 8.66 22.57 0.20 -8.46 16 12 C -0.09 -3.90 10.00 22.25 0.22 -3.68 16 13 C -0.05 -2.63 7.31 22.89 0.17 -2.47 16 14 F -0.17 -8.58 16.71 44.97 0.75 -7.83 16 15 C 0.07 3.46 5.22 -21.26 -0.11 3.35 16 16 C -0.47 -26.63 9.30 23.43 0.22 -26.41 16 17 H 0.06 3.58 7.89 -2.91 -0.02 3.56 16 18 C 0.05 2.80 5.41 85.25 0.46 3.26 16 19 N -0.83 -43.79 13.93 21.82 0.30 -43.49 16 20 Si 0.96 40.83 24.43 68.60 1.68 42.51 16 21 H -0.24 -8.70 6.64 99.48 0.66 -8.04 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 23 H -0.26 -11.98 6.80 99.48 0.68 -11.31 16 24 C -0.25 -11.45 7.08 22.84 0.16 -11.28 16 25 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 1.13 8.10 -2.38 -0.02 1.11 16 29 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 30 H 0.07 1.10 7.67 -2.39 -0.02 1.08 16 31 H 0.09 1.35 7.68 -2.39 -0.02 1.33 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.09 1.45 7.68 -2.39 -0.02 1.43 16 35 H 0.07 1.16 7.47 -2.39 -0.02 1.14 16 36 H 0.42 10.18 7.67 -92.71 -0.71 9.47 16 37 H 0.13 5.04 6.43 -2.91 -0.02 5.02 16 38 H 0.14 5.09 8.06 -2.91 -0.02 5.07 16 39 H 0.30 13.99 8.30 -92.71 -0.77 13.22 16 40 H 0.12 5.11 4.18 -2.91 -0.01 5.09 16 Total: -1.00 -65.40 331.43 4.81 -60.59 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.28 Total: 23.25 kcal Atomic # 6 Polarization: -28.00 SS G_CDS: 4.79 Total: -23.21 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: -1.25 Total: -65.50 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -1.44 Total: -29.81 kcal Atomic # 9 Polarization: -8.58 SS G_CDS: 0.75 Total: -7.83 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.68 Total: 42.51 kcal Total: -65.40 4.81 -60.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181943933.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.604 kcal (2) G-P(sol) polarization free energy of solvation -65.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds