Wall clock time and date at job start Tue Mar 31 2020 07:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47507 * 2 1 4 4 C 1.52997 * 109.47384 * 239.99479 * 2 1 3 5 5 C 1.53001 * 109.46678 * 119.99700 * 2 1 3 6 6 H 1.08996 * 109.47402 * 304.24199 * 5 2 1 7 7 O 1.42900 * 109.47147 * 184.24325 * 5 2 1 8 8 C 1.50704 * 109.47240 * 64.24284 * 5 2 1 9 9 O 1.21287 * 119.99791 * 113.24748 * 8 5 2 10 10 N 1.34774 * 119.99776 * 292.97023 * 8 5 2 11 11 C 1.40010 * 119.99741 * 176.03298 * 10 8 5 12 12 C 1.39363 * 119.91367 * 325.85888 * 11 10 8 13 13 C 1.38367 * 120.46884 * 179.71997 * 12 11 10 14 14 C 1.38006 * 120.28827 * 0.55235 * 13 12 11 15 15 F 1.35096 * 120.09099 * 179.70517 * 14 13 12 16 16 C 1.41005 * 119.81104 * 359.71922 * 14 13 12 17 17 C 1.41292 * 120.23029 * 179.97438 * 16 14 13 18 18 H 1.08006 * 119.99627 * 27.96830 * 17 16 14 19 19 C 1.39925 * 120.00322 * 207.96381 * 17 16 14 20 20 N 1.30852 * 119.99801 * 11.54406 * 19 17 16 21 21 Si 1.86803 * 120.00066 * 191.54000 * 19 17 16 22 22 H 1.48499 * 109.47018 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46630 * 120.00168 * 21 19 17 24 24 H 1.48496 * 109.47188 * 240.00341 * 21 19 17 25 25 C 1.38141 * 119.90669 * 146.12750 * 11 10 8 26 26 H 1.09002 * 109.47465 * 298.45935 * 1 2 3 27 27 H 1.09004 * 109.46688 * 58.45423 * 1 2 3 28 28 H 1.08999 * 109.47387 * 178.44907 * 1 2 3 29 29 H 1.08995 * 109.47183 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46693 * 299.99724 * 3 2 1 31 31 H 1.08996 * 109.47019 * 59.99209 * 3 2 1 32 32 H 1.08999 * 109.47376 * 300.00495 * 4 2 1 33 33 H 1.09004 * 109.47006 * 60.00160 * 4 2 1 34 34 H 1.08997 * 109.47056 * 180.02562 * 4 2 1 35 35 H 0.96702 * 114.00046 * 299.99672 * 7 5 2 36 36 H 0.97001 * 120.00325 * 356.04294 * 10 8 5 37 37 H 1.08003 * 119.76215 * 359.97438 * 12 11 10 38 38 H 1.07998 * 119.85467 * 180.24942 * 13 12 11 39 39 H 0.96994 * 119.99984 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.14672 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0398 -0.7212 1.2493 6 1 1.6158 -0.2531 2.1376 7 8 3.4654 -0.6355 1.3003 8 6 1.6251 -2.1692 1.1980 9 8 2.4647 -3.0366 1.0808 10 7 0.3218 -2.5004 1.2878 11 6 -0.0712 -3.8378 1.1569 12 6 0.6202 -4.6838 0.2918 13 6 0.2453 -6.0090 0.1579 14 6 -0.8263 -6.5048 0.8723 15 9 -1.1926 -7.7978 0.7340 16 6 -1.5379 -5.6579 1.7467 17 6 -2.6368 -6.1561 2.4821 18 1 -2.6788 -7.2020 2.7482 19 6 -3.6704 -5.2945 2.8656 20 7 -3.7394 -4.0896 2.3599 21 14 -4.9518 -5.8642 4.0996 22 1 -4.6513 -7.2570 4.5179 23 1 -4.9246 -4.9742 5.2880 24 1 -6.2978 -5.8142 3.4744 25 6 -1.1468 -4.3137 1.8814 26 1 -0.3634 0.4897 0.9035 27 1 -0.3633 0.5377 -0.8759 28 1 -0.3634 -1.0273 -0.0278 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 1.6766 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2488 35 1 3.9108 -1.0331 0.5396 36 1 -0.3440 -1.8122 1.4431 37 1 1.4572 -4.3034 -0.2750 38 1 0.7906 -6.6569 -0.5124 39 1 -4.4556 -3.4922 2.6260 40 1 -1.6847 -3.6566 2.5487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182743598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:24 Heat of formation + Delta-G solvation = -123.431373 kcal Electronic energy + Delta-G solvation = -24330.972357 eV Core-core repulsion = 20638.547654 eV Total energy + Delta-G solvation = -3692.424703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.24640 -40.58690 -38.07333 -36.76796 -35.19428 -34.11989 -33.31088 -29.83787 -28.94391 -27.48565 -27.17415 -26.64832 -25.35680 -21.83185 -21.47454 -19.99265 -19.46915 -17.96572 -17.58823 -16.34517 -16.12804 -15.94133 -15.42086 -15.15405 -14.69622 -14.45798 -14.16870 -14.01011 -13.60907 -13.27824 -13.08062 -12.68225 -12.62877 -12.35067 -12.21161 -12.07362 -11.94398 -11.70736 -11.55676 -11.51297 -11.22860 -11.09675 -11.03129 -10.94115 -10.73642 -10.40717 -10.26590 -9.70822 -9.47160 -9.26801 -8.93080 -7.62089 -7.05892 -6.76691 -4.51845 2.32725 2.66786 2.98039 3.02138 3.08895 3.15963 3.49417 3.85968 4.22435 4.44061 4.49785 4.59569 4.79351 4.97519 5.21375 5.32971 5.38803 5.48983 5.54132 5.64082 5.72939 5.80805 5.85783 5.90894 6.02352 6.05993 6.14540 6.20652 6.47934 6.62678 6.78090 6.81477 7.08008 7.38897 7.42594 7.51373 7.59323 7.85931 7.89979 8.12180 8.38831 8.57500 8.66568 8.75069 10.06659 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.018962 B = 0.004535 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.269045 B = 6173.353919 C = 7079.557692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.093 4.093 3 C -0.134 4.134 4 C -0.151 4.151 5 C 0.101 3.899 6 H 0.121 0.879 7 O -0.536 6.536 8 C 0.481 3.519 9 O -0.520 6.520 10 N -0.661 5.661 11 C 0.136 3.864 12 C -0.202 4.202 13 C -0.115 4.115 14 C -0.029 4.029 15 F -0.162 7.162 16 C 0.097 3.903 17 C -0.452 4.452 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.800 5.800 21 Si 0.915 3.085 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.160 4.160 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.380 0.620 36 H 0.406 0.594 37 H 0.110 0.890 38 H 0.105 0.895 39 H 0.281 0.719 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.971 11.512 -3.421 12.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.094 4.094 3 C -0.191 4.191 4 C -0.208 4.208 5 C 0.038 3.962 6 H 0.138 0.862 7 O -0.341 6.341 8 C 0.267 3.733 9 O -0.395 6.395 10 N -0.309 5.309 11 C 0.044 3.956 12 C -0.223 4.223 13 C -0.134 4.134 14 C -0.049 4.049 15 F -0.142 7.142 16 C 0.093 3.907 17 C -0.482 4.482 18 H 0.102 0.898 19 C -0.142 4.142 20 N -0.426 5.426 21 Si 0.739 3.261 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.198 1.198 25 C -0.182 4.182 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.230 0.770 36 H 0.244 0.756 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.092 0.908 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.319 11.400 -2.951 12.921 hybrid contribution -1.013 -0.353 0.037 1.073 sum 4.306 11.047 -2.914 12.210 Atomic orbital electron populations 1.22230 0.93480 1.03759 1.02785 1.21139 0.96835 0.96596 0.94837 1.21768 1.01683 0.93881 1.01781 1.21953 1.01037 1.00957 0.96878 1.21951 0.83130 0.91446 0.99683 0.86189 1.86549 1.16135 1.81592 1.49863 1.21478 0.82861 0.92039 0.76883 1.90717 1.50583 1.50356 1.47878 1.43908 1.07788 1.08595 1.70572 1.17635 0.97150 0.82766 0.98011 1.20116 1.04068 0.93314 1.04814 1.20387 0.96819 0.95690 1.00552 1.17956 1.02036 0.79702 1.05213 1.91273 1.91894 1.35630 1.95356 1.17371 0.92010 0.90978 0.90328 1.19524 1.02313 0.96867 1.29467 0.89843 1.25877 0.98750 0.94310 0.95245 1.69774 1.30378 1.07036 1.35432 0.86139 0.79591 0.80273 0.80086 1.18288 1.19662 1.19828 1.20965 0.98065 0.96810 1.02336 0.91899 0.91549 0.90635 0.91861 0.92443 0.92443 0.91864 0.91786 0.92400 0.77033 0.75639 0.87182 0.87734 0.90837 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 7.42 37.15 0.28 -1.38 16 2 C -0.09 -0.95 0.63 -154.51 -0.10 -1.05 16 3 C -0.13 -1.15 8.29 37.16 0.31 -0.84 16 4 C -0.15 -1.61 7.94 37.16 0.30 -1.31 16 5 C 0.10 1.26 2.78 -27.88 -0.08 1.18 16 6 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 7 O -0.54 -6.99 12.15 -55.05 -0.67 -7.66 16 8 C 0.48 8.05 5.34 -10.98 -0.06 7.99 16 9 O -0.52 -10.60 14.00 -14.27 -0.20 -10.80 16 10 N -0.66 -11.53 4.07 -9.90 -0.04 -11.57 16 11 C 0.14 3.01 6.26 -83.74 -0.52 2.49 16 12 C -0.20 -4.57 8.66 -39.12 -0.34 -4.91 16 13 C -0.11 -2.68 10.00 -39.62 -0.40 -3.07 16 14 C -0.03 -0.73 7.31 -38.62 -0.28 -1.01 16 15 F -0.16 -4.13 16.75 2.25 0.04 -4.09 16 16 C 0.10 2.56 5.56 -106.78 -0.59 1.96 16 17 C -0.45 -11.90 8.76 -37.79 -0.33 -12.23 16 18 H 0.08 2.19 7.76 -52.48 -0.41 1.79 16 19 C 0.08 1.81 5.24 -17.34 -0.09 1.72 16 20 N -0.80 -19.29 10.83 55.55 0.60 -18.69 16 21 Si 0.91 18.23 29.58 -169.99 -5.03 13.20 16 22 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 23 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 C -0.16 -3.90 8.56 -38.71 -0.33 -4.23 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.91 5.22 -51.93 -0.27 0.64 16 29 H 0.06 0.55 7.57 -51.93 -0.39 0.16 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.83 7.09 -51.93 -0.37 0.47 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.56 6.87 -51.93 -0.36 0.20 16 35 H 0.38 4.32 7.22 45.56 0.33 4.65 16 36 H 0.41 6.01 6.46 -40.82 -0.26 5.75 16 37 H 0.11 2.41 6.42 -52.48 -0.34 2.07 16 38 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 39 H 0.28 6.10 8.30 -40.82 -0.34 5.76 16 40 H 0.13 3.22 6.18 -52.49 -0.32 2.90 16 LS Contribution 327.44 15.07 4.93 4.93 Total: -1.00 -29.31 327.44 -7.09 -36.41 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -4.49 Total: 12.97 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -2.24 Total: -14.69 kcal Atomic # 7 Polarization: -30.82 SS G_CDS: 0.56 Total: -30.26 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.87 Total: -18.46 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.04 Total: -4.09 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.31 -7.09 -36.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182743598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.025 kcal (2) G-P(sol) polarization free energy of solvation -29.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds