Wall clock time and date at job start Tue Mar 31 2020 07:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47507 * 2 1 4 4 C 1.52997 * 109.47384 * 239.99479 * 2 1 3 5 5 C 1.53001 * 109.46678 * 119.99700 * 2 1 3 6 6 H 1.08996 * 109.47402 * 304.24199 * 5 2 1 7 7 O 1.42900 * 109.47147 * 184.24325 * 5 2 1 8 8 C 1.50704 * 109.47240 * 64.24284 * 5 2 1 9 9 O 1.21287 * 119.99791 * 113.24748 * 8 5 2 10 10 N 1.34774 * 119.99776 * 292.97023 * 8 5 2 11 11 C 1.40010 * 119.99741 * 176.03298 * 10 8 5 12 12 C 1.39363 * 119.91367 * 325.85888 * 11 10 8 13 13 C 1.38367 * 120.46884 * 179.71997 * 12 11 10 14 14 C 1.38006 * 120.28827 * 0.55235 * 13 12 11 15 15 F 1.35096 * 120.09099 * 179.70517 * 14 13 12 16 16 C 1.41005 * 119.81104 * 359.71922 * 14 13 12 17 17 C 1.41292 * 120.23029 * 179.97438 * 16 14 13 18 18 H 1.08006 * 119.99627 * 27.96830 * 17 16 14 19 19 C 1.39925 * 120.00322 * 207.96381 * 17 16 14 20 20 N 1.30852 * 119.99801 * 11.54406 * 19 17 16 21 21 Si 1.86803 * 120.00066 * 191.54000 * 19 17 16 22 22 H 1.48499 * 109.47018 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46630 * 120.00168 * 21 19 17 24 24 H 1.48496 * 109.47188 * 240.00341 * 21 19 17 25 25 C 1.38141 * 119.90669 * 146.12750 * 11 10 8 26 26 H 1.09002 * 109.47465 * 298.45935 * 1 2 3 27 27 H 1.09004 * 109.46688 * 58.45423 * 1 2 3 28 28 H 1.08999 * 109.47387 * 178.44907 * 1 2 3 29 29 H 1.08995 * 109.47183 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.46693 * 299.99724 * 3 2 1 31 31 H 1.08996 * 109.47019 * 59.99209 * 3 2 1 32 32 H 1.08999 * 109.47376 * 300.00495 * 4 2 1 33 33 H 1.09004 * 109.47006 * 60.00160 * 4 2 1 34 34 H 1.08997 * 109.47056 * 180.02562 * 4 2 1 35 35 H 0.96702 * 114.00046 * 299.99672 * 7 5 2 36 36 H 0.97001 * 120.00325 * 356.04294 * 10 8 5 37 37 H 1.08003 * 119.76215 * 359.97438 * 12 11 10 38 38 H 1.07998 * 119.85467 * 180.24942 * 13 12 11 39 39 H 0.96994 * 119.99984 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.14672 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0398 -0.7212 1.2493 6 1 1.6158 -0.2531 2.1376 7 8 3.4654 -0.6355 1.3003 8 6 1.6251 -2.1692 1.1980 9 8 2.4647 -3.0366 1.0808 10 7 0.3218 -2.5004 1.2878 11 6 -0.0712 -3.8378 1.1569 12 6 0.6202 -4.6838 0.2918 13 6 0.2453 -6.0090 0.1579 14 6 -0.8263 -6.5048 0.8723 15 9 -1.1926 -7.7978 0.7340 16 6 -1.5379 -5.6579 1.7467 17 6 -2.6368 -6.1561 2.4821 18 1 -2.6788 -7.2020 2.7482 19 6 -3.6704 -5.2945 2.8656 20 7 -3.7394 -4.0896 2.3599 21 14 -4.9518 -5.8642 4.0996 22 1 -4.6513 -7.2570 4.5179 23 1 -4.9246 -4.9742 5.2880 24 1 -6.2978 -5.8142 3.4744 25 6 -1.1468 -4.3137 1.8814 26 1 -0.3634 0.4897 0.9035 27 1 -0.3633 0.5377 -0.8759 28 1 -0.3634 -1.0273 -0.0278 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 1.6766 -1.7490 -1.2491 33 1 1.6767 -0.2075 -2.1392 34 1 3.1300 -0.7217 -1.2488 35 1 3.9108 -1.0331 0.5396 36 1 -0.3440 -1.8122 1.4431 37 1 1.4572 -4.3034 -0.2750 38 1 0.7906 -6.6569 -0.5124 39 1 -4.4556 -3.4922 2.6260 40 1 -1.6847 -3.6566 2.5487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182743598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:24 Heat of formation + Delta-G solvation = -140.861092 kcal Electronic energy + Delta-G solvation = -24331.728167 eV Core-core repulsion = 20638.547654 eV Total energy + Delta-G solvation = -3693.180513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.21881 -41.88669 -39.53255 -38.22175 -36.43548 -35.65331 -34.91484 -31.72347 -30.48496 -28.30981 -28.08035 -27.83805 -27.21386 -23.57540 -23.11085 -21.56717 -20.44717 -19.44330 -19.16046 -18.06651 -17.72397 -17.29990 -16.79967 -16.71975 -16.09546 -16.00171 -15.64990 -15.55072 -14.89518 -14.54612 -14.46032 -14.28130 -13.96029 -13.63720 -13.53466 -13.38954 -13.06231 -13.01923 -12.93116 -12.78720 -12.71034 -12.53060 -12.46682 -12.03534 -11.89471 -11.76507 -11.53247 -11.39265 -11.20326 -10.86557 -10.41136 -9.52739 -8.87278 -8.57478 -6.47677 0.57727 0.83840 1.39070 1.42369 1.53140 1.63247 2.12089 2.20109 2.64785 3.23497 3.44707 3.54047 3.67329 3.80599 4.00296 4.04084 4.25488 4.36905 4.46496 4.62127 4.72429 4.78968 4.87623 4.91602 4.96162 4.98413 5.00840 5.04501 5.10724 5.22333 5.28565 5.35485 5.48090 5.58266 5.70986 5.72885 5.94927 6.09377 6.37956 6.51063 6.64239 6.74811 6.80358 7.17430 8.26679 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.018962 B = 0.004535 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.269045 B = 6173.353919 C = 7079.557692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.084 4.084 3 C -0.129 4.129 4 C -0.152 4.152 5 C 0.110 3.890 6 H 0.140 0.860 7 O -0.542 6.542 8 C 0.481 3.519 9 O -0.558 6.558 10 N -0.653 5.653 11 C 0.148 3.852 12 C -0.207 4.207 13 C -0.111 4.111 14 C -0.065 4.065 15 F -0.169 7.169 16 C 0.072 3.928 17 C -0.491 4.491 18 H 0.069 0.931 19 C 0.041 3.959 20 N -0.815 5.815 21 Si 0.985 3.015 22 H -0.267 1.267 23 H -0.257 1.257 24 H -0.262 1.262 25 C -0.174 4.174 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.387 0.613 36 H 0.419 0.581 37 H 0.119 0.881 38 H 0.127 0.873 39 H 0.294 0.706 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.725 13.991 -3.154 15.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.085 4.085 3 C -0.186 4.186 4 C -0.209 4.209 5 C 0.047 3.953 6 H 0.158 0.842 7 O -0.348 6.348 8 C 0.270 3.730 9 O -0.436 6.436 10 N -0.302 5.302 11 C 0.054 3.946 12 C -0.228 4.228 13 C -0.131 4.131 14 C -0.086 4.086 15 F -0.148 7.148 16 C 0.068 3.932 17 C -0.520 4.520 18 H 0.087 0.913 19 C -0.174 4.174 20 N -0.441 5.441 21 Si 0.806 3.194 22 H -0.191 1.191 23 H -0.181 1.181 24 H -0.187 1.187 25 C -0.196 4.196 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.237 0.763 36 H 0.260 0.740 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.105 0.895 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.085 13.927 -2.701 15.070 hybrid contribution -0.864 -1.055 -0.113 1.369 sum 4.220 12.872 -2.813 13.835 Atomic orbital electron populations 1.22240 0.93215 1.02535 1.04371 1.21101 0.96929 0.97366 0.93094 1.21737 1.01625 0.92299 1.02942 1.21972 1.01644 0.99344 0.97941 1.22082 0.83088 0.88219 1.01869 0.84225 1.86540 1.16328 1.81393 1.50560 1.22395 0.81796 0.93764 0.75046 1.90694 1.51445 1.52038 1.49451 1.43918 1.08820 1.07036 1.70437 1.17681 0.95798 0.84726 0.96358 1.20307 1.04257 0.93267 1.04971 1.20649 0.96055 0.96329 1.00056 1.18218 1.03655 0.79805 1.06878 1.91234 1.92128 1.35955 1.95528 1.17745 0.92539 0.92150 0.90764 1.19671 1.03863 0.96874 1.31560 0.91251 1.26637 1.00082 0.94264 0.96456 1.69772 1.31203 1.07618 1.35481 0.85104 0.76995 0.79456 0.77875 1.19089 1.18083 1.18702 1.20923 0.99143 0.96254 1.03287 0.90172 0.90256 0.93069 0.91939 0.91079 0.91540 0.94887 0.90319 0.91547 0.76285 0.73997 0.86338 0.85555 0.89526 0.85299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 7.42 71.98 0.53 -2.36 16 2 C -0.08 -1.49 0.63 -52.18 -0.03 -1.52 16 3 C -0.13 -1.74 8.29 71.98 0.60 -1.15 16 4 C -0.15 -2.96 7.94 71.98 0.57 -2.39 16 5 C 0.11 2.51 2.78 29.85 0.08 2.59 16 6 H 0.14 2.68 8.14 -2.39 -0.02 2.67 16 7 O -0.54 -13.00 12.15 -130.03 -1.58 -14.58 16 8 C 0.48 15.65 5.34 87.66 0.47 16.12 16 9 O -0.56 -22.62 14.00 15.90 0.22 -22.40 16 10 N -0.65 -22.42 4.07 -303.61 -1.23 -23.66 16 11 C 0.15 6.59 6.26 38.08 0.24 6.83 16 12 C -0.21 -9.46 8.66 22.57 0.20 -9.26 16 13 C -0.11 -5.29 10.00 22.25 0.22 -5.06 16 14 C -0.07 -3.45 7.31 22.89 0.17 -3.29 16 15 F -0.17 -8.96 16.75 44.97 0.75 -8.21 16 16 C 0.07 3.92 5.56 -21.26 -0.12 3.80 16 17 C -0.49 -26.70 8.76 23.43 0.21 -26.49 16 18 H 0.07 3.83 7.76 -2.91 -0.02 3.80 16 19 C 0.04 2.01 5.24 85.25 0.45 2.46 16 20 N -0.82 -39.15 10.83 21.82 0.24 -38.91 16 21 Si 0.99 37.08 29.58 68.60 2.03 39.11 16 22 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 23 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 24 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 25 C -0.17 -8.67 8.56 22.83 0.20 -8.48 16 26 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.05 1.16 5.22 -2.39 -0.01 1.15 16 29 H 0.06 0.88 7.57 -2.39 -0.02 0.86 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.03 0.84 7.09 -2.39 -0.02 0.82 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.16 6.87 -2.39 -0.02 1.14 16 35 H 0.39 8.17 7.22 -74.06 -0.53 7.63 16 36 H 0.42 11.99 6.46 -92.71 -0.60 11.39 16 37 H 0.12 5.20 6.42 -2.91 -0.02 5.18 16 38 H 0.13 5.28 8.06 -2.91 -0.02 5.25 16 39 H 0.29 12.44 8.30 -92.71 -0.77 11.67 16 40 H 0.13 6.39 6.18 -2.91 -0.02 6.37 16 Total: -1.00 -64.50 327.44 4.16 -60.35 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: -0.04 Total: 36.51 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 3.77 Total: -28.21 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -1.00 Total: -62.57 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -1.36 Total: -36.98 kcal Atomic # 9 Polarization: -8.96 SS G_CDS: 0.75 Total: -8.21 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Total: -64.50 4.16 -60.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182743598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.513 kcal (2) G-P(sol) polarization free energy of solvation -64.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds