Wall clock time and date at job start Tue Mar 31 2020 08:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 H 1.08997 * 109.47201 * 304.90261 * 3 2 1 5 5 C 1.50701 * 109.46964 * 184.90381 * 3 2 1 6 6 H 1.08004 * 120.00306 * 245.45403 * 5 3 2 7 7 C 1.37878 * 120.00320 * 65.45423 * 5 3 2 8 8 N 1.31513 * 119.99664 * 9.46895 * 7 5 3 9 9 Si 1.86801 * 120.00297 * 189.46868 * 7 5 3 10 10 H 1.48506 * 109.46776 * 84.99427 * 9 7 5 11 11 H 1.48497 * 109.47181 * 204.99172 * 9 7 5 12 12 H 1.48497 * 109.47159 * 324.99730 * 9 7 5 13 13 N 1.46501 * 109.47016 * 64.90548 * 3 2 1 14 14 C 1.34773 * 119.99589 * 274.99892 * 13 3 2 15 15 O 1.21278 * 120.00445 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99659 * 180.02562 * 14 13 3 17 17 H 1.09004 * 109.47099 * 54.99404 * 16 14 13 18 18 O 1.42897 * 109.47021 * 174.99622 * 16 14 13 19 19 C 1.52998 * 109.46963 * 294.99706 * 16 14 13 20 20 C 1.50698 * 109.47146 * 174.99917 * 19 16 14 21 21 C 1.38274 * 119.98776 * 90.00228 * 20 19 16 22 22 C 1.38219 * 120.05263 * 180.02562 * 21 20 19 23 23 C 1.38212 * 120.02493 * 0.24627 * 22 21 20 24 24 C 1.38440 * 119.97703 * 359.43439 * 23 22 21 25 25 F 1.35101 * 120.02763 * 180.29703 * 24 23 22 26 26 C 1.38174 * 119.99082 * 269.98009 * 20 19 16 27 27 H 1.09002 * 109.46895 * 300.00180 * 1 2 3 28 28 H 1.09002 * 109.47250 * 59.99616 * 1 2 3 29 29 H 1.08996 * 109.47571 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46960 * 240.00355 * 2 1 3 31 31 H 1.09002 * 109.47250 * 120.00384 * 2 1 3 32 32 H 0.97008 * 120.00134 * 180.02562 * 8 7 5 33 33 H 0.97002 * 119.99525 * 94.99729 * 13 3 2 34 34 H 0.96706 * 113.99623 * 60.00054 * 18 16 14 35 35 H 1.09003 * 109.46992 * 55.00265 * 19 16 14 36 36 H 1.08998 * 109.47574 * 295.00102 * 19 16 14 37 37 H 1.08002 * 119.96616 * 359.97438 * 21 20 19 38 38 H 1.08002 * 119.98695 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.01421 * 179.72194 * 23 22 21 40 40 H 1.08003 * 120.01090 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9811 -0.8428 5 6 3.5421 1.4442 -0.1215 6 1 4.1494 1.8090 0.6938 7 6 4.1412 0.9801 -1.2733 8 7 3.4096 0.7116 -2.3326 9 14 5.9919 0.7328 -1.3292 10 1 6.3289 -0.6067 -0.7838 11 1 6.4618 0.8275 -2.7347 12 1 6.6562 1.7808 -0.5134 13 7 1.6505 2.0982 1.2509 14 6 0.4330 2.6651 1.3637 15 8 -0.3403 2.6321 0.4300 16 6 0.0325 3.3401 2.6503 17 1 0.7730 4.0968 2.9094 18 8 -1.2445 3.9599 2.4855 19 6 -0.0463 2.2994 3.7691 20 6 -0.3260 2.9902 5.0788 21 6 -1.6311 3.1913 5.4892 22 6 -1.8892 3.8252 6.6900 23 6 -0.8429 4.2634 7.4797 24 6 0.4642 4.0568 7.0731 25 9 1.4878 4.4793 7.8471 26 6 0.7216 3.4220 5.8696 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8310 0.3847 -3.1430 33 1 2.2688 2.1242 1.9978 34 1 -1.9534 3.3444 2.2534 35 1 0.9014 1.7649 3.8354 36 1 -0.8475 1.5929 3.5525 37 1 -2.4493 2.8535 4.8704 38 1 -2.9090 3.9822 7.0093 39 1 -1.0449 4.7627 8.4158 40 1 1.7409 3.2641 5.5492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184152070.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:10 Heat of formation + Delta-G solvation = -124.935639 kcal Electronic energy + Delta-G solvation = -23623.129302 eV Core-core repulsion = 19930.639369 eV Total energy + Delta-G solvation = -3692.489933 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.03722 -39.94256 -38.96603 -36.56076 -34.93927 -33.19115 -32.30530 -31.16814 -30.71021 -28.99689 -26.93445 -24.73622 -23.00107 -22.86923 -21.59676 -20.52929 -19.46940 -18.02652 -17.34640 -16.63999 -16.37383 -16.10671 -16.00407 -15.74513 -15.33800 -14.88837 -14.46942 -14.22382 -14.05403 -13.53497 -13.46504 -13.19272 -12.76094 -12.41882 -12.19463 -12.03603 -11.82701 -11.65944 -11.48883 -11.30342 -11.23751 -11.05708 -10.84136 -10.66780 -10.38918 -10.26574 -9.77087 -9.24056 -9.16736 -8.92130 -8.69462 -8.52613 -7.93921 -6.18909 -4.24740 0.96859 1.01208 3.15974 3.22440 3.29626 3.30588 3.42944 3.91277 4.05028 4.32245 4.34799 4.54983 4.56920 4.83124 4.95683 4.99542 5.04402 5.14333 5.20313 5.41379 5.52403 5.66065 5.79390 5.88750 5.92224 6.10457 6.26452 6.29364 6.32457 6.50827 6.70588 6.89175 7.08604 7.23724 7.32460 7.50634 7.60753 7.66930 7.78163 8.01932 8.56796 8.73267 9.01593 9.41273 10.89176 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.003668 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.880236 B = 7630.954052 C = 8637.155188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.267 3.733 4 H 0.056 0.944 5 C -0.539 4.539 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.879 5.879 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.703 5.703 14 C 0.473 3.527 15 O -0.539 6.539 16 C 0.096 3.904 17 H 0.118 0.882 18 O -0.537 6.537 19 C -0.112 4.112 20 C -0.042 4.042 21 C -0.114 4.114 22 C -0.091 4.091 23 C -0.161 4.161 24 C 0.097 3.903 25 F -0.142 7.142 26 C -0.152 4.152 27 H 0.039 0.961 28 H 0.051 0.949 29 H 0.024 0.976 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.379 0.621 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.408 3.106 17.304 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.166 3.834 4 H 0.074 0.926 5 C -0.578 4.578 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.515 5.515 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.352 5.352 14 C 0.256 3.744 15 O -0.418 6.418 16 C 0.033 3.967 17 H 0.136 0.864 18 O -0.341 6.341 19 C -0.149 4.149 20 C -0.042 4.042 21 C -0.132 4.132 22 C -0.109 4.109 23 C -0.180 4.180 24 C 0.078 3.922 25 F -0.120 7.120 26 C -0.171 4.171 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.227 0.773 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.567 3.565 16.575 18.996 hybrid contribution 1.318 -0.604 0.293 1.479 sum -7.249 2.961 16.868 18.596 Atomic orbital electron populations 1.21842 0.98106 0.98179 1.01375 1.21849 0.92896 0.99857 1.01252 1.18819 0.94436 0.88890 0.81299 0.92593 1.21168 0.90527 1.44205 1.01865 0.92072 1.24885 0.98490 0.95093 0.94964 1.69981 1.35806 1.43606 1.02154 0.86533 0.84963 0.78732 0.77317 1.20404 1.21155 1.19884 1.46539 1.14603 1.55501 1.18566 1.21143 0.83424 0.79871 0.89923 1.90696 1.51726 1.59296 1.40048 1.21873 0.87926 0.95571 0.91342 0.86404 1.86570 1.17156 1.38259 1.92114 1.21339 1.04772 0.97612 0.91222 1.19554 0.92732 0.96864 0.95048 1.21112 0.96346 0.99422 0.96303 1.20988 0.98823 0.96971 0.94089 1.21122 0.91161 1.03747 1.01944 1.17675 0.84438 0.99420 0.90644 1.91500 1.58312 1.88035 1.74198 1.21083 1.00718 1.01294 0.93955 0.94216 0.92955 0.95717 0.90199 0.94667 0.92509 0.77987 0.77282 0.88850 0.89485 0.85308 0.85087 0.85029 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.51 37.16 0.32 -2.53 16 2 C -0.12 -2.72 5.50 -26.73 -0.15 -2.87 16 3 C 0.27 6.41 2.11 -69.08 -0.15 6.27 16 4 H 0.06 1.60 7.52 -51.93 -0.39 1.21 16 5 C -0.54 -13.80 8.66 -34.44 -0.30 -14.10 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.84 5.16 -17.82 -0.09 1.75 16 8 N -0.88 -24.42 12.16 55.43 0.67 -23.75 16 9 Si 0.90 20.24 29.55 -169.99 -5.02 15.22 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.70 -13.37 4.92 -54.93 -0.27 -13.64 16 14 C 0.47 8.52 5.73 -10.98 -0.06 8.46 16 15 O -0.54 -11.79 13.46 -14.30 -0.19 -11.98 16 16 C 0.10 1.28 3.37 -27.88 -0.09 1.19 16 17 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 18 O -0.54 -7.39 12.49 -55.09 -0.69 -8.08 16 19 C -0.11 -1.18 5.00 -27.89 -0.14 -1.32 16 20 C -0.04 -0.43 4.97 -104.63 -0.52 -0.95 16 21 C -0.11 -1.06 9.40 -39.58 -0.37 -1.43 16 22 C -0.09 -0.77 10.04 -39.60 -0.40 -1.17 16 23 C -0.16 -1.49 10.03 -39.52 -0.40 -1.89 16 24 C 0.10 1.06 7.30 -39.42 -0.29 0.77 16 25 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 26 C -0.15 -1.60 9.68 -39.52 -0.38 -1.99 16 27 H 0.04 0.77 5.65 -51.93 -0.29 0.48 16 28 H 0.05 1.18 7.84 -51.93 -0.41 0.77 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 2.03 6.80 -51.93 -0.35 1.68 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.39 6.28 8.23 -40.82 -0.34 5.95 16 34 H 0.38 4.36 8.79 45.56 0.40 4.76 16 35 H 0.09 0.93 7.71 -51.93 -0.40 0.53 16 36 H 0.09 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 339.95 15.07 5.12 5.12 Total: -1.00 -30.67 339.95 -8.06 -38.73 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -4.70 Total: 9.81 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -3.02 Total: -9.81 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.40 Total: -37.39 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.88 Total: -20.06 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.67 -8.06 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184152070.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.207 kcal (2) G-P(sol) polarization free energy of solvation -30.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds