Wall clock time and date at job start Tue Mar 31 2020 08:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 H 1.08997 * 109.47201 * 304.90261 * 3 2 1 5 5 C 1.50701 * 109.46964 * 184.90381 * 3 2 1 6 6 H 1.08004 * 120.00306 * 245.45403 * 5 3 2 7 7 C 1.37878 * 120.00320 * 65.45423 * 5 3 2 8 8 N 1.31513 * 119.99664 * 9.46895 * 7 5 3 9 9 Si 1.86801 * 120.00297 * 189.46868 * 7 5 3 10 10 H 1.48506 * 109.46776 * 84.99427 * 9 7 5 11 11 H 1.48497 * 109.47181 * 204.99172 * 9 7 5 12 12 H 1.48497 * 109.47159 * 324.99730 * 9 7 5 13 13 N 1.46501 * 109.47016 * 64.90548 * 3 2 1 14 14 C 1.34773 * 119.99589 * 274.99892 * 13 3 2 15 15 O 1.21278 * 120.00445 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99659 * 180.02562 * 14 13 3 17 17 H 1.09004 * 109.47099 * 54.99404 * 16 14 13 18 18 O 1.42897 * 109.47021 * 174.99622 * 16 14 13 19 19 C 1.52998 * 109.46963 * 294.99706 * 16 14 13 20 20 C 1.50698 * 109.47146 * 174.99917 * 19 16 14 21 21 C 1.38274 * 119.98776 * 90.00228 * 20 19 16 22 22 C 1.38219 * 120.05263 * 180.02562 * 21 20 19 23 23 C 1.38212 * 120.02493 * 0.24627 * 22 21 20 24 24 C 1.38440 * 119.97703 * 359.43439 * 23 22 21 25 25 F 1.35101 * 120.02763 * 180.29703 * 24 23 22 26 26 C 1.38174 * 119.99082 * 269.98009 * 20 19 16 27 27 H 1.09002 * 109.46895 * 300.00180 * 1 2 3 28 28 H 1.09002 * 109.47250 * 59.99616 * 1 2 3 29 29 H 1.08996 * 109.47571 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46960 * 240.00355 * 2 1 3 31 31 H 1.09002 * 109.47250 * 120.00384 * 2 1 3 32 32 H 0.97008 * 120.00134 * 180.02562 * 8 7 5 33 33 H 0.97002 * 119.99525 * 94.99729 * 13 3 2 34 34 H 0.96706 * 113.99623 * 60.00054 * 18 16 14 35 35 H 1.09003 * 109.46992 * 55.00265 * 19 16 14 36 36 H 1.08998 * 109.47574 * 295.00102 * 19 16 14 37 37 H 1.08002 * 119.96616 * 359.97438 * 21 20 19 38 38 H 1.08002 * 119.98695 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.01421 * 179.72194 * 23 22 21 40 40 H 1.08003 * 120.01090 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9811 -0.8428 5 6 3.5421 1.4442 -0.1215 6 1 4.1494 1.8090 0.6938 7 6 4.1412 0.9801 -1.2733 8 7 3.4096 0.7116 -2.3326 9 14 5.9919 0.7328 -1.3292 10 1 6.3289 -0.6067 -0.7838 11 1 6.4618 0.8275 -2.7347 12 1 6.6562 1.7808 -0.5134 13 7 1.6505 2.0982 1.2509 14 6 0.4330 2.6651 1.3637 15 8 -0.3403 2.6321 0.4300 16 6 0.0325 3.3401 2.6503 17 1 0.7730 4.0968 2.9094 18 8 -1.2445 3.9599 2.4855 19 6 -0.0463 2.2994 3.7691 20 6 -0.3260 2.9902 5.0788 21 6 -1.6311 3.1913 5.4892 22 6 -1.8892 3.8252 6.6900 23 6 -0.8429 4.2634 7.4797 24 6 0.4642 4.0568 7.0731 25 9 1.4878 4.4793 7.8471 26 6 0.7216 3.4220 5.8696 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8310 0.3847 -3.1430 33 1 2.2688 2.1242 1.9978 34 1 -1.9534 3.3444 2.2534 35 1 0.9014 1.7649 3.8354 36 1 -0.8475 1.5929 3.5525 37 1 -2.4493 2.8535 4.8704 38 1 -2.9090 3.9822 7.0093 39 1 -1.0449 4.7627 8.4158 40 1 1.7409 3.2641 5.5492 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184152070.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:10 Heat of formation + Delta-G solvation = -144.624691 kcal Electronic energy + Delta-G solvation = -23623.983084 eV Core-core repulsion = 19930.639369 eV Total energy + Delta-G solvation = -3693.343714 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.85474 -41.17701 -39.95291 -37.81924 -36.61125 -34.48206 -33.78642 -32.81954 -31.42961 -30.11283 -28.66155 -25.90088 -24.76010 -23.60585 -22.46908 -22.05581 -21.13533 -19.43305 -18.35439 -17.73382 -17.65573 -17.18951 -17.03655 -16.85664 -16.53684 -16.36790 -15.82647 -15.64551 -15.02691 -14.87560 -14.59964 -14.27885 -14.05811 -13.72604 -13.47049 -13.34964 -13.19930 -12.94586 -12.86518 -12.75380 -12.61862 -12.45460 -12.17680 -12.04715 -11.95628 -11.76849 -11.57033 -11.08843 -10.54720 -10.40931 -9.82310 -9.64511 -9.55462 -8.19366 -6.32110 0.23294 0.29869 1.44782 1.45423 1.54700 1.77131 2.34258 2.55088 2.72121 3.12649 3.23173 3.40854 3.71961 3.84223 3.94199 4.09369 4.12705 4.25010 4.34897 4.48018 4.48665 4.55775 4.67983 4.74035 4.85322 5.02411 5.07338 5.17195 5.21436 5.26208 5.42158 5.43121 5.53937 5.59581 5.61655 5.76696 5.91992 6.00237 6.08323 6.61969 6.77249 6.99098 7.34033 7.55860 8.89029 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.003668 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.880236 B = 7630.954052 C = 8637.155188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.112 4.112 3 C 0.275 3.725 4 H 0.000 1.000 5 C -0.550 4.550 6 H 0.073 0.927 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.964 3.036 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.264 1.264 13 N -0.699 5.699 14 C 0.471 3.529 15 O -0.580 6.580 16 C 0.113 3.887 17 H 0.127 0.873 18 O -0.545 6.545 19 C -0.101 4.101 20 C -0.051 4.051 21 C -0.117 4.117 22 C -0.090 4.090 23 C -0.161 4.161 24 C 0.074 3.926 25 F -0.152 7.152 26 C -0.161 4.161 27 H 0.052 0.948 28 H 0.022 0.978 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.264 0.736 33 H 0.404 0.596 34 H 0.389 0.611 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.145 0.855 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.627 3.015 19.599 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.171 3.829 4 H 0.018 0.982 5 C -0.588 4.588 6 H 0.091 0.909 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.789 3.211 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.189 1.189 13 N -0.349 5.349 14 C 0.257 3.743 15 O -0.461 6.461 16 C 0.050 3.950 17 H 0.145 0.855 18 O -0.350 6.350 19 C -0.139 4.139 20 C -0.051 4.051 21 C -0.135 4.135 22 C -0.107 4.107 23 C -0.180 4.180 24 C 0.055 3.945 25 F -0.131 7.131 26 C -0.180 4.180 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.239 0.761 34 H 0.239 0.761 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.163 0.837 38 H 0.177 0.823 39 H 0.167 0.833 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.786 3.483 18.920 21.149 hybrid contribution 1.304 -0.519 -0.405 1.460 sum -7.482 2.964 18.514 20.188 Atomic orbital electron populations 1.21688 0.96491 0.99422 1.00579 1.21689 0.94265 0.98787 1.00398 1.18375 0.93575 0.89215 0.81696 0.98166 1.21569 0.91542 1.43608 1.02097 0.90935 1.25742 1.02953 0.94895 0.94653 1.70131 1.37714 1.44806 1.02766 0.85481 0.79534 0.79046 0.77030 1.19532 1.21602 1.18879 1.46286 1.15612 1.55541 1.17477 1.22037 0.82294 0.78848 0.91136 1.90683 1.52760 1.60648 1.42049 1.21767 0.87978 0.95979 0.89271 0.85544 1.86553 1.17433 1.39043 1.92018 1.21230 1.05657 0.96774 0.90205 1.19507 0.93196 0.97572 0.94853 1.21416 0.96409 0.98896 0.96789 1.21332 0.99986 0.95937 0.93480 1.21420 0.90687 1.03213 1.02680 1.17948 0.84941 1.00570 0.91080 1.91470 1.58864 1.88298 1.74477 1.21220 1.01258 1.01388 0.94096 0.92867 0.95847 0.93327 0.93372 0.92979 0.92695 0.76084 0.76114 0.88100 0.88567 0.83711 0.82299 0.83337 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.14 8.51 71.98 0.61 -4.52 16 2 C -0.11 -5.16 5.50 30.59 0.17 -4.99 16 3 C 0.28 13.45 2.11 44.25 0.09 13.54 16 4 H 0.00 0.02 7.52 -2.39 -0.02 0.01 16 5 C -0.55 -28.23 8.66 25.60 0.22 -28.00 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 7 C 0.02 0.96 5.16 84.66 0.44 1.40 16 8 N -0.92 -52.43 12.16 21.45 0.26 -52.17 16 9 Si 0.96 41.48 29.55 68.60 2.03 43.51 16 10 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 13 N -0.70 -26.25 4.92 -446.09 -2.19 -28.44 16 14 C 0.47 16.70 5.73 87.66 0.50 17.21 16 15 O -0.58 -25.69 13.46 15.97 0.21 -25.48 16 16 C 0.11 2.82 3.37 29.85 0.10 2.92 16 17 H 0.13 2.99 8.14 -2.38 -0.02 2.97 16 18 O -0.54 -13.99 12.49 -129.99 -1.62 -15.62 16 19 C -0.10 -1.89 5.00 29.85 0.15 -1.74 16 20 C -0.05 -0.93 4.97 -19.87 -0.10 -1.03 16 21 C -0.12 -1.83 9.40 22.27 0.21 -1.62 16 22 C -0.09 -1.24 10.04 22.26 0.22 -1.01 16 23 C -0.16 -2.61 10.03 22.31 0.22 -2.39 16 24 C 0.07 1.49 7.30 22.38 0.16 1.65 16 25 F -0.15 -3.44 17.27 44.97 0.78 -2.67 16 26 C -0.16 -3.13 9.68 22.31 0.22 -2.91 16 27 H 0.05 2.02 5.65 -2.39 -0.01 2.01 16 28 H 0.02 1.06 7.84 -2.39 -0.02 1.05 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 2.51 6.80 -2.39 -0.02 2.50 16 31 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 33 H 0.40 12.51 8.23 -92.71 -0.76 11.74 16 34 H 0.39 8.23 8.79 -74.05 -0.65 7.58 16 35 H 0.10 1.75 7.71 -2.39 -0.02 1.73 16 36 H 0.10 1.65 8.09 -2.39 -0.02 1.63 16 37 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 39 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -67.91 339.95 2.34 -65.57 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: -0.34 Total: 26.80 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 3.22 Total: -11.50 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -1.93 Total: -80.62 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -1.41 Total: -41.09 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.78 Total: -2.67 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -67.91 2.34 -65.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184152070.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.052 kcal (2) G-P(sol) polarization free energy of solvation -67.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds