Wall clock time and date at job start Tue Mar 31 2020 07:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47389 * 2 1 4 4 O 1.42901 * 109.46918 * 239.99783 * 2 1 3 5 5 C 1.53004 * 109.47059 * 120.00346 * 2 1 3 6 6 H 1.09001 * 109.47150 * 304.99218 * 5 2 1 7 7 F 1.39900 * 109.46623 * 184.99824 * 5 2 1 8 8 C 1.52996 * 109.47155 * 64.99840 * 5 2 1 9 9 N 1.46505 * 109.46922 * 179.97438 * 8 5 2 10 10 C 1.34775 * 119.99785 * 180.02562 * 9 8 5 11 11 O 1.21545 * 120.00203 * 359.97438 * 10 9 8 12 12 C 1.47884 * 119.99516 * 180.02562 * 10 9 8 13 13 C 1.39919 * 120.03123 * 359.72296 * 12 10 9 14 14 C 1.38326 * 120.36139 * 179.78501 * 13 12 10 15 15 C 1.37749 * 120.41123 * 0.47266 * 14 13 12 16 16 C 1.40752 * 120.04114 * 359.78268 * 15 14 13 17 17 C 1.41436 * 120.17804 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99900 * 334.92974 * 17 16 15 19 19 C 1.39938 * 120.00045 * 154.93115 * 17 16 15 20 20 N 1.30831 * 119.99756 * 342.58232 * 19 17 16 21 21 Si 1.86800 * 119.99906 * 162.57497 * 19 17 16 22 22 H 1.48496 * 109.47212 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46696 * 120.00472 * 21 19 17 24 24 H 1.48501 * 109.46957 * 240.00077 * 21 19 17 25 25 C 1.38998 * 120.02108 * 179.97438 * 12 10 9 26 26 H 1.09001 * 109.46989 * 299.99888 * 1 2 3 27 27 H 1.08996 * 109.47418 * 59.99733 * 1 2 3 28 28 H 1.09001 * 109.47421 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47399 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46999 * 300.00018 * 3 2 1 31 31 H 1.09001 * 109.46963 * 60.00096 * 3 2 1 32 32 H 0.96703 * 113.99968 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.47342 * 60.00135 * 8 5 2 34 34 H 1.08999 * 109.46966 * 299.99595 * 8 5 2 35 35 H 0.97001 * 120.00005 * 359.97438 * 9 8 5 36 36 H 1.08004 * 119.81770 * 359.97438 * 13 12 10 37 37 H 1.08003 * 119.79233 * 180.22755 * 14 13 12 38 38 H 1.08000 * 119.98306 * 179.76482 * 15 14 13 39 39 H 0.96996 * 119.99696 * 180.02562 * 20 19 17 40 40 H 1.07993 * 120.20751 * 359.95943 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 2.0399 -0.7213 1.2492 6 1 1.6054 -0.2618 2.1370 7 9 3.4342 -0.6226 1.3081 8 6 1.6351 -2.1955 1.1879 9 7 2.1240 -2.8863 2.3838 10 6 1.8841 -4.2024 2.5471 11 8 1.2617 -4.8162 1.7025 12 6 2.3771 -4.8995 3.7546 13 6 3.0977 -4.1946 4.7250 14 6 3.5582 -4.8389 5.8591 15 6 3.3214 -6.1835 6.0419 16 6 2.6030 -6.9104 5.0742 17 6 2.3577 -8.2910 5.2592 18 1 3.0175 -8.8781 5.8807 19 6 1.2601 -8.8962 4.6369 20 7 0.2819 -8.1601 4.1755 21 14 1.1920 -10.7550 4.4646 22 1 2.4121 -11.3528 5.0640 23 1 -0.0092 -11.2734 5.1674 24 1 1.1184 -11.1165 3.0262 25 6 2.1295 -6.2568 3.9238 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.9702 -0.7115 -1.2331 33 1 2.0698 -2.6550 0.3002 34 1 0.5488 -2.2724 1.1421 35 1 2.6210 -2.3966 3.0577 36 1 3.2928 -3.1411 4.5892 37 1 4.1103 -4.2850 6.6040 38 1 3.6875 -6.6804 6.9282 39 1 -0.4791 -8.5797 3.7445 40 1 1.5768 -6.8057 3.1759 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188689414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:03 Heat of formation + Delta-G solvation = -132.508515 kcal Electronic energy + Delta-G solvation = -23442.481641 eV Core-core repulsion = 19749.663324 eV Total energy + Delta-G solvation = -3692.818318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.98631 -39.25088 -38.38361 -37.00860 -34.56100 -33.72282 -32.82977 -30.51366 -29.46037 -28.76030 -27.51988 -25.33678 -23.90830 -21.95427 -20.94541 -20.77277 -19.57410 -17.93404 -17.29011 -16.84279 -16.56876 -15.80890 -15.26811 -15.13138 -14.78100 -14.71741 -14.35729 -14.17217 -13.54447 -13.32779 -13.17720 -12.94214 -12.77698 -12.61813 -12.53901 -12.48384 -12.40275 -11.79293 -11.62568 -11.36507 -11.16592 -11.08287 -10.94673 -10.73078 -10.49292 -10.21928 -10.03082 -9.69174 -9.22638 -9.04773 -8.73052 -7.63950 -7.52431 -6.80294 -4.41805 2.19491 2.80362 3.08249 3.13136 3.14766 3.42245 3.84657 3.85117 3.92334 4.08720 4.29596 4.39838 4.61215 4.63559 4.72547 5.01084 5.23834 5.37337 5.46042 5.51424 5.57438 5.60674 5.73693 5.74093 5.92215 6.00223 6.08403 6.26623 6.70853 6.75995 6.97991 7.00551 7.20611 7.30760 7.37451 7.68820 7.74079 7.91280 8.05712 8.17837 8.50060 8.79885 8.82735 8.91449 10.14608 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.025400 B = 0.003344 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.111413 B = 8372.075709 C = 9154.171805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.110 3.890 3 C -0.180 4.180 4 O -0.550 6.550 5 C 0.054 3.946 6 H 0.096 0.904 7 F -0.206 7.206 8 C 0.100 3.900 9 N -0.738 5.738 10 C 0.565 3.435 11 O -0.544 6.544 12 C -0.128 4.128 13 C -0.218 4.218 14 C -0.097 4.097 15 C -0.211 4.211 16 C 0.099 3.901 17 C -0.460 4.460 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.784 5.784 21 Si 0.910 3.090 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.270 1.270 25 C -0.091 4.091 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.381 0.619 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.400 0.600 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.284 0.716 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 15.675 -5.676 16.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.068 3.932 3 C -0.237 4.237 4 O -0.356 6.356 5 C 0.017 3.983 6 H 0.114 0.886 7 F -0.186 7.186 8 C -0.024 4.024 9 N -0.392 5.392 10 C 0.356 3.644 11 O -0.421 6.421 12 C -0.132 4.132 13 C -0.238 4.238 14 C -0.116 4.116 15 C -0.231 4.231 16 C 0.096 3.904 17 C -0.488 4.488 18 H 0.100 0.900 19 C -0.146 4.146 20 N -0.408 5.408 21 Si 0.734 3.266 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.195 1.195 25 C -0.111 4.111 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.229 0.771 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.236 0.764 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.008 15.149 -6.520 16.492 hybrid contribution 0.812 -0.337 0.460 0.992 sum 0.819 14.811 -6.060 16.024 Atomic orbital electron populations 1.21830 0.91230 1.04013 1.03171 1.21701 0.96109 0.91218 0.84171 1.22467 1.02334 0.95616 1.03289 1.86585 1.27332 1.79069 1.42645 1.22657 0.76872 0.97799 1.01013 0.88569 1.92825 1.30871 1.97280 1.97657 1.21752 1.00891 0.89566 0.90211 1.45875 1.59630 1.10428 1.23309 1.18847 0.78327 0.80581 0.86638 1.90704 1.40765 1.66090 1.44590 1.19449 1.03937 0.95445 0.94319 1.20340 1.08248 0.97473 0.97708 1.20433 0.99838 0.94863 0.96445 1.21108 1.08765 0.93628 0.99611 1.17610 0.89798 0.93307 0.89691 1.19617 1.09167 0.93692 1.26371 0.90022 1.25971 0.94502 1.01068 0.93082 1.69797 1.05578 1.38128 1.27303 0.86230 0.79219 0.82075 0.79058 1.18343 1.19925 1.19539 1.21636 0.99930 0.91667 0.97861 0.90633 0.90957 0.90782 0.91516 0.91079 0.91241 0.77072 0.90016 0.89872 0.76433 0.89284 0.88874 0.88579 0.90492 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.60 37.15 0.32 -0.88 16 2 C 0.11 0.99 0.93 -90.62 -0.08 0.90 16 3 C -0.18 -1.29 8.65 37.16 0.32 -0.96 16 4 O -0.55 -5.70 12.10 -35.23 -0.43 -6.13 16 5 C 0.05 0.55 2.75 -26.73 -0.07 0.48 16 6 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 7 F -0.21 -2.40 16.01 2.25 0.04 -2.37 16 8 C 0.10 1.41 4.99 -4.04 -0.02 1.39 16 9 N -0.74 -12.46 5.44 -61.24 -0.33 -12.79 16 10 C 0.57 12.56 7.77 -12.31 -0.10 12.47 16 11 O -0.54 -13.83 16.33 5.33 0.09 -13.74 16 12 C -0.13 -3.06 5.87 -105.04 -0.62 -3.68 16 13 C -0.22 -4.62 9.55 -38.92 -0.37 -4.99 16 14 C -0.10 -2.09 10.01 -39.73 -0.40 -2.49 16 15 C -0.21 -5.03 9.78 -38.81 -0.38 -5.41 16 16 C 0.10 2.62 5.57 -106.87 -0.59 2.02 16 17 C -0.46 -12.11 9.05 -37.73 -0.34 -12.45 16 18 H 0.08 2.04 7.90 -52.49 -0.41 1.63 16 19 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 20 N -0.78 -20.82 10.97 55.55 0.61 -20.21 16 21 Si 0.91 18.83 29.59 -169.99 -5.03 13.80 16 22 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 C -0.09 -2.44 8.23 -38.44 -0.32 -2.76 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.71 6.57 -51.93 -0.34 0.37 16 29 H 0.07 0.49 7.69 -51.93 -0.40 0.09 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.38 3.05 8.84 45.56 0.40 3.45 16 33 H 0.08 1.27 7.56 -51.93 -0.39 0.88 16 34 H 0.08 1.18 6.57 -51.93 -0.34 0.84 16 35 H 0.40 5.98 6.43 -40.82 -0.26 5.71 16 36 H 0.09 1.57 6.38 -52.48 -0.33 1.24 16 37 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 38 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 40 H 0.13 3.88 5.76 -52.49 -0.30 3.58 16 LS Contribution 337.45 15.07 5.09 5.09 Total: -1.00 -30.96 337.45 -7.19 -38.15 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -4.48 Total: 12.79 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -2.74 Total: -14.60 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.28 Total: -33.00 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.34 Total: -19.87 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.96 -7.19 -38.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188689414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.358 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds